FFCP PHASE1:Hg19::chr16:811064..811071,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10232|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7371|TSSclassifier=S|UniProt=Q13421|association_with_transcript=-1bp_to_NM_013404_5end|coexpression_cluster_id=C68|description=CAGE_peak_6_at_MSLN_5end|id=chr16:811064..811071,+|ontology_enrichment_celltype=CL:0000066!1.77e-19!254;CL:0000077!1.77e-13!19;CL:0000076!2.15e-08!62|ontology_enrichment_celltype_v019=CL:0000077;4.37e-17;19!CL:0000349;6.06e-14;19!CL:0002577;6.53e-12;3!CL:0002097;2.21e-08;2!CL:0002536;9.40e-08;2!CL:0002537;3.51e-07;5|ontology_enrichment_celltype_v019_2=CL:0000066,1.80e-19,253;CL:0000077,4.09e-17,19;CL:0000349,6.38e-14,19;CL:0002577,7.85e-12,3;CL:0000076,2.79e-10,63;CL:0002097,2.06e-08,2;CL:0002536,7.14e-08,2;CL:0002537,3.98e-07,5|ontology_enrichment_development_v019=UBERON:0008947;5.70e-20;29|ontology_enrichment_disease=DOID:305!9.54e-14!106;DOID:0050687!2.02e-08!143;DOID:299!2.74e-07!25|ontology_enrichment_disease_v019=DOID:3493;2.75e-08;2!DOID:4929;9.40e-08;2!DOID:299;1.51e-07;25|ontology_enrichment_disease_v019_2=DOID:305,9.85e-17,106;DOID:0050687,7.36e-13,143;DOID:162,2.56e-10,235;DOID:14566,6.25e-10,239;DOID:3493,3.54e-08,2;DOID:4929,5.03e-08,2;DOID:299,1.42e-07,25|ontology_enrichment_uberon=UBERON:0001737!1.83e-13!9;UBERON:0008947!1.85e-12!38;UBERON:0003258!1.85e-12!38;UBERON:0005631!2.23e-12!14;UBERON:0000158!2.23e-12!14;UBERON:0000064!9.49e-11!219;UBERON:0000464!5.05e-10!104;UBERON:0000077!6.69e-10!130;UBERON:0000062!7.23e-10!511;UBERON:0004119!2.14e-09!169;UBERON:0000925!2.14e-09!169;UBERON:0006595!2.14e-09!169;UBERON:0001041!3.07e-09!98;UBERON:0000466!5.59e-09!126;UBERON:0000058!1.09e-08!26;UBERON:0003124!4.30e-08!7;UBERON:0001007!4.71e-08!155;UBERON:0001555!4.71e-08!155;UBERON:0007026!4.71e-08!155;UBERON:0000065!5.04e-08!53;UBERON:0003887!5.29e-08!21;UBERON:0005177!8.03e-08!107;UBERON:0004921!1.30e-07!129;UBERON:0004185!1.30e-07!129;UBERON:0003886!2.20e-07!63;UBERON:0000080!3.34e-07!18;UBERON:0002120!3.34e-07!18;UBERON:0004875!3.34e-07!18;UBERON:0005721!3.34e-07!18;UBERON:0005754!3.34e-07!18;UBERON:0007297!3.34e-07!18;UBERON:0001987!4.47e-07!4;UBERON:0004340!4.47e-07!4;UBERON:0001004!4.69e-07!72;UBERON:0004175!6.76e-07!25;UBERON:0000072!7.46e-07!46|ontology_enrichment_uberon_v019=UBERON:0001737;6.86e-23;9!UBERON:0001557;6.86e-23;9!UBERON:0000305;1.35e-12;7!UBERON:0005631;1.78e-12;10!UBERON:0000158;1.78e-12;10!UBERON:0000065;2.01e-11;44!UBERON:0000478;1.14e-10;24!UBERON:0000072;5.04e-10;37!UBERON:0001987;4.99e-09;4!UBERON:0001004;1.07e-07;65|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.95e-23,9;UBERON:0005631,1.56e-19,14;UBERON:0000158,1.56e-19,14;UBERON:0008947,8.53e-17,38;UBERON:0003258,8.53e-17,38;UBERON:0000305,1.29e-12,7;UBERON:0004871,5.38e-11,8;UBERON:0000065,8.80e-11,54;UBERON:0000478,1.18e-10,24;UBERON:0001557,3.59e-10,19;UBERON:0001004,2.96e-09,74;UBERON:0001987,5.71e-09,4;UBERON:0004340,5.71e-09,4;UBERON:0003124,9.16e-09,7;UBERON