Personal tools

UBERON:0002680: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0001895
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:32, 27 June 2012

Name:regional part of metencephalon
Definition:"A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:67942

NIF_GrossAnatomy:birnlex_1361
Synonyms: "anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic]
"anatomical structure of brain of metencephalon" EXACT [OBOL:automatic]
"biological structure of brain of epencephalon-2" EXACT [OBOL:automatic]
"biological structure of brain of metencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic]
"brain anatomical structure of metencephalon" EXACT [OBOL:automatic]
"brain biological structure of epencephalon-2" EXACT [OBOL:automatic]
"brain biological structure of metencephalon" EXACT [OBOL:automatic]
"epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic]
"epencephalon-2 biological structure of brain" EXACT [OBOL:automatic]
"epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic]
"epencephalon-2 brain biological structure" EXACT [OBOL:automatic]
"epencephalon-2 neuraxis segment" EXACT [OBOL:automatic]
"epencephalon-2 regional part of brain" EXACT [OBOL:automatic]
"epencephalon-2 segment of brain" EXACT [OBOL:automatic]
"metencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"metencephalon biological structure of brain" EXACT [OBOL:automatic]
"metencephalon brain anatomical structure" EXACT [OBOL:automatic]
"metencephalon brain biological structure" EXACT [OBOL:automatic]
"metencephalon neuraxis segment" EXACT [OBOL:automatic]
"metencephalon regional part of brain" EXACT [OBOL:automatic]
"metencephalon segment of brain" EXACT [OBOL:automatic]
"metencephalon subdivision" EXACT [FMA:67942]
"neuraxis segment of epencephalon-2" EXACT [OBOL:automatic]
"neuraxis segment of metencephalon" EXACT [OBOL:automatic]
"regional part of brain of epencephalon-2" EXACT [OBOL:automatic]
"regional part of brain of metencephalon" EXACT [OBOL:automatic]
"segment of brain of epencephalon-2" EXACT [OBOL:automatic]
"segment of brain of metencephalon" EXACT [OBOL:automatic]
"segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0002616(regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001895(metencephalon)



Children

is a:UBERON:0000988 (pons),UBERON:0002037 (cerebellum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002680 (regional part of metencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.91e-91FFCP PHASE2:Hg19::chr11:27742115..27742119,-#_5827581d21ab4b6e291ecfac0ee2e13fp17@BDNF
4.91e-91FFCP PHASE1:Hg19::chr11:27742115..27742119,-#_5827581d21ab4b6e291ecfac0ee2e13fp17@BDNF
1.37e-87FFCP PHASE1:Hg19::chr6:72922728..72922737,+#_691075566591f542a78745d8c40bbd6ap29@RIMS1
1.37e-87FFCP PHASE2:Hg19::chr17:72667462..72667471,+#_691075566591f542a78745d8c40bbd6ap11@RAB37
1.37e-87FFCP PHASE1:Hg19::chr9:135538143..135538152,-#_691075566591f542a78745d8c40bbd6ap2@CU680380
1.37e-87FFCP PHASE2:Hg19::chr6:72922728..72922737,+#_691075566591f542a78745d8c40bbd6ap29@RIMS1
1.37e-87FFCP PHASE1:Hg19::chr17:72667462..72667471,+#_691075566591f542a78745d8c40bbd6ap11@RAB37
1.37e-87FFCP PHASE2:Hg19::chr11:123448159..123448170,+#_691075566591f542a78745d8c40bbd6ap4@AB384137
1.37e-87FFCP PHASE1:Hg19::chr15:79724672..79724683,+#_691075566591f542a78745d8c40bbd6ap1@KIAA1024
