FF:443-27C5: Difference between revisions

Revision as of 00:36, 10 July 2012

Name:	testis, embryo E15
Species:	Mouse (Mus musculus)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	C57BL/6J
tissue	testis
dev stage	15 days embryo
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11034

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0749
1002	0.363
1003	-0.0745
1004	0
1005	-0.132
1006	-0.0582
1007	0.0483
1008	0
1009	0.00927
101	0.0999
1010	0
1011	0
1012	0
1013	-0.163
1014	0
1015	0.298
1016	0.377
1017	0
1018	0.0665
1019	0
102	0
1020	0
1021	0
1022	0
1023	0
1024	0
1025	0
1026	0
1027	0.00553
1028	0
1029	-0.0518
103	0.0557
1030	0
1031	0.242
1032	-0.0163
1033	0
1034	0
1035	0.0665
1036	-0.0236
1037	0
1038	-0.0566
1039	0.0195
104	0
1040	-0.0544
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11034

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0331
MA0003.1	MA0003.1	0.631
MA0004.1	MA0004.1	0.264
MA0006.1	MA0006.1	0.189
MA0007.1	MA0007.1	0.656
MA0009.1	MA0009.1	0.878
MA0014.1	MA0014.1	0.609
MA0017.1	MA0017.1	0.0182
MA0018.2	MA0018.2	0.604
MA0019.1	MA0019.1	0.326
MA0024.1	MA0024.1	1.18078e-7
MA0025.1	MA0025.1	0.547
MA0027.1	MA0027.1	0.144
MA0028.1	MA0028.1	8.87583e-4
MA0029.1	MA0029.1	0.678
MA0030.1	MA0030.1	0.0311
MA0031.1	MA0031.1	0.0905
MA0035.2	MA0035.2	0.264
MA0038.1	MA0038.1	0.0335
MA0039.2	MA0039.2	0.0423
MA0040.1	MA0040.1	0.332
MA0041.1	MA0041.1	0.379
MA0042.1	MA0042.1	0.414
MA0043.1	MA0043.1	0.661
MA0046.1	MA0046.1	3.63769e-24
MA0047.2	MA0047.2	0.08
MA0048.1	MA0048.1	0.0185
MA0050.1	MA0050.1	2.09459e-4
MA0051.1	MA0051.1	4.80874e-4
MA0052.1	MA0052.1	0.00452
MA0055.1	MA0055.1	4.75198e-4
MA0057.1	MA0057.1	0.387
MA0058.1	MA0058.1	0.0706
MA0059.1	MA0059.1	0.0605
MA0060.1	MA0060.1	5.51409e-15
MA0061.1	MA0061.1	0.109
MA0062.2	MA0062.2	0.00603
MA0065.2	MA0065.2	0.0483
MA0066.1	MA0066.1	0.0911
MA0067.1	MA0067.1	0.646
MA0068.1	MA0068.1	0.0348
MA0069.1	MA0069.1	0.827
MA0070.1	MA0070.1	0.439
MA0071.1	MA0071.1	0.586
MA0072.1	MA0072.1	0.427
MA0073.1	MA0073.1	0.845
MA0074.1	MA0074.1	0.655
MA0076.1	MA0076.1	6.1391e-4
MA0077.1	MA0077.1	0.548
MA0078.1	MA0078.1	0.593
MA0079.2	MA0079.2	0.488
MA0080.2	MA0080.2	1.53644e-5
MA0081.1	MA0081.1	0.887
MA0083.1	MA0083.1	0.0815
MA0084.1	MA0084.1	0.925
MA0087.1	MA0087.1	0.546
MA0088.1	MA0088.1	0.521
MA0090.1	MA0090.1	0.79
MA0091.1	MA0091.1	0.659
MA0092.1	MA0092.1	0.485
MA0093.1	MA0093.1	0.207
MA0099.2	MA0099.2	1.37722e-4
MA0100.1	MA0100.1	0.399
MA0101.1	MA0101.1	0.626
MA0102.2	MA0102.2	0.091
MA0103.1	MA0103.1	0.00101
MA0104.2	MA0104.2	0.0128
MA0105.1	MA0105.1	0.0257
MA0106.1	MA0106.1	0.608
MA0107.1	MA0107.1	0.168
MA0108.2	MA0108.2	0.0671
MA0111.1	MA0111.1	0.176
MA0112.2	MA0112.2	0.00514
MA0113.1	MA0113.1	0.869
MA0114.1	MA0114.1	0.0122
MA0115.1	MA0115.1	0.363
MA0116.1	MA0116.1	0.382
MA0117.1	MA0117.1	0.0952
MA0119.1	MA0119.1	0.432
MA0122.1	MA0122.1	0.86
MA0124.1	MA0124.1	0.315
MA0125.1	MA0125.1	0.944
MA0131.1	MA0131.1	0.278
MA0135.1	MA0135.1	0.902
MA0136.1	MA0136.1	0.122
MA0137.2	MA0137.2	0.405
MA0138.2	MA0138.2	0.00233
MA0139.1	MA0139.1	0.729
MA0140.1	MA0140.1	0.244
MA0141.1	MA0141.1	0.0342
MA0142.1	MA0142.1	0.415
MA0143.1	MA0143.1	0.253
MA0144.1	MA0144.1	0.311
MA0145.1	MA0145.1	0.028
MA0146.1	MA0146.1	0.22
MA0147.1	MA0147.1	0.00945
MA0148.1	MA0148.1	0.00703
MA0149.1	MA0149.1	0.633
MA0150.1	MA0150.1	0.00234
MA0152.1	MA0152.1	0.701
MA0153.1	MA0153.1	7.91459e-16
MA0154.1	MA0154.1	0.0591
MA0155.1	MA0155.1	0.819
MA0156.1	MA0156.1	0.63
MA0157.1	MA0157.1	0.106
MA0159.1	MA0159.1	9.5101e-4
MA0160.1	MA0160.1	0.317
MA0162.1	MA0162.1	0.317
MA0163.1	MA0163.1	0.711
MA0164.1	MA0164.1	0.381
MA0258.1	MA0258.1	0.00306
MA0259.1	MA0259.1	0.0478

