FFCP PHASE1:Hg19::chr11:119993797..119993810,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23650|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17274|TSSclassifier=S|UniProt=|association_with_transcript=-56bp_to_ENST00000531555_5end|description=CAGE_peak_6_at_TRIM29_5end|id=chr11:119993797..119993810,-|ontology_enrichment_celltype=CL:0000066!4.49e-17!254;CL:0002076!6.72e-11!43;CL:0002251!8.83e-11!21;CL:0002159!7.39e-09!13;CL:0002150!5.45e-08!3;CL:0000861!5.45e-08!3;CL:0002621!4.47e-07!3;CL:0000223!9.82e-07!59|ontology_enrichment_celltype_v019=CL:0000575;8.72e-11;2|ontology_enrichment_celltype_v019_2=CL:0000575,8.29e-11,2;CL:0000066,4.12e-10,253|ontology_enrichment_development_v019=UBERON:0008947;2.73e-16;29|ontology_enrichment_disease=DOID:305!9.72e-12!106|ontology_enrichment_disease_v019=DOID:3111;6.96e-07;1!DOID:3603;6.96e-07;1|ontology_enrichment_disease_v019_2=DOID:305,6.19e-19,106;DOID:0050687,9.00e-13,143;DOID:162,2.58e-09,235;DOID:14566,5.25e-09,239;DOID:3111,6.96e-07,1;DOID:3603,6.96e-07,1|ontology_enrichment_uberon=UBERON:0001004!6.64e-22!72;UBERON:0001557!3.28e-20!19;UBERON:0001737!9.11e-20!9;UBERON:0000065!3.55e-16!53;UBERON:0004119!2.60e-15!169;UBERON:0000925!2.60e-15!169;UBERON:0006595!2.60e-15!169;UBERON:0000072!1.63e-13!46;UBERON:0001007!2.03e-12!155;UBERON:0001555!2.03e-12!155;UBERON:0007026!2.03e-12!155;UBERON:0001041!4.08e-12!98;UBERON:0000166!2.21e-11!21;UBERON:0000077!6.98e-11!130;UBERON:0005631!8.19e-11!14;UBERON:0000158!8.19e-11!14;UBERON:0008947!1.93e-10!38;UBERON:0003258!1.93e-10!38;UBERON:0004921!7.29e-10!129;UBERON:0004185!7.29e-10!129;UBERON:0000165!3.72e-09!28;UBERON:0000930!3.72e-09!28;UBERON:0000064!3.39e-08!219;UBERON:0000161!8.46e-08!35;UBERON:0000305!1.12e-07!7;UBERON:0001949!4.47e-07!3|ontology_enrichment_uberon_v019=UBERON:0001737;1.68e-45;9!UBERON:0001557;1.68e-45;9!UBERON:0002394;2.93e-12;4!UBERON:0003928;2.93e-12;4!UBERON:0002294;6.84e-12;7!UBERON:0001173;6.84e-12;7!UBERON:0000072;1.63e-11;37!UBERON:0000065;3.20e-09;44|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.20e-45,9;UBERON:0001557,3.05e-31,19;UBERON:0000072,1.08e-13,47;UBERON:0001041,1.66e-13,87;UBERON:0008947,5.00e-12,38;UBERON:0003258,5.00e-12,38;UBERON:0000065,1.33e-11,54;UBERON:0002294,2.63e-09,9;UBERON:0001173,2.63e-09,9;UBERON:0004912,2.63e-09,9;UBERON:0001004,2.96e-09,74;UBERON:0004921,6.77e-09,118;UBERON:0001007,1.37e-08,145;UBERON:0001555,1.37e-08,145;UBERON:0007026,1.37e-08,145;UBERON:0004119,1.85e-08,160;UBERON:0000925,1.85e-08,160;UBERON:0006595,1.85e-08,160;UBERON:0002394,2.47e-08,6;UBERON:0003928,2.47e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.36373060295417,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,5.20549920175313,4.55178663210875,2.89213235860178,4.08087699109858,5.01122721412534,1.66089433377768,4.04493924480493,3.92442930250692,4.23221872641029,0,0,0,0,0,0,0,0,0.245976877086227,0,0.658501712451753,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.335964256397719,0.425325291727159,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7313580007429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,3.67560323971548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,33.321571898966,0,26.0231488364082,0.890894042497916,27.6444631889309,0,0,0,