1.37e-87FFCP PHASE1:Hg19::chr11:123448159..123448170,+#_691075566591f542a78745d8c40bbd6ap4@AB384137
1.37e-87FFCP PHASE2:Hg19::chr9:135538143..135538152,-#_691075566591f542a78745d8c40bbd6ap2@CU680380
1.37e-87FFCP PHASE1:Hg19::chr17:72857611..72857619,-#_691075566591f542a78745d8c40bbd6ap@chr17:72857611..72857619, -
1.37e-87FFCP PHASE2:Hg19::chr17:50236110..50236119,-#_691075566591f542a78745d8c40bbd6ap22@CA10
1.37e-87FFCP PHASE2:Hg19::chr15:79724672..79724683,+#_691075566591f542a78745d8c40bbd6ap1@KIAA1024
1.37e-87FFCP PHASE2:Hg19::chr17:72857611..72857619,-#_691075566591f542a78745d8c40bbd6ap@chr17:72857611..72857619, -
1.37e-87FFCP PHASE1:Hg19::chr17:50236110..50236119,-#_691075566591f542a78745d8c40bbd6ap22@CA10
3.19e-78FFCP PHASE2:Hg19::chr11:122733138..122733178,+#_737b8a37cd50ac2efeee3b652fd78764p3@CRTAM
3.19e-78FFCP PHASE2:Hg19::chr5:20575610..20575619,-#_737b8a37cd50ac2efeee3b652fd78764p11@CDH18
3.19e-78FFCP PHASE1:Hg19::chr11:122733138..122733178,+#_737b8a37cd50ac2efeee3b652fd78764p3@CRTAM
3.19e-78FFCP PHASE1:Hg19::chr5:20575610..20575619,-#_737b8a37cd50ac2efeee3b652fd78764p11@CDH18
2.16e-70FFCP PHASE2:Hg19::chr9:135457457..135457468,+#_7e3337643e31246586c71cec46e4e062p4@BARHL1
2.16e-70FFCP PHASE1:Hg19::chr9:135457457..135457468,+#_7e3337643e31246586c71cec46e4e062p4@BARHL1
2.58e-70FFCP PHASE1:Hg19::chr17:72667518..72667529,+#_ca02317aaf8eb5cc04d7ae03993bc0f8p8@RAB37
2.58e-70FFCP PHASE1:Hg19::chr4:117873850..117873861,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr4:117873850..117873861, -
2.58e-70FFCP PHASE2:Hg19::chr20:30616906..30616921,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr20:30616906..30616921, -
2.58e-70FFCP PHASE1:Hg19::chr1:159842835..159842846,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p1@ENST00000536764
2.58e-70FFCP PHASE2:Hg19::chr1:159842835..159842846,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p1@ENST00000536764
2.58e-70FFCP PHASE2:Hg19::chr4:117873850..117873861,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr4:117873850..117873861, -
2.58e-70FFCP PHASE2:Hg19::chr17:72667518..72667529,+#_ca02317aaf8eb5cc04d7ae03993bc0f8p8@RAB37
2.58e-70FFCP PHASE1:Hg19::chr20:30616906..30616921,-#_ca02317aaf8eb5cc04d7ae03993bc0f8p@chr20:30616906..30616921, -
3.09e-70FFCP PHASE1:Hg19::chr20:62795787..62795793,+#_29c1661b54557a10961c301ad5d38e28p8@MYT1
3.09e-70FFCP PHASE1:Hg19::chr17:50235999..50236008,-#_29c1661b54557a10961c301ad5d38e28p21@CA10
3.09e-70FFCP PHASE2:Hg19::chr17:50235999..50236008,-#_29c1661b54557a10961c301ad5d38e28p21@CA10
3.09e-70FFCP PHASE2:Hg19::chr20:62795787..62795793,+#_29c1661b54557a10961c301ad5d38e28p8@MYT1
9.93e-69FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_9e2fad1a678a3bdbb1116c4bb4aee528p7@SEZ6L
9.93e-69FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_9e2fad1a678a3bdbb1116c4bb4aee528p7@SEZ6L
3.04e-66FFCP PHASE2:Hg19::chr2:72381655..72381673,-#_691e356e515347d87d1e0230c44a6615p@chr2:72381655..72381673, -
3.04e-66FFCP PHASE1:Hg19::chr2:72381655..72381673,-#_691e356e515347d87d1e0230c44a6615p@chr2:72381655..72381673, -
3.75e-66FFCP PHASE1:Hg19::chr11:64146203..64146207,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr11:64146203..64146207, +
3.75e-66FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_25bcc9108f32d57c85d5dd566f02fe40p20@EXPH5
