UBERON:0002371: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001474;;UBERON:0002390;;UBERON:0002405 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:32, 27 June 2012
| Name: | bone marrow | ||
|---|---|---|---|
| Definition: | "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow] | ||
| Xrefs: |
| ||
| Synonyms: |
"anterior kidney" RELATED [] "head kidney" BROAD [] "kidney marrow" RELATED [] "medulla of bone" RELATED [BTO:0000141] "medulla ossea" EXACT [] "medulla ossium" RELATED LATIN [Wikipedia:Bone_marrow] "medulla ossium" RELATED [BTO:0000141] | ||
| Comments: | TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system. also consider adding as subclass of zone of bone organ for consistency with FMA. See also: Leydig and epigonal organs | ||
| Alt_id: | UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001474(bone element),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system) |
Children
| derives from: | FF:0010192 (human bone marrow - adult sample),FF:0200020 (osteoclast, bone marrow-derived sample),FF:0200029 (hematopoietic stem cell, bone marrow derived sample) |
|---|---|
| part of: | CL:0000556 (megakaryocyte),CL:0000557 (granulocyte monocyte progenitor cell),CL:0002092 (bone marrow cell),CL:0002476 (bone marrow macrophage),CL:0002540 (mesenchymal stem cell of the bone marrow),UBERON:0007195 (stroma of bone marrow),CL:1001610 (bone marrow hematopoietic cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10686-109F2 (bone marrow stromal cell line:StromaNKtert)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10761-110E5
- 10773-110F8
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10686-109F2 (bone marrow stromal cell line:StromaNKtert)
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10761-110E5
- 10773-110F8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002371 (bone marrow), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.02e-119 | FFCP PHASE1:Hg19::chr1:161187824..161187847,+#_fb288fb0dd4490ba420de939d7b549c6 | p@chr1:161187824..161187847, + |
| 3.02e-119 | FFCP PHASE2:Hg19::chr1:161187824..161187847,+#_fb288fb0dd4490ba420de939d7b549c6 | p@chr1:161187824..161187847, + |
| 7.29e-115 | FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_0f7bf86989a2da0c0782b39d099bd003 | p@chr16:50313426..50313459, + |
| 7.29e-115 | FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_0f7bf86989a2da0c0782b39d099bd003 | p@chr16:50313426..50313459, + |
| 1.19e-114 | FFCP PHASE2:Hg19::chr1:161188661..161188679,+#_f05fbde14200f076ddb4fbaa2a643511 | p@chr1:161188661..161188679, + |
| 1.19e-114 | FFCP PHASE1:Hg19::chr1:161188661..161188679,+#_f05fbde14200f076ddb4fbaa2a643511 | p@chr1:161188661..161188679, + |
| 4.24e-113 | FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_b3c9078f5b6cbfc07d37145982131b60 | p7@EMILIN2 |