0,0,0,0,0,0,0.123084805461069,0,2.06697207638852,3.75944466818779,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.975966209950223,0.230850775511391,0,0,0,0,3.19001159731919,0.0915975934018623,0,0,0,2.16075186470203,0,0,0,0,0.635746315921515,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44980993535944,0.174118413160805,0,0,7.93401916570498,6.5780385377567,7.1440447636292,1.06687918137261,0,0,0,0,0,1.36885967914362,0,0,2.79733453414982,0,0,0,0,0,0,0.271808412147228,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31348033198942,0,0,0,0,0,0,0,28.1926008926669,0.106787412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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-56bp_to_ENST00000531555_5end | |||
|description=CAGE_peak_6_at_TRIM29_5end | |||
|id=chr11:119993797..119993810,- | |||
|ontology_enrichment_celltype=CL:0000066!4.49e-17!254;CL:0002076!6.72e-11!43;CL:0002251!8.83e-11!21;CL:0002159!7.39e-09!13;CL:0002150!5.45e-08!3;CL:0000861!5.45e-08!3;CL:0002621!4.47e-07!3;CL:0000223!9.82e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000575;8.72e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,8.29e-11,2;CL:0000066,4.12e-10,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.73e-16;29 | |||
|ontology_enrichment_disease=DOID:305!9.72e-12!106 | |||
|ontology_enrichment_disease_v019=DOID:3111;6.96e-07;1!DOID:3603;6.96e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.19e-19,106;DOID:0050687,9.00e-13,143;DOID:162,2.58e-09,235;DOID:14566,5.25e-09,239;DOID:3111,6.96e-07,1;DOID:3603,6.96e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!6.64e-22!72;UBERON:0001557!3.28e-20!19;UBERON:0001737!9.11e-20!9;UBERON:0000065!3.55e-16!53;UBERON:0004119!2.60e-15!169;UBERON:0000925!2.60e-15!169;UBERON:0006595!2.60e-15!169;UBERON:0000072!1.63e-13!46;UBERON:0001007!2.03e-12!155;UBERON:0001555!2.03e-12!155;UBERON:0007026!2.03e-12!155;UBERON:0001041!4.08e-12!98;UBERON:0000166!2.21e-11!21;UBERON:0000077!6.98e-11!130;UBERON:0005631!8.19e-11!14;UBERON:0000158!8.19e-11!14;UBERON:0008947!1.93e-10!38;UBERON:0003258!1.93e-10!38;UBERON:0004921!7.29e-10!129;UBERON:0004185!7.29e-10!129;UBERON:0000165!3.72e-09!28;UBERON:0000930!3.72e-09!28;UBERON:0000064!3.39e-08!219;UBERON:0000161!8.46e-08!35;UBERON:0000305!1.12e-07!7;UBERON:0001949!4.47e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.68e-45;9!UBERON:0001557;1.68e-45;9!UBERON:0002394;2.93e-12;4!UBERON:0003928;2.93e-12;4!UBERON:0002294;6.84e-12;7!UBERON:0001173;6.84e-12;7!UBERON:0000072;1.63e-11;37!UBERON:0000065;3.20e-09;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.20e-45,9;UBERON:0001557,3.05e-31,19;UBERON:0000072,1.08e-13,47;UBERON:0001041,1.66e-13,87;UBERON:0008947,5.00e-12,38;UBERON:0003258,5.00e-12,38;UBERON:0000065,1.33e-11,54;UBERON:0002294,2.63e-09,9;UBERON:0001173,2.63e-09,9;UBERON:0004912,2.63e-09,9;UBERON:0001004,2.96e-09,74;UBERON:0004921,6.77e-09,118;UBERON:0001007,1.37e-08,145;UBERON:0001555,1.37e-08,145;UBERON:0007026,1.37e-08,145;UBERON:0004119,1.85e-08,160;UBERON:0000925,1.85e-08,160;UBERON:0006595,1.85e-08,160;UBERON:0002394,2.47e-08,6;UBERON:0003928,2.47e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,1.36373060295417,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,5.20549920175313,4.55178663210875