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11034

Novel motif	Logo	P-value
1	1	0.181
10	10	0.589
100	100	0.506
101	101	0.639
102	102	0.549
103	103	0.44
104	104	0.988
105	105	0.172
106	106	6.43075e-4
107	107	0.0172
108	108	0.964
109	109	0.802
11	11	0.586
110	110	0.703
111	111	0.516
112	112	0.399
113	113	0.306
114	114	0.177
115	115	0.577
116	116	0.688
117	117	0.46
118	118	0.703
119	119	0.261
12	12	0.655
120	120	0.656
121	121	0.534
122	122	0.913
123	123	0.193
124	124	0.0665
125	125	0.0943
126	126	0.989
127	127	0.239
128	128	8.21339e-4
129	129	0.031
13	13	0.668
130	130	0.236
131	131	0.813
132	132	0.183
133	133	0.864
134	134	0.249
135	135	0.981
136	136	0.0724
137	137	0.662
138	138	0.693
139	139	0.116
14	14	0.129
140	140	0.457
141	141	0.0484
142	142	0.886
143	143	0.116
144	144	0.088
145	145	0.973
146	146	0.363
147	147	0.377
148	148	0.0612
149	149	0.371
15	15	0.184
150	150	0.953
151	151	0.0427
152	152	0.648
153	153	0.244
154	154	0.93
155	155	0.666
156	156	6.94651e-5
157	157	0.591
158	158	0.227
159	159	0.0504
160	160	0.884
161	161	0.75
162	162	0.636
163	163	0.073
164	164	0.615
165	165	0.168
166	166	0.918
167	167	0.794
168	168	0.181
169	169	0.78
17	17	0.141
18	18	0.235
19	19	0.866
2	2	0.396
20	20	0.374
21	21	0.477
22	22	0.874
23	23	0.0399
24	24	0.652
25	25	0.4
26	26	0.939
27	27	0.224
28	28	0.252
29	29	0.521
3	3	0.407
30	30	0.714
31	31	0.163
32	32	0.192
33	33	0.404
34	34	0.989
35	35	0.0664
36	36	0.698
37	37	0.405
38	38	0.831
39	39	0.836
4	4	0.711
40	40	0.765
41	41	0.245
42	42	0.701
43	43	0.221
44	44	0.392
45	45	0.354
46	46	0.192
47	47	0.549
48	48	0.512
49	49	0.128
5	5	0.072
50	50	0.832
51	51	0.805
52	52	0.139
53	53	0.634
54	54	0.373
55	55	0.744
56	56	0.253
57	57	0.9
58	58	0.299
59	59	0.394
6	6	0.833
60	60	0.0336
61	61	0.593
62	62	0.166
63	63	0.215
64	64	0.885
65	65	0.255
66	66	0.312
67	67	0.345
68	68	5.76279e-4
69	69	0.707
7	7	0.444
70	70	0.0167
71	71	0.367
72	72	0.896
73	73	0.855
74	74	0.452
75	75	0.957
76	76	0.364
77	77	0.443
78	78	0.328
79	79	0.861
8	8	0.507
80	80	0.158
81	81	0.256
82	82	0.48
83	83	0.642
84	84	0.146
85	85	0.00771
86	86	0.316
87	87	0.213
88	88	0.675
89	89	0.0352
9	9	0.643
90	90	0.26
91	91	0.285
92	92	0.0629
93	93	0.645
94	94	0.176
95	95	0.361
96	96	0.395
97	97	0.891
98	98	0.0724
99	99	0.653