| 4.24e-113 | FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_b3c9078f5b6cbfc07d37145982131b60 | p7@EMILIN2 |
| 1.01e-112 | FFCP PHASE1:Hg19::chr7:77050554..77050601,+#_2e0774b534916bd0083c05f67a9b4bdc | p@chr7:77050554..77050601, + |
| 1.01e-112 | FFCP PHASE2:Hg19::chr7:77050554..77050601,+#_2e0774b534916bd0083c05f67a9b4bdc | p@chr7:77050554..77050601, + |
| 1.9e-111 | FFCP PHASE1:Hg19::chr1:161188746..161188758,+#_c358df2711241791bf4fc993444f90c0 | p@chr1:161188746..161188758, + |
| 1.9e-111 | FFCP PHASE2:Hg19::chr1:161188746..161188758,+#_c358df2711241791bf4fc993444f90c0 | p@chr1:161188746..161188758, + |
| 7.78e-111 | FFCP PHASE2:Hg19::chr17:7482481..7482508,-#_fea5d07b0a7ac31f193be8b2dd36553d | p@chr17:7482481..7482508, - |
| 7.78e-111 | FFCP PHASE1:Hg19::chr17:7482481..7482508,-#_fea5d07b0a7ac31f193be8b2dd36553d | p@chr17:7482481..7482508, - |
| 2.59e-110 | FFCP PHASE1:Hg19::chr19:18288651..18288682,+#_8420d68ef0d380fba0fee47cc4bf47c6 | p5@IFI30 |
| 2.59e-110 | FFCP PHASE2:Hg19::chr19:18288651..18288682,+#_8420d68ef0d380fba0fee47cc4bf47c6 | p5@IFI30 |
| 5.16e-109 | FFCP PHASE2:Hg19::chr4:3387239..3387324,-#_72086cba4aa5b69ab20eee096ff962c4 | p@chr4:3387239..3387324, - |
| 5.16e-109 | FFCP PHASE1:Hg19::chr4:3387239..3387324,-#_72086cba4aa5b69ab20eee096ff962c4 | p@chr4:3387239..3387324, - |
| 1.18e-107 | FFCP PHASE1:Hg19::chr7:2832730..2832791,+#_536c1801722acc7850108a0aefb2bac6 | p@chr7:2832730..2832791, + |
| 1.18e-107 | FFCP PHASE2:Hg19::chr7:2832730..2832791,+#_536c1801722acc7850108a0aefb2bac6 | p@chr7:2832730..2832791, + |
| 7.69e-107 | FFCP PHASE2:Hg19::chr5:180242646..180242657,-#_00a7aef9980fdd13dbb72f4993ca7431 | p15@MGAT1 |
| 7.69e-107 | FFCP PHASE1:Hg19::chr5:180242646..180242657,-#_00a7aef9980fdd13dbb72f4993ca7431 | p15@MGAT1 |
| 2.19e-106 | FFCP PHASE1:Hg19::chr19:18288828..18288861,+#_86423e31ee228d41f7578b87f9cbd65f | p7@IFI30 |
| 2.19e-106 | FFCP PHASE2:Hg19::chr19:18288828..18288861,+#_86423e31ee228d41f7578b87f9cbd65f | p7@IFI30 |
| 4.2e-106 | FFCP PHASE2:Hg19::chr1:111743000..111743011,+#_edaee5933a9448bc812c28369aaa999d | p8@CHI3L2 |
| 4.2e-106 | FFCP PHASE1:Hg19::chr1:111743000..111743011,+#_edaee5933a9448bc812c28369aaa999d | p8@CHI3L2 |
| 9.25e-106 | FFCP PHASE2:Hg19::chr17:40168698..40168726,-#_9d42f22ed206a684bd783c92e03ceafc | p1@AK126179 |
| 9.25e-106 | FFCP PHASE1:Hg19::chr17:40168698..40168726,-#_9d42f22ed206a684bd783c92e03ceafc | p1@AK126179 |
| 6.0e-105 | FFCP PHASE2:Hg19::chr2:145429606..145429658,+#_fe5c7ce6cec85a35db1f1742408f3fbe | p@chr2:145429606..145429658, + |
| 6.0e-105 | FFCP PHASE1:Hg19::chr2:145429606..145429658,+#_fe5c7ce6cec85a35db1f1742408f3fbe | p@chr2:145429606..145429658, + |
| 1.54e-104 | FFCP PHASE1:Hg19::chr19:18286116..18286156,+#_37ab9a6aa1d27a2728af9a15e0a16317 | p@chr19:18286116..18286156, + |
