FFCP PHASE1:Hg19::chr11:118754592..118754621,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=643|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1060|TSSclassifier=S|UniProt=|association_with_transcript=51bp_to_uc001pue.3_5end|description=CAGE_peak_1_at_CXCR5_5end|id=chr11:118754592..118754621,+|ontology_enrichment_celltype=CL:0000542!4.96e-43!53;CL:0000051!4.96e-43!53;CL:0000838!1.25e-41!52;CL:0002087!3.74e-41!119;CL:0000738!1.37e-40!140;CL:0002031!1.47e-32!124;CL:0000945!2.92e-29!24;CL:0000826!2.92e-29!24;CL:0000037!1.13e-28!172;CL:0000566!1.13e-28!172;CL:0000988!7.69e-26!182;CL:0002032!2.62e-25!165;CL:0000837!2.62e-25!165;CL:0000236!1.72e-19!14;CL:0000791!1.02e-14!18;CL:0000789!1.02e-14!18;CL:0002420!1.02e-14!18;CL:0002419!1.02e-14!18;CL:0000790!1.02e-14!18;CL:0000084!3.62e-12!25;CL:0000827!3.62e-12!25;CL:0000624!1.82e-09!6;CL:0000625!1.79e-08!11;CL:0002057!1.82e-07!42|ontology_enrichment_celltype_v019=CL:0000945;1.49e-37;24!CL:0000236;1.56e-29;13!CL:0000542;1.36e-22;53!CL:0000624;1.25e-14;6!CL:0002087;1.44e-09;104!CL:0000226;2.60e-08;3!CL:0000842;2.60e-08;3!CL:0000898;3.92e-08;3!CL:0000791;2.34e-07;18!CL:0000789;2.34e-07;18!CL:0002419;2.34e-07;18|ontology_enrichment_celltype_v019_2=CL:0000945,1.50e-37,24;CL:0000826,1.50e-37,24;CL:0000542,5.39e-37,53;CL:0000051,5.39e-37,53;CL:0000838,4.41e-35,52;CL:0000236,1.26e-31,14;CL:0002087,4.72e-26,115;CL:0000738,4.62e-24,136;CL:0002031,7.67e-19,120;CL:0000037,2.85e-17,168;CL:0000988,8.14e-16,177;CL:0002032,3.01e-15,161;CL:0000837,3.01e-15,161;CL:0000624,1.22e-14,6;CL:0000226,2.77e-08,3;CL:0000842,2.77e-08,3;CL:0000898,3.65e-08,3;CL:0000791,2.19e-07,18;CL:0000789,2.19e-07,18;CL:0002420,2.19e-07,18;CL:0002419,2.19e-07,18;CL:0000790,2.19e-07,18|ontology_enrichment_development_v019=CL:0000051;1.36e-22;53!CL:0000790;2.34e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!1.35e-13!15;UBERON:0000179!1.35e-13!15;UBERON:0000463!1.35e-13!15;UBERON:0002390!1.65e-13!102;UBERON:0003061!1.65e-13!102;UBERON:0002193!4.33e-13!112;UBERON:0004177!8.61e-08!7;UBERON:0007023!7.52e-07!115|ontology_enrichment_uberon_v019=UBERON:0000178;2.49e-22;15!UBERON:0000179;2.49e-22;15!UBERON:0000463;2.49e-22;15!UBERON:0002390;2.55e-17;32!UBERON:0002193;1.67e-12;42!UBERON:0002106;1.08e-08;3!UBERON:0004177;2.03e-08;5!UBERON:0005057;2.03e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.50e-22,15;UBERON:0000179,2.50e-22,15;UBERON:0000463,2.50e-22,15;UBERON:0002193,2.53e-10,108;UBERON:0002390,7.15e-10,98;UBERON:0003061,7.15e-10,98;UBERON:0004177,5.92e-09,7;UBERON:0005057,5.92e-09,7;UBERON:0002106,1.06e-08,3;UBERON:0004854,1.06e-08,3;UBERON:0009034,1.06e-08,3;UBERON:0002095,1.06e-08,3;UBERON:0004782,1.06e-08,3;UBERON:0003281,1.06e-08,3;UBERON:0009664,1.06e-08,3;UBERON:0002296,1.06e-08,3;UBERON:0005602,1.06e-08,3;UBERON:0001179,1.06e-08,3;UBERON:0006293,1.06e-08,3;UBERON:0007023,4.29e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458480434487708,0.246301768349837,0.472264687882075,1.18009283054671,0.767658796194425,1.23852898652861,0,0,0,52.6776963946051,22.7470771979874,0,0.553995408531877,0.601633342410425,0,0.223915474239924,0.971680998