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11034

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011352 mouse testis- embryo E15 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000298 (mouse embryonic day 15 sample)
0011352 (mouse testis- embryo E15 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr1:140739014..140739032,-!p1@Lhx9!2.19!191.27!Lhx9;;chr10:22539932..22539956,-!p1@Tcf21!2.05!283.10!Tcf21;;chr2:38570011..38570034,-!p1@Nr5a1!2.03!106.89!Nr5a1;;chr7:147129712..147129774,+!p1@Utf1!2.03!105.73!Utf1;;chrX:90531838..90531861,+!p1@Arx!1.94!106.56!Arx;;chr14:63864056..63864102,-!p1@Gata4!1.83!113.67!Gata4;;chr15:102828658..102828678,+!p1@Hoxc6!1.57!35.74!Hoxc6;;chr17:35642997..35643014,+!p1@Pou5f1!1.55!34.58!Pou5f1;;chr2:74549968..74549996,+!p1@Hoxd3!1.48!36.24!Hoxd3;;chr2:74529970..74529997,+!p1@Hoxd10!1.44!26.47!Hoxd10;;chr17:35642973..35642994,+!p2@Pou5f1!1.43!25.65!Pou5f1;;chr2:104966766..104966786,+!p1@Wt1!1.33!31.93!Wt1;;chr2:74536026..74536039,+!p1@Hoxd9!1.33!20.52!Hoxd9;;chr2:104966874..104966907,+!p2@Wt1!1.29!18.37!Wt1;;chr7:147129680..147129693,+!p3@Utf1!1.23!16.05!Utf1;;chr3:54985946..54985981,+!p1@Sohlh2!1.22!15.72!Sohlh2;;chr19:59533221..59533271,+!p1@Emx2!1.21!18.70!Emx2;;chr7:147129777..147129814,+!p2@Utf1!1.20!14.89!Utf1;;chr11:85646303..85646329,+!p1@Tbx2!1.18!93.15!Tbx2;;chr19:25580110..25580163,+!p1@Dmrt1!1.18!14.23!Dmrt1;;chr10:126778916..126778974,-!p1@Gli1!1.17!30.61!Gli1;;chr1:168168856..168168893,-!p1@Mael!1.16!13.57!Mael;;chr10:119913278..119913298,-!p2@Hmga2!1.15!29.12!Hmga2;;chr2:104966933..104966966,+!p3@Wt1!1.13!12.57!Wt1;;chr2:74550015..74550057,+!p2@Hoxd3!1.13!12.41!Hoxd3;;chr11:85646263..85646278,+!p2@Tbx2!1.10!29.45!Tbx2;;chr8:26958093..26958148,-!p2@Ash2l!1.10!11.58!Ash2l;;chr2:74536050..74536065,+!p2@Hoxd9!1.09!11.42!Hoxd9;;chr12:34642510..34642530,+!p1@Twist1!1.02!30.44!Twist1;;chr10:119913310..119913366,-!p1@Hmga2!1.01!74.13!Hmga2;;chr15:35225845..35225867,+!p1@Osr2!1.00!23.16!Osr2;;chr6:122657610..122657626,+!p1@Nanog,p1@Nanogpd!1.00!9.10!Nanog;;chr14:63890459..63890484,-!p4@Gata4!1.00!8.93!Gata4;;chrX:83437105..83437121,+!p1@Nr0b1!0.99!8.77!Nr0b1;;chr2:152758901..152758925,-!p1@Foxs1!0.94!35.57!Foxs1;;chr11:85646341..85646352,+!p3@Tbx2!0.94!15.55!Tbx2;;chr14:63890491..63890516,-!p2@Gata4!0.94!7.78!Gata4;;chr9:44249