| 1.54e-104 | FFCP PHASE2:Hg19::chr19:18286116..18286156,+#_37ab9a6aa1d27a2728af9a15e0a16317 | p@chr19:18286116..18286156, + |
| 3.16e-104 | FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_3a3a7b8f3ab968ecc956e6614f9a10c6 | p2@CD300C |
| 3.16e-104 | FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_3a3a7b8f3ab968ecc956e6614f9a10c6 | p2@CD300C |
| 2.33e-103 | FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_525ade17346c48bec4dee470edcf267c | p1@CYP1B1-AS1 |
| 2.33e-103 | FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_525ade17346c48bec4dee470edcf267c | p1@CYP1B1-AS1 |
| 3.32e-103 | FFCP PHASE1:Hg19::chr15:65174546..65174583,-#_275d4c4bbe0182dfc53910d2a26aa518 | p@chr15:65174546..65174583, - |
| 3.32e-103 | FFCP PHASE2:Hg19::chr15:65174546..65174583,-#_275d4c4bbe0182dfc53910d2a26aa518 | p@chr15:65174546..65174583, - |
| 6.1e-103 | FFCP PHASE1:Hg19::chr4:159727272..159727307,+#_13028d7e697d6a5ca6fa36e0abc17c4c | p7@FNIP2 |
| 6.1e-103 | FFCP PHASE2:Hg19::chr4:159727272..159727307,+#_13028d7e697d6a5ca6fa36e0abc17c4c | p7@FNIP2 |
| 1.77e-102 | FFCP PHASE2:Hg19::chr4:185314125..185314143,-#_356752c12b6ba55692e1e2ac59a532d1 | p@chr4:185314125..185314143, - |
| 1.77e-102 | FFCP PHASE1:Hg19::chr4:185314125..185314143,-#_356752c12b6ba55692e1e2ac59a532d1 | p@chr4:185314125..185314143, - |
| 3.48e-102 | FFCP PHASE2:Hg19::chr3:149531627..149531651,+#_4c67fa311721a70714ee3ed1474222eb | p7@RNF13 |
| 3.48e-102 | FFCP PHASE1:Hg19::chr3:149531627..149531651,+#_4c67fa311721a70714ee3ed1474222eb | p7@RNF13 |
| 9.05e-102 | FFCP PHASE1:Hg19::chr19:52299474..52299504,-#_9a853885e7d51cfad8df78758a993a25 | p@chr19:52299474..52299504, - |
| 9.05e-102 | FFCP PHASE2:Hg19::chr19:52299474..52299504,-#_9a853885e7d51cfad8df78758a993a25 | p@chr19:52299474..52299504, - |
| 1.3e-101 | FFCP PHASE2:Hg19::chr1:161188686..161188721,+#_5356f7331a9a7f1e4acca94148ff9da0 | p@chr1:161188686..161188721, + |
| 1.3e-101 | FFCP PHASE1:Hg19::chr1:161188686..161188721,+#_5356f7331a9a7f1e4acca94148ff9da0 | p@chr1:161188686..161188721, + |
| 2.05e-101 | FFCP PHASE1:Hg19::chr5:131280548..131280574,-#_544475e36132fd7889ad7b5283b019bd | p1@ENST00000425320 |
| 2.05e-101 | FFCP PHASE2:Hg19::chr5:131280548..131280574,-#_544475e36132fd7889ad7b5283b019bd | p1@ENST00000425320 |
| 2.11e-101 | FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_dbc8fd4ac3ddc66319ec55f1b8ec9f13 | p@chr2:119726719..119726744, + |
| 2.11e-101 | FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_dbc8fd4ac3ddc66319ec55f1b8ec9f13 | p@chr2:119726719..119726744, + |
| 6.02e-101 | FFCP PHASE1:Hg19::chr10:73648356..73648408,-#_5ec94b6bb82431e45a3d80174933669e | p@chr10:73648356..73648408, - |
| 6.02e-101 | FFCP PHASE2:Hg19::chr10:73648356..73648408,-#_5ec94b6bb82431e45a3d80174933669e | p@chr10:73648356..73648408, - |
