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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!5.01e-16!47;UBERON:0000160!7.22e-15!31;UBERON:0007100!8.53e-10!18;UBERON:0000948!8.53e-10!18;UBERON:0005498!8.53e-10!18;UBERON:0004140!8.53e-10!18;UBERON:0009881!8.53e-10!18;UBERON:0004141!8.53e-10!18;UBERON:0003084!8.53e-10!18;UBERON:0007005!8.53e-10!18;UBERON:0004139!8.53e-10!18;UBERON:0004291!8.53e-10!18;UBERON:0002323!8.62e-10!37;UBERON:0004458!8.62e-10!37;UBERON:0003886!3.00e-09!38;UBERON:0001264!6.43e-09!12;UBERON:0002553!9.66e-09!39;UBERON:0000466!1.47e-08!79;UBERON:0004535!1.66e-07!23;UBERON:0001009!1.66e-07!23;UBERON:0003914!4.14e-07!47;UBERON:0001007!4.58e-07!116;UBERON:0001555!4.58e-07!116;UBERON:0007026!4.58e-07!116;UBERON:0004119!5.26e-07!118;UBERON:0000925!5.26e-07!118;UBERON:0006595!5.26e-07!118
}}
}}

Revision as of 19:14, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:63890491..63890516,-p2@Gata4
Mm9::chr14:63890519..63890539,-p3@Gata4
Mm9::chr14:63890545..63890560,-p5@Gata4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
gastrointestinal system5.01e-1647
intestine7.22e-1531
primary circulatory organ8.53e-1018
heart8.53e-1018
primitive heart tube8.53e-1018
primary heart field8.53e-1018
anterior lateral plate mesoderm8.53e-1018
heart tube8.53e-1018
heart primordium8.53e-1018
cardiac mesoderm8.53e-1018
cardiogenic plate8.53e-1018
heart rudiment8.53e-1018
body cavity8.62e-1037
body cavity or lining8.62e-1037
body cavity precursor3.00e-0938
pancreas6.43e-0912
anatomical cavity9.66e-0939
immaterial anatomical entity1.47e-0879
cardiovascular system1.66e-0723
circulatory system1.66e-0723
epithelial tube4.14e-0747
digestive system4.58e-07116
digestive tract4.58e-07116
primitive gut4.58e-07116
endoderm-derived structure5.26e-07118
endoderm5.26e-07118
presumptive endoderm5.26e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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