UBERON:0005721: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005721
|name=pronephric mesoderm
|namespace=
|def=
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067
|is_a=UBERON:...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:23, 15 June 2012
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101958887..101958896,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958887..101958896, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:164787162..164787188,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:164787162..164787188, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:34813361..34813403,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:34813361..34813403, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:148445639..148445665,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:148445639..148445665, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:73221034..73221051,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:73221034..73221051, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:62775330..62775347,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr18:62775330..62775347, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:70761931..70761971,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:70761931..70761971, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19062951..19062955,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19062951..19062955, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:156048695..156048707,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:156048695..156048707, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25349402..25349409,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:148625223..148625234,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:148625223..148625234, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:50280126..50280140,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280126..50280140, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr6:18338054..18338077,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr6:18338054..18338077, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379486..31379501,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379486..31379501, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:160573108..160573123,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:160573108..160573123, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379372..21379404,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379372..21379404, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:19141429..19141440,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19141429..19141440, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:105313229..105313234,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p17@Capn5 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379845..31379855, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:24270118..24270122,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:24270118..24270122, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:116399500..116399516,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:116399500..116399516, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:50280199..50280211,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280199..50280211, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:91107095..91107103,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:91107095..91107103, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:88272459..88272484,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:88272459..88272484, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164480465..164480471,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Wfdc9 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:66589365..66589371,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p19@Clu |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:110773580..110773589,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:110773580..110773589, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164480465..164480471,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Wfdc9 |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:130496166..130496188,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496166..130496188, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:20817297..20817313,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:20817297..20817313, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:155738967..155738974,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:155738967..155738974, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:107073888..107073914,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:107073888..107073914, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:134893699..134893708,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:134893699..134893708, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379159..21379162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379159..21379162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35651650..35651673,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@9230110F15Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:40010825..40010844,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:40010825..40010844, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:148445639..148445665,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:148445639..148445665, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21380670..21380678,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21380670..21380678, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr19:17591760..17591765,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr19:17591760..17591765, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:56772735..56772741,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:56772735..56772741, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:106731469..106731481,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:106731469..106731481, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90156002..90156013,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90156002..90156013, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:155698178..155698191,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:155698178..155698191, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:25752228..25752237,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:25752228..25752237, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26727675..26727681,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26727675..26727681, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:113585667..113585673,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:113585667..113585673, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:91753336..91753348,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:91753336..91753348, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:25563187..25563205,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:25563187..25563205, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:88272459..88272484,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:88272459..88272484, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:167688595..167688624,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:167688595..167688624, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:96140694..96140720,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:96140694..96140720, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:124447371..124447383,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:124447371..124447383, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:59845376..59845393,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:59845376..59845393, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21385325..21385329,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21385325..21385329, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496166..130496188,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496166..130496188, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:73221062..73221084,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:73221062..73221084, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51677141..51677148,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p7@Rnase12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378296..21378303,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378296..21378303, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:152290340..152290344,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Defb23 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152388977..152388983,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:152388977..152388983, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:75329148..75329155,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:75329148..75329155, + |