| 7.24e-101 | FFCP PHASE2:Hg19::chr4:185314151..185314178,-#_e3fa43a7157d560a401f9d82edfb1695 | p@chr4:185314151..185314178, - |
| 7.24e-101 | FFCP PHASE1:Hg19::chr4:185314151..185314178,-#_e3fa43a7157d560a401f9d82edfb1695 | p@chr4:185314151..185314178, - |
| 8.21e-101 | FFCP PHASE1:Hg19::chr19:18288064..18288080,+#_cf4fad3c0f83846e35209968edef3b93 | p@chr19:18288064..18288080, + |
| 8.21e-101 | FFCP PHASE2:Hg19::chr19:18288064..18288080,+#_cf4fad3c0f83846e35209968edef3b93 | p@chr19:18288064..18288080, + |
| 3.82e-100 | FFCP PHASE2:Hg19::chrX:153286067..153286101,-#_03a1bfd7d43b897cb5fbbbbd9661ffdc | p@chrX:153286067..153286101, - |
| 3.82e-100 | FFCP PHASE1:Hg19::chrX:153286067..153286101,-#_03a1bfd7d43b897cb5fbbbbd9661ffdc | p@chrX:153286067..153286101, - |
| 4.64e-100 | FFCP PHASE2:Hg19::chr4:185314188..185314207,-#_c6bd6d4e94f4e2f7729de93bcc41c515 | p@chr4:185314188..185314207, - |
| 4.64e-100 | FFCP PHASE1:Hg19::chr4:185314188..185314207,-#_c6bd6d4e94f4e2f7729de93bcc41c515 | p@chr4:185314188..185314207, - |
| 7.34e-100 | FFCP PHASE1:Hg19::chrX:37664331..37664352,+#_57f4cdc1a6cd84f45f77e50503072795 | p@chrX:37664331..37664352, + |
| 7.34e-100 | FFCP PHASE2:Hg19::chrX:37664331..37664352,+#_57f4cdc1a6cd84f45f77e50503072795 | p@chrX:37664331..37664352, + |
| 1.26e-99 | FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_055516f08a1e8e4aa32e040230133b0d | p8@CTSS |
| 1.26e-99 | FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_055516f08a1e8e4aa32e040230133b0d | p8@CTSS |
| 1.49e-99 | FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_a5a92d3282e357a6cf89b988635d70ba | p2@ZEB2-AS1 |
| 1.49e-99 | FFCP PHASE2:Hg19::chr1:161188826..161188842,+#_a5a92d3282e357a6cf89b988635d70ba | p@chr1:161188826..161188842, + |
| 1.49e-99 | FFCP PHASE1:Hg19::chr1:161188826..161188842,+#_a5a92d3282e357a6cf89b988635d70ba | p@chr1:161188826..161188842, + |
| 1.49e-99 | FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_a5a92d3282e357a6cf89b988635d70ba | p2@ZEB2-AS1 |
| 2.41e-99 | FFCP PHASE1:Hg19::chr8:116588888..116588904,+#_2c5ba577e02efe5816e70bac70a99fba | p@chr8:116588888..116588904, + |
| 2.41e-99 | FFCP PHASE2:Hg19::chr8:116588888..116588904,+#_2c5ba577e02efe5816e70bac70a99fba | p@chr8:116588888..116588904, + |
| 3.12e-99 | FFCP PHASE2:Hg19::chr1:145610717..145610730,+#_0ab46bde54cfc4ce5c8bf28d85cd4756 | p4@RNF115 |
| 3.12e-99 | FFCP PHASE1:Hg19::chr1:145610717..145610730,+#_0ab46bde54cfc4ce5c8bf28d85cd4756 | p4@RNF115 |
| 6.31e-99 | FFCP PHASE1:Hg19::chr19:18285955..18285972,+#_140e54e20c44befb3ff954848a52272b | p@chr19:18285955..18285972, + |
| 6.31e-99 | FFCP PHASE2:Hg19::chr19:18285955..18285972,+#_140e54e20c44befb3ff954848a52272b | p@chr19:18285955..18285972, + |
