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UBERON:0005721

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Name:pronephric mesoderm
Xrefs:
links:

AAO:0011090
EFO:0003479
TAO:0000067
VHOG:0001239
XAO:0000264

ZFA:0000067
Synonyms: "pronephric anlage" RELATED [XAO:0000264]
"pronephric bulge" RELATED [XAO:0000264]
"pronephric mesenchyme" RELATED [XAO:0000264]
"pronephric primordium" RELATED [XAO:0000264]
Comments:the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0007297(presumptive pronephric mesoderm)
part_of:UBERON:0003064(intermediate mesoderm)



Children

develops from:UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.83e-65FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddcp@chr10:127470655..127470664, +
2.83e-65FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Spink12
2.83e-65FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
2.83e-65FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddcp4@Defb42
2.83e-65FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddcp@chr14:63585028..63585037, -
3.99e-50FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
3.99e-50FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375cp@chr2:152388713..152388729, +
5.6e-50FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
5.6e-50FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524aep@chr2:120409486..120409492, +
1.6e-49FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585020..63585025, -
1.6e-49FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95p4@Cyb561
1.6e-49FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95p2@D730048I06Rik, p2@Gm17727
1.6e-49FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
1.6e-49FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr14:63585048..63585062, -
1.6e-49FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95p@chr11:76361451..76361499, +
2.33e-49FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
2.33e-49FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6p2@Eddm3b
2.33e-49FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26611246..26611253, -
2.33e-49FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr14:63627556..63627564, -
2.33e-49FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6p@chr9:26732045..26732085, +
3.4e-49FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
3.4e-49FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844p@chr2:69981027..69981032, +
9.75e-45FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
9.75e-45FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168dbp@chr1:172416185..172416189, -
9.75e-45FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168dbp10@PAX2
9.75e-45FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168dbp@chr14:68644730..68644737, +
4.54e-44FFCP PHASE1:Mm9::chr9:35585507..35585517,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@Gm17727
4.54e-44FFCP PHASE2:Mm9::chr11:101958887..101958896,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101958887..101958896, -
4.54e-44FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:39707572..39707583, +
4.54e-44FFCP PHASE1:Mm9::chr15:54678902..54678911,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:54678902..54678911, -
4.54e-44FFCP PHASE1:Mm9::chr12:103896102..103896116,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr12:103896102..103896116, -
4.54e-44FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:31379845..31379855, +
4.54e-44FFCP PHASE2:Mm9::chr2:167480413..167480463,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr2:167480413..167480463, -
4.54e-44FFCP PHASE2:Mm9::chr7:109379339..109379349,+#_a36a387a3a10bbdf54775f8b8ef579b0p15@Pgap2
4.54e-44FFCP PHASE1:Mm9::chr13:21380610..21380620,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21380610..21380620, -
4.54e-44FFCP PHASE2:Mm9::chr16:25752183..25752203,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr16:25752183..25752203, +
4.54e-44FFCP PHASE2:Mm9::chr5:31379972..31379981,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:31379972..31379981, +
4.54e-44FFCP PHASE2:Mm9::chr1:87922962..87922982,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:87922962..87922982, +
4.54e-44FFCP PHASE2:Mm9::chr14:69116075..69116107,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:69116075..69116107, -
4.54e-44FFCP PHASE2:Mm9::chr2:148676919..148676930,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@9230104L09Rik
4.54e-44FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:101959159..101959163, +
4.54e-44FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@ENSMUST00000139012, p1@uc008uqo.1
4.54e-44FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_a36a387a3a10bbdf54775f8b8ef579b0p4@Rnase10
4.54e-44FFCP PHASE1:Mm9::chr13:21378296..21378303,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21378296..21378303, +
4.54e-44FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_a36a387a3a10bbdf54775f8b8ef579b0p5@Spink12
4.54e-44FFCP PHASE1:Mm9::chr11:116901496..116901514,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1