3.75e-66FFCP PHASE1:Hg19::chr1:24526024..24526028,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:24526024..24526028, +
3.75e-66FFCP PHASE1:Hg19::chr12:72667119..72667130,+#_25bcc9108f32d57c85d5dd566f02fe40p16@TRHDE
3.75e-66FFCP PHASE1:Hg19::chr1:206611115..206611119,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:206611115..206611119, +
3.75e-66FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_25bcc9108f32d57c85d5dd566f02fe40p8@CRTAM
3.75e-66FFCP PHASE1:Hg19::chr13:100633194..100633202,+#_25bcc9108f32d57c85d5dd566f02fe40p6@AK298232
3.75e-66FFCP PHASE1:Hg19::chr14:79746650..79746659,+#_25bcc9108f32d57c85d5dd566f02fe40p23@NRXN3
3.75e-66FFCP PHASE1:Hg19::chr16:3656599..3656608,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:3656599..3656608, -
3.75e-66FFCP PHASE1:Hg19::chr19:6501233..6501243,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr19:6501233..6501243, -
3.75e-66FFCP PHASE1:Hg19::chr1:2241890..2241895,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:2241890..2241895, -
3.75e-66FFCP PHASE1:Hg19::chr1:228602576..228602587,-#_25bcc9108f32d57c85d5dd566f02fe40p1@CU689740
3.75e-66FFCP PHASE1:Hg19::chr16:49357829..49357832,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:49357829..49357832, +
3.75e-66FFCP PHASE1:Hg19::chr20:45062007..45062020,+#_25bcc9108f32d57c85d5dd566f02fe40p7@AK054905
3.75e-66FFCP PHASE1:Hg19::chr14:77582887..77582896,+#_25bcc9108f32d57c85d5dd566f02fe40p12@TMEM63C
3.75e-66FFCP PHASE1:Hg19::chr11:133821982..133821993,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr11:133821982..133821993, -
3.75e-66FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_25bcc9108f32d57c85d5dd566f02fe40p5@PCBP3
3.75e-66FFCP PHASE1:Hg19::chr11:133902562..133902580,+#_25bcc9108f32d57c85d5dd566f02fe40p1@ENST00000529070
3.75e-66FFCP PHASE1:Hg19::chr17:48545700..48545707,+#_25bcc9108f32d57c85d5dd566f02fe40p5@ACSF2
3.75e-66FFCP PHASE1:Hg19::chr17:39553443..39553452,-#_25bcc9108f32d57c85d5dd566f02fe40p2@KRT31
3.75e-66FFCP PHASE1:Hg19::chr17:72673771..72673779,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr17:72673771..72673779, -
3.75e-66FFCP PHASE1:Hg19::chr1:1953233..1953242,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:1953233..1953242, -
3.75e-66FFCP PHASE1:Hg19::chr16:23419354..23419361,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:23419354..23419361, +
3.75e-66FFCP PHASE1:Hg19::chr10:71562284..71562291,+#_25bcc9108f32d57c85d5dd566f02fe40p14@COL13A1
3.75e-66FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr18:8783620..8783627, +
3.75e-66FFCP PHASE1:Hg19::chr17:72667207..72667214,+#_25bcc9108f32d57c85d5dd566f02fe40p12@RAB37
3.75e-66FFCP PHASE1:Hg19::chr16:3656616..3656628,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:3656616..3656628, -
3.75e-66FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr21:47314143..47314154, -
3.75e-66FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_25bcc9108f32d57c85d5dd566f02fe40p9@GRAMD1B
3.75e-66FFCP PHASE1:Hg19::chr13:42792979..42793012,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr13:42792979..42793012, +
3.75e-66FFCP PHASE1:Hg19::chr17:72667483..72667484,+#_25bcc9108f32d57c85d5dd566f02fe40p18@RAB37
3.75e-66FFCP PHASE1:Hg19::chr1:59775752..59775763,+#_25bcc9108f32d57c85d5dd566f02fe40p19@FGGY
3.75e-66FFCP PHASE1:Hg19::chr16:608967..608994,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:608967..608994, +