:0001041,2.21e-08,87;UBERON:0000072,8.24e-08,47|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.18441372130172,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0.728590576585084,1.48313777113772,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,2.12952240071719,1.34867752062481,2.16909926895134,1.54411561825352,2.17879444092406,1.42362371466658,1.48314438976181,0.98110732562673,2.30848294167834,0,0,0.8231480226628,0,0,0,0,0,0.368965315629341,0,0,1.1240175325762,0.201057944823262,0.555530670951178,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,2.12189300012382,11.6504807657348,6.95497674658265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0.462092022626489,1.56869953835371,1.46139224653261,0,0,0,0.215915916102139,0,0.541892875087706,1.00337954770971,0.509752546090077,1.66215201785745,0,0,0,0,0,0,0.9273691048295,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0.670302275535787,2.17781969722645,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.81353980304522,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0,0,0,0,39.3928399817189,1.18785872333055,31.9447130183201,0,0.140669416410513,0,0,0,0.597743964753209,0,0,0,0,0,0.269605053441981,0.89510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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10232 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7371 | |||
|TSSclassifier=S | |||
|UniProt=Q13421 | |||
|association_with_transcript=-1bp_to_NM_013404_5end | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_6_at_MSLN_5end | |||
|id=chr16:811064..811071,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.77e-19!254;CL:0000077!1.77e-13!19;CL:0000076!2.15e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0000077;4.37e-17;19!CL:0000349;6.06e-14;19!CL:0002577;6.53e-12;3!CL:0002097;2.21e-08;2!CL:0002536;9.40e-08;2!CL:0002537;3.51e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.80e-19,253;CL:0000077,4.09e-17,19;CL:0000349,6.38e-14,19;CL:0002577,7.85e-12,3;CL:0000076,2.79e-10,63;CL:0002097,2.06e-08,2;CL:0002536,7.14e-08,2;CL:0002537,3.98e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.70e-20;29 | |||
|ontology_enrichment_disease=DOID:305!9.54e-14!106;DOID:0050687!2.02e-08!143;DOID:299!2.74e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:3493;2.75e-08;2!DOID:4929;9.40e-08;2!DOID:299;1.51e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.85e-17,106;DOID:0050687,7.36e-13,143;DOID:162,2.56e-10,235;DOID:14566,6.25e-10,239;DOID:3493,3.54e-08,2;DOID:4929,5.03e-08,2;DOID:299,1.42e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.83e-13!9;UBERON:0008947!1.85e-12!38;UBERON:0003258!1.85e-12!38;UBERON:0005631!2.23e-12!14;UBERON:0000158!2.23e-12!14;UBERON:0000064!9.49e-11!219;UBERON:0000464!5.05e-10!104;UBERON:0000077!6.69e-10!130;UBERON:0000062!7.23e-10!511;UBERON:0004119!2.14e-09!169;UBERON:0000925!2.14e-09!169;UBERON:0006595!2.14e-09!169;UBERON:0001041!3.07e-09!98;UBERON:0000466!5.59e-09!126;UBERON:0000058!1.09e-08!26;UBERON:0003124!4.30e-08!7;UBERON:0001007!4.71e-08!155;UBERON:0001555!4.71e-08!155;UBERON:0007026!4.71e-08!155;UBERON:0000065!5.04e-08!53;UBERON:0003887!5.29e-08!21;UBERON:0005177!8.03e-08!107;UBERON:0004921!1.30e-07!129;UBERON:0004185!1.30e-07!129;UBERON:0003886!2.20e-07!63;UBERON:0000080!3.34e-07!18;UBERON:0002120!3.34e-07!18;UBERON:0004875!3.34e-07!18;UBERON:0005721!3.34e-07!18;UBERON:0005754!3.34e-07!18;UBERON:0007297!3.34e-07!18;UBERON:0001987!4.47e-07!4;UBERON:0004340!4.47e-07!4;UBERON:0001004!4.69e-07!72;UBERON:0004175!6.76e-07!25;UBERON:0000072!7.46e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.86e-23;9!UBERON:0001557;6.86e-23;9!UBERON:0000305;1.35e-12;7!UBERON:0005631;1.78e-12;10!UBERON:0000158;1.78e-12;10!UBERON:0000065;2.01e-11;44!UBERON:0000478;1.14e-10;24!UBERON:0000072;5.04e-10;37!UBERON:0001987;4.99e-09;4!UBERON:0001004;1.07e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.95e-23,9;UBERON:0005631,1.56e-19,14;UBERON:0000158,1.56e-19,14;UBERON:0008947,8.53e-17,38;UBERON:0003258,8.53e-17,38;UBERON:0000305,1.29e-12,7;UBERON:0004871,5.38e-11,8;UBERON:0000065,8.80e-11,54;UBERON:0000478,1.18e-10,24;UBERON:0001557,3.59e-10,19;UBERON:0001004,2.96e-09,74;UBERON:0001987,5.71e-09,4;UBERON:0004340,5.71e-09,4;UBERON:0003124,9.16e-09,7;UBERON:0001041,2.21e-08,87;UBERON:0000072,8.24e-08,47 | |||
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|short_description=p6@MSLN | |||
}} |
Revision as of 11:42, 11 September 2013
Short description: | p6@MSLN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_MSLN_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -1bp_to_NM_013404_5end |
EntrezGene: | MSLN |
HGNC: | 7371 |
UniProt: | Q13421 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.80e-19 | 253 |
mesothelial cell | 4.09e-17 | 19 |
extraembryonic cell | 6.38e-14 | 19 |
placental epithelial cell | 7.85e-12 | 3 |
squamous epithelial cell | 2.79e-10 | 63 |
cortical cell of adrenal gland | 2.06e-08 | 2 |
amniotic epithelial cell | 7.14e-08 | 2 |
amnion mesenchymal stem cell | 3.98e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.95e-23 | 9 |
extraembryonic membrane | 1.56e-19 | 14 |
membranous layer | 1.56e-19 | 14 |
respiratory primordium | 8.53e-17 | 38 |
endoderm of foregut | 8.53e-17 | 38 |
amnion | 1.29e-12 | 7 |
somatic layer of lateral plate mesoderm | 5.38e-11 | 8 |
respiratory tract | 8.80e-11 | 54 |
extraembryonic structure | 1.18e-10 | 24 |
upper respiratory tract | 3.59e-10 | 19 |
respiratory system | 2.96e-09 | 74 |
placenta | 5.71e-09 | 4 |
allantois | 5.71e-09 | 4 |
chorion | 9.16e-09 | 7 |
foregut | 2.21e-08 | 87 |
segment of respiratory tract | 8.24e-08 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.85e-17 | 106 |
cell type cancer | 7.36e-13 | 143 |
cancer | 2.56e-10 | 235 |
disease of cellular proliferation | 6.25e-10 | 239 |
signet ring cell adenocarcinoma | 3.54e-08 | 2 |
tubular adenocarcinoma | 5.03e-08 | 2 |
adenocarcinoma | 1.42e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.