056939,0,0.145398238779565,0.755751887377619,0,0,0.411167888021826,0,0.28769239232215,1.2808035326455,0.236482229888585,0.344745680736619,0.645484683583826,1.35426486594342,0,1.36453075028923,0,0,0.962787081228281,0.639337125799041,0,1.59570926097305,0,0,1.13477044938228,0,0,2.60741459210101,0.868755378820466,0,2.57794345191295,0.316462387440884,0,0,0,0,0,0,0,0,0,98.5578968983407,96.1203955821351,81.834851355447,90.893537406666,89.2883051090308,96.5584099123532,96.5125514265899,72.5080853446877,132.057408833392,186.741426219959,164.377488093848,5.28685314316103,9.52864557068611,0,2.360517241366,5.10913991573914,8.42966145897988,0.167186495390678,8.79990119910694,7.101717086021,1.94826728407911,0.557052284425868,2.65145316727353,2.21533894583621,1.08321545506006,0,0.130059347559878,0,0,0,0.296573126324121,0,0,0.113309342697566,4.21542542962113,3.4362744548263,4.55435445635105,0.637130828648193,0.651083453856419,0.950452044448374,1.20460095262218,0.895906278080929,0,1.89421801635213,0,0.604820229674197,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.327447688744282,0,0,0,0,0.398873881556595,1.19245312152671,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,1.2937654491571,1.41177339907723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,8.06395301879261,3.23571301227925,7.25747393063422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=643 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1060 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=51bp_to_uc001pue.3_5end | |||
|description=CAGE_peak_1_at_CXCR5_5end | |||
|id=chr11:118754592..118754621,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.96e-43!53;CL:0000051!4.96e-43!53;CL:0000838!1.25e-41!52;CL:0002087!3.74e-41!119;CL:0000738!1.37e-40!140;CL:0002031!1.47e-32!124;CL:0000945!2.92e-29!24;CL:0000826!2.92e-29!24;CL:0000037!1.13e-28!172;CL:0000566!1.13e-28!172;CL:0000988!7.69e-26!182;CL:0002032!2.62e-25!165;CL:0000837!2.62e-25!165;CL:0000236!1.72e-19!14;CL:0000791!1.02e-14!18;CL:0000789!1.02e-14!18;CL:0002420!1.02e-14!18;CL:0002419!1.02e-14!18;CL:0000790!1.02e-14!18;CL:0000084!3.62e-12!25;CL:0000827!3.62e-12!25;CL:0000624!1.82e-09!6;CL:0000625!1.79e-08!11;CL:0002057!1.82e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.49e-37;24!CL:0000236;1.56e-29;13!CL:0000542;1.36e-22;53!CL:0000624;1.25e-14;6!CL:0002087;1.44e-09;104!CL:0000226;2.60e-08;3!CL:0000842;2.60e-08;3!CL:0000898;3.92e-08;3!CL:0000791;2.34e-07;18!CL:0000789;2.34e-07;18!CL:0002419;2.34e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.50e-37,24;CL:0000826,1.50e-37,24;CL:0000542,5.39e-37,53;CL:0000051,5.39e-37,53;CL:0000838,4.41e-35,52;CL:0000236,1.26e-31,14;CL:0002087,4.72e-26,115;CL:0000738,4.62e-24,136;CL:0002031,7.67e-19,120;CL:0000037,2.85e-17,168;CL:0000988,8.14e-16,177;CL:0002032,3.01e-15,161;CL:0000837,3.01e-15,161;CL:0000624,1.22e-14,6;CL:0000226,2.77e-08,3;CL:0000842,2.77e-08,3;CL:0000898,3.65e-08,3;CL:0000791,2.19e-07,18;CL:0000789,2.19e-07,18;CL:0002420,2.19e-07,18;CL:0002419,2.19e-07,18;CL:0000790,2.19e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;1.36e-22;53!CL:0000790;2.34e