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MCL coexpression mm9:3576: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002048!1.88e-12!14;UBERON:0000117!1.88e-12!14;UBERON:0000171!1.88e-12!14;UBERON:0000170!1.88e-12!14;UBERON:0005597!1.88e-12!14;UBERON:0000118!1.88e-12!14;UBERON:0000970!1.13e-11!9;UBERON:0000019!1.13e-11!9;UBERON:0000047!1.13e-11!9;UBERON:0010312!1.13e-11!9;UBERON:0004088!1.13e-11!9;UBERON:0002104!1.13e-11!9;UBERON:0001456!1.13e-11!9;UBERON:0003072!1.13e-11!9;UBERON:0004128!1.13e-11!9;UBERON:0003071!1.13e-11!9;UBERON:0000020!7.47e-11!12;UBERON:0001032!7.47e-11!12;UBERON:0004456!7.47e-11!12;UBERON:0000033!9.52e-10!13;UBERON:0005085!9.52e-10!13;UBERON:0005153!1.66e-09!17;UBERON:0005178!1.66e-09!17;UBERON:0005181!1.66e-09!17;UBERON:0002224!1.66e-09!17;UBERON:0000915!1.66e-09!17;UBERON:0008947!1.66e-09!17;UBERON:0003258!1.66e-09!17;UBERON:0001444!5.15e-09!11;UBERON:0005157!1.77e-07!20
}}
}}

Revision as of 20:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:83187515..83187555,+p2@Slc4a5
Mm9::chr6:83187556..83187574,+p1@Slc4a5
Mm9::chr6:83187643..83187655,+p3@Slc4a5


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
lung1.88e-1214
respiratory tube1.88e-1214
respiration organ1.88e-1214
pair of lungs1.88e-1214
lung primordium1.88e-1214
lung bud1.88e-1214
eye1.13e-119
camera-type eye1.13e-119
simple eye1.13e-119
immature eye1.13e-119
ocular region1.13e-119
visual system1.13e-119
face1.13e-119
optic cup1.13e-119
optic vesicle1.13e-119
eye primordium1.13e-119
sense organ7.47e-1112
sensory system7.47e-1112
entire sense organ system7.47e-1112
head9.52e-1013
ectodermal placode9.52e-1013
epithelial bud1.66e-0917
thoracic cavity element1.66e-0917
thoracic segment organ1.66e-0917
thoracic cavity1.66e-0917
thoracic segment of trunk1.66e-0917
respiratory primordium1.66e-0917
endoderm of foregut1.66e-0917
subdivision of head5.15e-0911
epithelial fold1.77e-0720


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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