,2.89213235860178,4.08087699109858,5.01122721412534,1.66089433377768,4.04493924480493,3.92442930250692,4.23221872641029,0,0,0,0,0,0,0,0,0.245976877086227,0,0.658501712451753,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.335964256397719,0.425325291727159,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7313580007429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,3.67560323971548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,33.321571898966,0,26.0231488364082,0.890894042497916,27.6444631889309,0,0,0,0,0,0,0,0,0,0.123084805461069,0,2.06697207638852,3.75944466818779,0,0,0,0,0,0,0,0,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.975966209950223,0.230850775511391,0,0,0,0,3.19001159731919,0.0915975934018623,0,0,0,2.16075186470203,0,0,0,0,0.635746315921515,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44980993535944,0.174118413160805,0,0,7.93401916570498,6.5780385377567,7.1440447636292,1.06687918137261,0,0,0,0,0,1.36885967914362,0,0,2.79733453414982,0,0,0,0,0,0,0.271808412147228,0.523014231561666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31348033198942,0,0,0,0,0,0,0,28.1926008926669,0.106787412567695,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0.428883182749851,0,0,0,0,0,5.5584260488975,0.877136198314828,0,0,0,0,0,0,0,0,0,0,0,0,21.7651487059386,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.366857197043358,0,0,0,0,0,0,0,0,0,4.28782650029431,0,0,0,0,0,0.548257766857182,0,0,0.255524855279191,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.3414369541879,0.691259661814092,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399764623699716,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0.581300188524055,0.558672428662721,0.112131862580613,0,0,4.13661821004227,0.684466602170562,4.10847523388984,0.717222053926764,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p6@TRIM29 | |||
}} |
Revision as of 16:11, 10 September 2013
Short description: | p6@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_TRIM29_5end |
Coexpression cluster: | NA |
Association with transcript: | -56bp_to_ENST00000531555_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 8.29e-11 | 2 |
epithelial cell | 4.12e-10 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.20e-45 | 9 |
upper respiratory tract | 3.05e-31 | 19 |
segment of respiratory tract | 1.08e-13 | 47 |
foregut | 1.66e-13 | 87 |
respiratory primordium | 5.00e-12 | 38 |
endoderm of foregut | 5.00e-12 | 38 |
respiratory tract | 1.33e-11 | 54 |
biliary system | 2.63e-09 | 9 |
biliary tree | 2.63e-09 | 9 |
biliary bud | 2.63e-09 | 9 |
respiratory system | 2.96e-09 | 74 |
subdivision of digestive tract | 6.77e-09 | 118 |
digestive system | 1.37e-08 | 145 |
digestive tract | 1.37e-08 | 145 |
primitive gut | 1.37e-08 | 145 |
endoderm-derived structure | 1.85e-08 | 160 |
endoderm | 1.85e-08 | 160 |
presumptive endoderm | 1.85e-08 | 160 |
bile duct | 2.47e-08 | 6 |
digestive system duct | 2.47e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.19e-19 | 106 |
cell type cancer | 9.00e-13 | 143 |
cancer | 2.58e-09 | 235 |
disease of cellular proliferation | 5.25e-09 | 239 |
cystadenocarcinoma | 6.96e-07 | 1 |
mucinous cystadenocarcinoma | 6.96e-07 | 1 |
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