FANTOM6 Data
- FANTOM6 Data Files
Data files produced in the FANTOM6 project - FANTOM6 Experiment Index
An interface to select experiments and produced data in the FANTOM6 project.
FANTOM6 Supplemental Data
- Ramilowski et al. 2020
Initial Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping - Yip et al. 2022
Supplemental Materials for Yip et al. 2022
FANTOM5 Data
- FANTOM5 Data Summary
Selected data files for FANTOM5 and instructions for bulk download. - TET
A system for extracting subsets of data from selected FANTOM5 data files including phase 1 and 2 expression tables.
- FANTOM CAT
An atlas of human long non-coding RNAs with accurate 5’ ends
FANTOM5 Supplemental Data
- Kanamori-Katayama et al. 2011
An automated workflow to sequence CAGE libraries. - Motakis et al. 2013
Redefinition of the human mast cell transcriptome by deep sequencing - Kawaji et al. 2013
Comparison of CAGE and RNA-seq transcriptome profiling using a clonally amplified and single molecule next generation sequencing - Verardo et al. 2014
Heterogeneity of mesenchymal stem cells and signatures in ovarian cancer - Ohmiya et al. 2014
RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation - Lizio et al. 2015
Cell type-specific regulatory networks in TC-YIK cervical cancer cell line - Arner et al. 2015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells - Ramilowski el al. 2015
A draft network of ligand-receptor mediated multicellular signaling in human - Dieterich et al. 2015
Role of human MAFB in lymphatic endothelium - De_Rie_et_al_2017
An atlas of miRNAs - Klein et al. 2015
Lymphatic endothelial response to VEGF-C is regulated by HOXD10 transcription factor - Hon_et_al_2016/
An atlas of lncRNAs with accurate 5' ends - Abugessaisa et al. 2016
The FANTOM5 SSTAR sample database - Lizio et al 2017
Systematic analysis of TSSs in avian development - Hirabayashi et al. 2019
Enhancers identified by a new technology to capture nascent and capped transcripts (NET-CAGE) - Alam et al. 2020
Whole-genome multiple sequence alignments, genome-wide transcription factor binding site predictions, and motif activity scripts for comparative transcriptomics