| 6.91e-99 | FFCP PHASE1:Hg19::chr2:129283966..129283970,+#_d97a175e30bb7bf19a262cc3252ee96c | p@chr2:129283966..129283970, + |
| 6.91e-99 | FFCP PHASE2:Hg19::chr2:129283966..129283970,+#_d97a175e30bb7bf19a262cc3252ee96c | p@chr2:129283966..129283970, + |
| 1.67e-98 | FFCP PHASE2:Hg19::chr1:26602990..26603008,+#_5a97f2199be8cbab7d998771cec7d267 | p@chr1:26602990..26603008, + |
| 1.67e-98 | FFCP PHASE1:Hg19::chr1:26602990..26603008,+#_5a97f2199be8cbab7d998771cec7d267 | p@chr1:26602990..26603008, + |
| 1.95e-98 | FFCP PHASE1:Hg19::chr1:108593061..108593077,+#_7efb429297c773ee1bacd6bd91a50fea | p@chr1:108593061..108593077, + |
| 1.95e-98 | FFCP PHASE2:Hg19::chr1:108593061..108593077,+#_7efb429297c773ee1bacd6bd91a50fea | p@chr1:108593061..108593077, + |
| 2.14e-98 | FFCP PHASE1:Hg19::chr19:18288914..18288931,-#_68820a8b835e7042b19099f3ade35078 | p5@CU676849, p5@CU689079 |
| 2.14e-98 | FFCP PHASE2:Hg19::chr19:18288914..18288931,-#_68820a8b835e7042b19099f3ade35078 | p5@CU676849, p5@CU689079 |
| 2.9e-98 | FFCP PHASE2:Hg19::chr20:1517991..1518011,-#_6e836f25f30cbd565f1b8d1c01d2fb1e | p@chr20:1517991..1518011, - |
| 2.9e-98 | FFCP PHASE1:Hg19::chr20:1517991..1518011,-#_6e836f25f30cbd565f1b8d1c01d2fb1e | p@chr20:1517991..1518011, - |
| 5.04e-98 | FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_ee27b2938749d19386fd16683bc24e4b | p@chr19:18283959..18283993, + |
| 5.04e-98 | FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_ee27b2938749d19386fd16683bc24e4b | p@chr19:18283959..18283993, + |
| 1.42e-97 | FFCP PHASE2:Hg19::chr19:18288514..18288554,+#_78e2402cbac4cff40b9afff0ae776073 | p6@IFI30 |
| 1.42e-97 | FFCP PHASE1:Hg19::chr19:18288514..18288554,+#_78e2402cbac4cff40b9afff0ae776073 | p6@IFI30 |
| 1.8e-97 | FFCP PHASE1:Hg19::chr5:180242576..180242585,-#_3a6ebe3e9d7da1bd59c8c0e104545391 | p12@MGAT1 |
| 1.8e-97 | FFCP PHASE2:Hg19::chr5:180242576..180242585,-#_3a6ebe3e9d7da1bd59c8c0e104545391 | p12@MGAT1 |
| 3.13e-97 | FFCP PHASE1:Hg19::chr8:53373491..53373506,-#_21c3a637a76eb46823f602b6f207d3a6 | p4@ST18 |
| 3.13e-97 | FFCP PHASE2:Hg19::chr8:53373491..53373506,-#_21c3a637a76eb46823f602b6f207d3a6 | p4@ST18 |
| 4.98e-97 | FFCP PHASE1:Hg19::chr7:6066589..6066602,-#_07a3dde7adcb3a69e4b98aa8a6cc758c | p4@EIF2AK1 |
| 4.98e-97 | FFCP PHASE2:Hg19::chr7:6066589..6066602,-#_07a3dde7adcb3a69e4b98aa8a6cc758c | p4@EIF2AK1 |
| 6.22e-97 | FFCP PHASE2:Hg19::chr17:7483714..7483726,+#_6449b142b2152f554c25e3f79a6c5491 | p@chr17:7483714..7483726, + |
| 6.22e-97 | FFCP PHASE1:Hg19::chr17:7483714..7483726,+#_6449b142b2152f554c25e3f79a6c5491 | p@chr17:7483714..7483726, + |
| 7.99e-97 | FFCP PHASE1:Hg19::chr7:128503395..128503414,+#_66a8556a0aed7d6b48946b1d4df7ad5f | p@chr7:128503395..128503414, + |
| 7.99e-97 | FFCP PHASE2:Hg19::chr7:128503395..128503414,+#_66a8556a0aed7d6b48946b1d4df7ad5f | p@chr7:128503395..128503414, + |