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.35e-13!15;UBERON:0000179!1.35e-13!15;UBERON:0000463!1.35e-13!15;UBERON:0002390!1.65e-13!102;UBERON:0003061!1.65e-13!102;UBERON:0002193!4.33e-13!112;UBERON:0004177!8.61e-08!7;UBERON:0007023!7.52e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.49e-22;15!UBERON:0000179;2.49e-22;15!UBERON:0000463;2.49e-22;15!UBERON:0002390;2.55e-17;32!UBERON:0002193;1.67e-12;42!UBERON:0002106;1.08e-08;3!UBERON:0004177;2.03e-08;5!UBERON:0005057;2.03e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.50e-22,15;UBERON:0000179,2.50e-22,15;UBERON:0000463,2.50e-22,15;UBERON:0002193,2.53e-10,108;UBERON:0002390,7.15e-10,98;UBERON:0003061,7.15e-10,98;UBERON:0004177,5.92e-09,7;UBERON:0005057,5.92e-09,7;UBERON:0002106,1.06e-08,3;UBERON:0004854,1.06e-08,3;UBERON:0009034,1.06e-08,3;UBERON:0002095,1.06e-08,3;UBERON:0004782,1.06e-08,3;UBERON:0003281,1.06e-08,3;UBERON:0009664,1.06e-08,3;UBERON:0002296,1.06e-08,3;UBERON:0005602,1.06e-08,3;UBERON:0001179,1.06e-08,3;UBERON:0006293,1.06e-08,3;UBERON:0007023,4.29e-07,114 | |||
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|short_description=p1@CXCR5 | |||
}} |
Revision as of 16:04, 10 September 2013
Short description: | p1@CXCR5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CXCR5_5end |
Coexpression cluster: | NA |
Association with transcript: | 51bp_to_uc001pue.3_5end |
EntrezGene: | CXCR5 |
HGNC: | 1060 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.50e-37 | 24 |
pro-B cell | 1.50e-37 | 24 |
lymphocyte | 5.39e-37 | 53 |
common lymphoid progenitor | 5.39e-37 | 53 |
lymphoid lineage restricted progenitor cell | 4.41e-35 | 52 |
B cell | 1.26e-31 | 14 |
nongranular leukocyte | 4.72e-26 | 115 |
leukocyte | 4.62e-24 | 136 |
hematopoietic lineage restricted progenitor cell | 7.67e-19 | 120 |
hematopoietic stem cell | 2.85e-17 | 168 |
hematopoietic cell | 8.14e-16 | 177 |
hematopoietic oligopotent progenitor cell | 3.01e-15 | 161 |
hematopoietic multipotent progenitor cell | 3.01e-15 | 161 |
CD4-positive, alpha-beta T cell | 1.22e-14 | 6 |
single nucleate cell | 2.77e-08 | 3 |
mononuclear cell | 2.77e-08 | 3 |
naive T cell | 3.65e-08 | 3 |
mature alpha-beta T cell | 2.19e-07 | 18 |
alpha-beta T cell | 2.19e-07 | 18 |
immature T cell | 2.19e-07 | 18 |
mature T cell | 2.19e-07 | 18 |
immature alpha-beta T cell | 2.19e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
blood | 2.50e-22 | 15 |
haemolymphatic fluid | 2.50e-22 | 15 |
organism substance | 2.50e-22 | 15 |
hemolymphoid system | 2.53e-10 | 108 |
hematopoietic system | 7.15e-10 | 98 |
blood island | 7.15e-10 | 98 |
hemopoietic organ | 5.92e-09 | 7 |
immune organ | 5.92e-09 | 7 |
spleen | 1.06e-08 | 3 |
gastrointestinal system mesentery | 1.06e-08 | 3 |
stomach region | 1.06e-08 | 3 |
mesentery | 1.06e-08 | 3 |
gastrointestinal system serosa | 1.06e-08 | 3 |
mesentery of stomach | 1.06e-08 | 3 |
gut mesentery | 1.06e-08 | 3 |
dorsal mesentery | 1.06e-08 | 3 |
dorsal mesogastrium | 1.06e-08 | 3 |
peritoneal cavity | 1.06e-08 | 3 |
spleen primordium | 1.06e-08 | 3 |
adult organism | 4.29e-07 | 114 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.