274..44249313,-!p1@Foxr1!0.93!7.45!Foxr1;;chr2:74529998..74530020,+!p2@Hoxd10!0.93!7.45!Hoxd10;;chr15:102828642..102828653,+!p2@Hoxc6!0.92!7.28!Hoxc6;;chr17:25707623..25707639,-!p1@Sox8!0.90!30.78!Sox8;;chr2:38567715..38567730,-!p2@Nr5a1!0.89!6.78!Nr5a1;;chr14:63864337..63864381,-!p6@Gata4!0.88!6.62!Gata4;;chr19:59533139..59533152,+!p2@Emx2!0.86!6.29!Emx2;;chr7:147129659..147129668,+!p4@Utf1!0.85!6.12!Utf1;;chr10:119913546..119913583,-!p3@Hmga2!0.83!12.74!Hmga2;;chr10:119914001..119914078,-!p4@Hmga2!0.83!7.94!Hmga2;;chr2:74536071..74536083,+!p4@Hoxd9!0.81!5.46!Hoxd9;;chr4:133109285..133109308,+!p1@Nr0b2!0.80!5.29!Nr0b2;;chr7:6649134..6649167,-!p1@Zim1!0.79!30.28!Zim1;;chrX:45245679..45245702,-!p1@Smarca1!0.79!24.82!Smarca1;;chr1:168168817..168168850,-!p2@Mael!0.79!5.13!Mael;;chr5:31271028..31271040,+!p1@Tcf23!0.79!5.13!Tcf23;;chr12:87811059..87811072,+!p3@Esrrb!0.79!5.13!Esrrb;;chr7:25292076..25292114,+!p4@Zfp428!0.78!14.89!Zfp428;;chr14:63890660..63890687,-!p7@Gata4!0.78!4.96!Gata4;;chr19:59533429..59533470,+!p4@Emx2!0.78!4.96!Emx2;;chr7:77511403..77511450,-!p3@Nr2f2!0.77!11.09!Nr2f2;;chr3:34548909..34548927,+!p1@Sox2!0.77!8.77!Sox2;;chr10:80809447..80809515,-!p5@Hmg20b!0.77!6.12!Hmg20b;;chr4:122911086..122911112,+!p1@Heyl!0.76!61.22!Heyl;;chr2:152758938..152758954,-!p2@Foxs1!0.76!6.78!Foxs1;;chr2:104966465..104966479,+!p6@Wt1!0.76!4.80!Wt1;;chr14:49282415..49282426,-!p4@Otx2!0.76!4.80!Otx2;;chr12:3891810..3891829,+!p2@Dnmt3a!0.75!7.61!Dnmt3a;;chr15:40486883..40486903,+!p4@Zfpm2!0.75!6.45!Zfpm2;;chr14:27813852..27813865,+!p1@Hesx1!0.75!4.63!Hesx1;;chr8:59799772..59799789,+!p1@Hand2!0.74!14.06!Hand2;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.72!11.09!Zbtb11;;chr19:59533163..59533185,+!p3@Emx2!0.72!4.30!Emx2;;chr2:91864300..91864379,-!p2@Creb3l1!0.71!12.91!Creb3l1;;chr2:180377386..180377462,-!p1@Tcfl5!0.71!5.13!Tcfl5;;chr2:104966662..104966673,+!p4@Wt1!0.71!4.14!Wt1;;chr7:77505617..77505632,-!p1@Nr2f2!0.70!214.43!Nr2f2;;chr1:38684260..38684312,-!p2@Aff3!0.70!31.77!Aff3;;chr18:11052456..11052477,+!p3@Gata6!0.70!13.73!Gata6;;chr12:3891753..3891801,+!p4@Dnmt3a!0.70!6.95!Dnmt3a;;chr2:74549945..74549965,+!p4@Hoxd3!0.70!3.97!Hoxd3;;chr8:87425854..87425891,+!p1@Klf1!0.70!3.97!Klf1;;chr7:52471143..52471186,+!p1@Tead2!0.69!47.16!Tead2;;chr1:120879128..120879183,-!p3@Gli2!0.69!7.94