4.54e-44FFCP PHASE2:Mm9::chr9:35651788..35651804,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@9230110F15Rik
4.54e-44FFCP PHASE2:Mm9::chr9:26730625..26730636,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Gm1110
4.54e-44FFCP PHASE1:Mm9::chr10:61976287..61976297,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr10:61976287..61976297, -
4.54e-44FFCP PHASE2:Mm9::chr8:22061771..22061777,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Gm6040, p3@LOC100503992
4.54e-44FFCP PHASE2:Mm9::chr1:90368977..90368987,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90368977..90368987, +
4.54e-44FFCP PHASE2:Mm9::chr14:63611214..63611229,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr14:63611214..63611229, +
4.54e-44FFCP PHASE1:Mm9::chr3:146278590..146278595,-#_a36a387a3a10bbdf54775f8b8ef579b0p10@Dnase2b
4.54e-44FFCP PHASE2:Mm9::chr5:31379377..31379384,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:31379377..31379384, +
4.54e-44FFCP PHASE1:Mm9::chr13:21381777..21381789,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21381777..21381789, -
4.54e-44FFCP PHASE2:Mm9::chrX:12571679..12571688,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:12571679..12571688, -
4.54e-44FFCP PHASE1:Mm9::chrX:20219008..20219045,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:20219008..20219045, +
4.54e-44FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_a36a387a3a10bbdf54775f8b8ef579b0p2@Gm6792
4.54e-44FFCP PHASE1:Mm9::chr1:90368977..90368987,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:90368977..90368987, +
4.54e-44FFCP PHASE2:Mm9::chr11:59845349..59845371,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:59845349..59845371, -
4.54e-44FFCP PHASE1:Mm9::chr9:70779586..70779596,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:70779586..70779596, +
4.54e-44FFCP PHASE2:Mm9::chr17:73221034..73221051,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr17:73221034..73221051, +
4.54e-44FFCP PHASE1:Mm9::chr9:26730625..26730636,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Gm1110
4.54e-44FFCP PHASE1:Mm9::chr5:110773731..110773753,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:110773731..110773753, +
4.54e-44FFCP PHASE2:Mm9::chr2:152302768..152302774,+#_a36a387a3a10bbdf54775f8b8ef579b0p4@Defb20
4.54e-44FFCP PHASE2:Mm9::chr9:56469136..56469145,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr9:56469136..56469145, -
4.54e-44FFCP PHASE2:Mm9::chr11:96140694..96140720,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:96140694..96140720, +
4.54e-44FFCP PHASE1:Mm9::chr13:21378968..21378988,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21378968..21378988, -
4.54e-44FFCP PHASE2:Mm9::chr8:19142604..19142612,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr8:19142604..19142612, +
4.54e-44FFCP PHASE2:Mm9::chr5:75559819..75559830,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr5:75559819..75559830, +
4.54e-44FFCP PHASE1:Mm9::chr2:152302739..152302742,+#_a36a387a3a10bbdf54775f8b8ef579b0p5@Defb20
4.54e-44FFCP PHASE1:Mm9::chr15:75347689..75347703,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:75347689..75347703, +
4.54e-44FFCP PHASE2:Mm9::chr1:43367743..43367754,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:43367743..43367754, -
4.54e-44FFCP PHASE2:Mm9::chr8:25706083..25706089,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@Ido1
4.54e-44FFCP PHASE2:Mm9::chr7:6204391..6204398,+#_a36a387a3a10bbdf54775f8b8ef579b0p2@Gm6792
4.54e-44FFCP PHASE1:Mm9::chr18:74784728..74784738,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr18:74784728..74784738, +
4.54e-44FFCP PHASE1:Mm9::chr17:35252614..35252635,-#_a36a387a3a10bbdf54775f8b8ef579b0p3@Ly6g5b
4.54e-44FFCP PHASE2:Mm9::chr15:75304916..75304925,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:75304916..75304925, +
4.54e-44FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:130496260..130496269, -
4.54e-44FFCP PHASE2:Mm9::chr1:89597725..89597743,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr1:89597725..89597743, +
4.54e-44FFCP PHASE2:Mm9::chr13:21378774..21378782,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr13:21378774..21378782, -
4.54e-44FFCP PHASE1:Mm9::chr9:35651679..35651691,-#_a36a387a3a10bbdf54775f8b8ef579b0p5@9230110F15Rik
4.54e-44FFCP PHASE1:Mm9::chr3:103650817..103650825,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chr3:103650817..103650825, +
4.54e-44FFCP PHASE2:Mm9::chrX:10488683..10488691,+#_a36a387a3a10bbdf54775f8b8ef579b0p@chrX:10488683..10488691, +
4.54e-44FFCP PHASE2:Mm9::chr11:116901496..116901514,-#_a36a387a3a10bbdf54775f8b8ef579b0p1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1
4.54e-44FFCP PHASE2:Mm9::chr15:72756032..72756041,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr15:72756032..72756041, -
4.54e-44FFCP PHASE2:Mm9::chr11:105798218..105798228,-#_a36a387a3a10bbdf54775f8b8ef579b0p@chr11:105798218..105798228, -
4.54e-44FFCP PHASE1:Mm9::chr9:26610184..26610191,-#_a36a387a3a10bbdf54775f8b8ef579b0p4@Glb1l2

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