3.75e-66FFCP PHASE1:Hg19::chr20:30616884..30616898,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr20:30616884..30616898, -
3.75e-66FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr22:17891551..17891560, +
3.75e-66FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr19:17992758..17992791, +
3.75e-66FFCP PHASE1:Hg19::chr10:122216316..122216327,+#_25bcc9108f32d57c85d5dd566f02fe40p5@PPAPDC1A
3.75e-66FFCP PHASE1:Hg19::chr14:60048980..60048989,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr14:60048980..60048989, -
3.75e-66FFCP PHASE1:Hg19::chr15:81489344..81489353,+#_25bcc9108f32d57c85d5dd566f02fe40p31@IL16
3.75e-66FFCP PHASE1:Hg19::chr16:87376991..87377002,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:87376991..87377002, -
3.75e-66FFCP PHASE1:Hg19::chr11:65999312..65999320,+#_25bcc9108f32d57c85d5dd566f02fe40p30@PACS1
3.75e-66FFCP PHASE1:Hg19::chr21:32624498..32624505,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr21:32624498..32624505, -
3.75e-66FFCP PHASE1:Hg19::chr16:87377029..87377039,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:87377029..87377039, -
3.75e-66FFCP PHASE1:Hg19::chr17:588406..588409,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr17:588406..588409, -
3.75e-66FFCP PHASE1:Hg19::chr20:45062215..45062225,+#_25bcc9108f32d57c85d5dd566f02fe40p4@AK054905
3.75e-66FFCP PHASE1:Hg19::chr1:46639505..46639517,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:46639505..46639517, +
3.75e-66FFCP PHASE1:Hg19::chr20:45062029..45062044,+#_25bcc9108f32d57c85d5dd566f02fe40p6@AK054905
3.75e-66FFCP PHASE1:Hg19::chr1:190445111..190445122,-#_25bcc9108f32d57c85d5dd566f02fe40p15@FAM5C
3.75e-66FFCP PHASE1:Hg19::chr1:244355163..244355179,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:244355163..244355179, +
3.75e-66FFCP PHASE1:Hg19::chr20:45061929..45061936,+#_25bcc9108f32d57c85d5dd566f02fe40p8@AK054905
3.75e-66FFCP PHASE1:Hg19::chr16:612039..612048,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr16:612039..612048, -
3.75e-66FFCP PHASE1:Hg19::chr13:100633107..100633110,+#_25bcc9108f32d57c85d5dd566f02fe40p7@AK298232
3.75e-66FFCP PHASE1:Hg19::chr14:24898354..24898366,-#_25bcc9108f32d57c85d5dd566f02fe40p8@CBLN3
3.75e-66FFCP PHASE1:Hg19::chr18:66918040..66918047,-#_25bcc9108f32d57c85d5dd566f02fe40p@chr18:66918040..66918047, -
3.75e-66FFCP PHASE1:Hg19::chr20:45062290..45062300,+#_25bcc9108f32d57c85d5dd566f02fe40p3@AK054905
3.75e-66FFCP PHASE1:Hg19::chr1:244355180..244355201,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:244355180..244355201, +
3.75e-66FFCP PHASE1:Hg19::chr11:104480062..104480069,-#_25bcc9108f32d57c85d5dd566f02fe40p3@ENST00000538641
3.75e-66FFCP PHASE1:Hg19::chr12:78430875..78430887,+#_25bcc9108f32d57c85d5dd566f02fe40p1@AB384547
3.75e-66FFCP PHASE1:Hg19::chr14:77582934..77582947,+#_25bcc9108f32d57c85d5dd566f02fe40p9@TMEM63C
3.75e-66FFCP PHASE1:Hg19::chr18:39687774..39687782,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr18:39687774..39687782, +
3.75e-66FFCP PHASE1:Hg19::chr20:45061641..45061646,-#_25bcc9108f32d57c85d5dd566f02fe40p13@ELMO2
3.75e-66FFCP PHASE1:Hg19::chr1:106499338..106499354,+#_25bcc9108f32d57c85d5dd566f02fe40p@chr1:106499338..106499354, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002680&oldid=1837639"