!Gli2;;chr12:28027561..28027591,-!p1@Sox11!0.68!28.29!Sox11;;chr7:25292141..25292158,+!p2@Zfp428!0.68!14.73!Zfp428;;chr4:84321300..84321315,-!p2@Bnc2!0.68!4.80!Bnc2;;chr1:140739042..140739054,-!p2@Lhx9!0.68!3.81!Lhx9;;chr7:89137163..89137200,-!p1@Bnc1!0.67!4.63!Bnc1;;chr2:74535796..74535808,+!p3@Hoxd9!0.67!3.64!Hoxd9;;chr14:63890691..63890718,-!p8@Gata4!0.67!3.64!Gata4;;chr14:63890519..63890539,-!p3@Gata4!0.67!3.64!Gata4;;chr12:87811081..87811100,+!p2@Esrrb!0.67!3.64!Esrrb;;chr2:104966909..104966920,+!p8@Wt1!0.67!3.64!Wt1;;chr19:25580272..25580305,+!p3@Dmrt1!0.67!3.64!Dmrt1;;chr15:76701495..76701535,-!p3@Zfp251!0.67!3.64!Zfp251;;chr17:71202822.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3174485..123174514,-!p6@Sox6!0.13!0.66!Sox6;;chr5:24107903..24107917,-!p6@Smarcd3!0.13!0.66!Smarcd3;;chr10:44178575..44178590,-!p5@Prdm1!0.13!0.66!Prdm1;;chr3:90046995..90047031,-!p2@Creb3l4!0.13!0.66!Creb3l4;;chr15:81633224..81633235,+!p5@Tef!0.13!0.66!Tef;;chr3:29912154..29912168,-!p11@Mecom!0.13!0.50!Mecom;;chr11:99091744..99091778,-!p1@Smarce1!0.12!50.30!Smarce1;;chr15:102301149..102301221,+!p2@Pcbp2!0.12!44.18!Pcbp2;;chr4:108132605..108132635,+!p1@Zcchc11!0.12!43.68!Zcchc11;;chr17:57074836..57074927,-!p1@Mllt1!0.12!31.93!Mllt1;;chr11:98798983..98799049,+!p1@Rara!0.12!29.95!Rara;;chr6:29997979..29998049,+!p1@Nrf1!0.12!21.34!Nrf1;;chr16:84835146..84835186,+!p2@Gabpa!0.12!15.22!Gabpa;;chr7:134565516..134565573,-!p1@Zfp688!0.12!13.24!Zfp688;;chr7:17199897..17199955,-!p1@Grlf1!0.12!12.74!Grlf1;;chr5:143942400..143942474,-!p1@Rbak!0.12!11.91!Rbak;;chr8:97856080..97856150,-!p2@Zfp319!0.12!6.12!Zfp319;;chr18:24178808..24178865,-!p2@Zfp191!0.12!5.63!Zfp191;;chr2:181022721..181022746,-!p2@Gmeb2!0.12!5.63!Gmeb2;;chr10:82226833..82226864,-!p3@Nfyb!0.12!5.46!Nfyb;;chr12:75008946..75008957,+!p2@Hif1a!0.12!5.29!Hif1a;;chr6:47827619..47827639,+!p2@Zfp282!0.12!4.30!Zfp282;;chrX:132420488..132420517,+!p4@Bhlhb9!0.12!4.30!Bhlhb9;;chr17:45570455..45570479,-!p2@Cdc5l!0.12!3.64!Cdc5l;;chr4:150482563..150482655,-!p2@Camta1!0.12!3.47!Camta1;;chr2:168032763..168032802,-!p3@Adnp!0.12!3.31!Adnp;;chr4:122673278..122673336,+!p1@Mycl1!0.12!2.98!Mycl1;;chr2:44966659..44966675,-!p7@Zeb2!0.12!2.65!Zeb2;;chr7:87171233..87171255,+!p3@Zfp710!0.12!2.48!Zfp710;;chr18:83080255..83080277,+!p4@Zfp516!0.12!2.15!Zfp516;;chr5:107125778..107125803,-!p4@Zfp644!0.12!1.82!Zfp644;;chr4:87452180..87452196,-!p3@Mllt3!0.12!1.49!Mllt3;;chr13:44825008..44825066,+!p5@Jarid2!0.12!1.49!Jarid2;;chr11:101645830..101645881,-!p2@Etv4!0.12!1.32!Etv4;;chr8:112603658..112603674,+!p2@Zfp612!0.12!1.32!Zfp612;;chr15:81633139..81633152,+!p4@Tef!0.12!1.16!Tef;;chr17:37139455..37139469,+!p3@Zfp57!0.12!0.99!Zfp57;;chr9:110034493..110034502,+!p2@Smarcc1!0.12!0.99!Smarcc1;;chr13:67476665..67476693,-!p2@Zfp456!0.12!0.99!Zfp456;;chr11:99092002..99092018,-!p6@Smarce1!0.12!0.99!Smarce1;;chr7:91558472..91558512,-!p2@Arnt2!0.12!0.83!Arnt2;;chr4:102792039..102792052,+!p7@Mier1!0.12!0.83!Mier1;;chr13:112476264..112476282,+!p3@Mier3!0.12!0.83!Mier3;;chr10:119913839..119913869,-!p7@Hmga2!0.12!0.66!Hmga2;;chr16:3744192..3744206,+!p4@Zfp263!0.12!0.66!Zfp263;;chr5:125538905..125538910,-!p4@Ncor2!0.12!0.66!Ncor2;;chr6:128250380..128250442,-!p2@Tead4!0.12!0.66!Tead4;;chr6:145813964..145813994,-!p3@Bhlhe41!0.12!0.66!Bhlhe41;;chrX:48559055..48559077,-!p6@Mbnl3!0.12!0.66!Mbnl3;;chr1:181733959..181733977,-!p4@Ahctf1!0.12!0.66!Ahctf1;;chr1:33871240..33871251,-!p5@Zfp451!0.12!0.66!Zfp451;;chr7:38558544..38558566,-!p4@Zfp536!0.12!0.50!Zfp536;;chr3:30993641..30993651,+!p7@Skil!0.12!0.50!Skil;;chr3:128916838..128916856,+!p4@Pitx2!0.12!0.33!Pitx2;;chr4:13669922..13669957,+!p13@Runx1t1!0.12!0.33!Runx1t1;;chr4:119960275..119960288,-!p2@Foxo6!0.12!0.33!Foxo6;;chr4:13678723..13678739,+!p10@Runx1t1!0.12!0.33!Runx1t1;;chr3:29911947..29911958,-!p14@Mecom!0.12!0.33!Mecom;;chr4:150482353..150482386,-!p6@Camta1!0.12!0.33!Camta1;;chr4:108132386..108132400,+!p14@Zcchc11!0.12!0.33!Zcchc11;;chr2:73110004..73110016,+!p2@Sp9!0.12!0.33!Sp9;;chr4:89354785..89354801,+!p2@Dmrta1!0.12!0.33!Dmrta1;;chr4:87452236..87452249,-!p9@Mllt3!0.12!0.33!Mllt3;;chr2:77654793..77654805,-!p7@Zfp385b!0.12!0.33!Zfp385b;;chr2:74542882..74542894,+!p10@Hoxd8!0.12!0.33!Hoxd8;;chr1:138850177..138850182,-!p11@Nr5a2!0.12!0.33!Nr5a2;;chr1:135557400..135557421,-!p4@Zbed6!0.12!0.33!Zbed6;;chr1:186556307..186556318,-!p7@Hlx!0.12!0.33!Hlx;;chr1:140744193..140744208,-!p4@Lhx9!0.12!0.33!Lhx9;;
+|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:443-27C5: Difference between revisions

From FANTOM5_SSTAR

Revision as of 00:36, 10 July 2012

CNhs11034

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0