FFCP PHASE1:Hg19::chr20:31396006..31396015,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C49|description=CAGE_peak_at_chr20:31396006..31396015,+|id=chr20:31396006..31396015,+|ontology_enrichment_celltype=CL:0000039!3.30e-11!7;CL:0000586!3.30e-11!7;CL:0002322!9.96e-09!5|ontology_enrichment_celltype_v019=CL:0002322;2.40e-42;5!CL:0000039;3.62e-42;7!CL:0000586;3.62e-42;7!CL:0002321;4.48e-14;15!CL:0000540;1.15e-13;6!CL:0000404;1.15e-13;6!CL:0000148;3.14e-08;10|ontology_enrichment_celltype_v019_2=CL:0002322,2.31e-42,5;CL:0000039,3.38e-42,7;CL:0000586,3.38e-42,7;CL:0000540,1.13e-13,6;CL:0000031,1.13e-13,6;CL:0000404,1.13e-13,6;CL:0000047,2.20e-10,8;CL:0000148,3.14e-08,10;CL:0000541,3.14e-08,10|ontology_enrichment_development_v019=UBERON:0009117;1.16e-20;10!UBERON:0005564;1.16e-20;10!CL:0000031;1.15e-13;6|ontology_enrichment_disease=DOID:162!4.92e-19!235;DOID:14566!9.93e-19!239;DOID:0050687!1.05e-13!143;DOID:305!3.42e-10!106;DOID:3095!4.63e-10!22;DOID:2994!4.63e-10!22;DOID:0050686!4.78e-10!137;DOID:1240!2.54e-08!39;DOID:2531!4.72e-08!51;DOID:0060083!4.72e-08!51;DOID:8692!5.56e-07!31|ontology_enrichment_disease_v019=DOID:3095;5.32e-29;22!DOID:2994;5.32e-29;22!DOID:1799;2.46e-09;1!DOID:10165;2.46e-09;1!DOID:1798;2.46e-09;1|ontology_enrichment_disease_v019_2=DOID:3095,4.98e-29,22;DOID:2994,4.98e-29,22;DOID:1799,2.26e-09,1;DOID:10165,2.26e-09,1;DOID:1798,2.26e-09,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000473;5.96e-17;8!UBERON:0003135;2.18e-12;11!UBERON:0000991;8.91e-10;21!UBERON:0000922;3.35e-08;49|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.49e-17,8;UBERON:0003135,2.05e-12,11;UBERON:0000991,8.66e-10,21;UBERON:0009196,8.66e-10,21;UBERON:0009117,8.66e-10,21;UBERON:0005564,8.66e-10,21;UBERON:0004176,2.46e-09,22|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.572471974262113,0.273748850145768,0,0,0,0,0.393364276848904,0,0,0,0,0,0.154934401160603,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,0.0654895377488563,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0.18611685633159,0,0,0,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,8.53815942907168,7.81925633096763,12.781333715647,3.31715376049185,11.3544382894033,17.8838905947157,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0.224170287987055,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.362578348774867,0,0,0.114814448164607,0,0,0.451199612907412,0.231046011313244,0.784349769176855,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.245040215981032,0,0.28853842595289,0,0.159426272728822,0.798317485731266,0.191505370132367,2.11673582723883,0.324621940274555,0,0.456469358066384,0,5.01268954180134,1.01575066680962,0,0.201799707191048,0,0,0,0,0,0,0,0,2.70455678475983,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,0,0,0.344743373241465,0,0,0,0,0,0,0.295547618953547,0,0,0.139423744278603,0,0,0.69169171316418,3.05175990993225,2.60753692612819,0,0,0,2.04386596391473,0.31396051279005,0,0.676786981851542,0.19606253431774,0.671286347903371,0.948768663620925,0,0.421996129056054,0.489698424477443,0.565412285735763,0.216388639742091,0,0,0,0,0.123563938946503,0.104421949505455,0,0,0,0.182454789215666,0,0.242780379534093,0.394584402849391,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0,0.293977192243133,0,0,0.171986032471617,0.19351266257817,0.0730893170861856,0,0,0,0.225980740780532,0.137041924646751,0.19871461170299,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.337017719270924,0,0,0,0,22.6661939335677,16.2296535184736,12.8786504789047,0,0,0,0,0,0,0.1056003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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr20:31396006..31396015,+ | |||
|id=chr20:31396006..31396015,+ | |||
|ontology_enrichment_celltype=CL:0000039!3.30e-11!7;CL:0000586!3.30e-11!7;CL:0002322!9.96e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.40e-42;5!CL:0000039;3.62e-42;7!CL:0000586;3.62e-42;7!CL:0002321;4.48e-14;15!CL:0000540;1.15e-13;6!CL:0000404;1.15e-13;6!CL:0000148;3.14e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.31e-42,5;CL:0000039,3.38e-42,7;CL:0000586,3.38e-42,7;CL:0000540,1.13e-13,6;CL:0000031,1.13e-13,6;CL:0000404,1.13e-13,6;CL:0000047,2.20e-10,8;CL:0000148,3.14e-08,10;CL:0000541,3.14e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.16e-20;10!UBERON:0005564;1.16e-20;10!CL:0000031;1.15e-13;6 | |||
|ontology_enrichment_disease=DOID:162!4.92e-19!235;DOID:14566!9.93e-19!239;DOID:0050687!1.05e-13!143;DOID:305!3.42e-10!106;DOID:3095!4.63e-10!22;DOID:2994!4.63e-10!22;DOID:0050686!4.78e-10!137;DOID:1240!2.54e-08!39;DOID:2531!4.72e-08!51;DOID:0060083!4.72e-08!51;DOID:8692!5.56e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.32e-29;22!DOID:2994;5.32e-29;22!DOID:1799;2.46e-09;1!DOID:10165;2.46e-09;1!DOID:1798;2.46e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.98e-29,22;DOID:2994,4.98e-29,22;DOID:1799,2.26e-09,1;DOID:10165,2.26e-09,1;DOID:1798,2.26e-09,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.96e-17;8!UBERON:0003135;2.18e-12;11!UBERON:0000991;8.91e-10;21!UBERON:0000922;3.35e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.49e-17,8;UBERON:0003135,2.05e-12,11;UBERON:0000991,8.66e-10,21;UBERON:0009196,8.66e-10,21;UBERON:0009117,8.66e-10,21;UBERON:0005564,8.66e-10,21;UBERON:0004176,2.46e-09,22 | |||
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|short_description=p@chr20:31396006..31396015,+ | |||
}} |
Revision as of 08:02, 12 September 2013
Short description: | p@chr20:31396006..31396015, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:31396006..31396015, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.31e-42 | 5 |
germ line cell | 3.38e-42 | 7 |
germ cell | 3.38e-42 | 7 |
neuron | 1.13e-13 | 6 |
neuroblast | 1.13e-13 | 6 |
electrically signaling cell | 1.13e-13 | 6 |
neuronal stem cell | 2.20e-10 | 8 |
melanocyte | 3.14e-08 | 10 |
melanoblast | 3.14e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 5.49e-17 | 8 |
male reproductive organ | 2.05e-12 | 11 |
gonad | 8.66e-10 | 21 |
indifferent external genitalia | 8.66e-10 | 21 |
indifferent gonad | 8.66e-10 | 21 |
gonad primordium | 8.66e-10 | 21 |
external genitalia | 2.46e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.98e-29 | 22 |
germ cell cancer | 4.98e-29 | 22 |
islet cell tumor | 2.26e-09 | 1 |
endocrine pancreas cancer | 2.26e-09 | 1 |
pancreatic endocrine carcinoma | 2.26e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.