FFCP PHASE1:Hg19::chr2:64977835..64977861,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9792|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30784|TSSclassifier=W|UniProt=|association_with_transcript=-386bp_to_ENST00000476805_5end|description=CAGE_peak_3_at_SERTAD2_5end|id=chr2:64977835..64977861,-|ontology_enrichment_celltype=CL:0000557!2.84e-10!71;CL:0002009!4.39e-09!65;CL:0002194!1.96e-08!63;CL:0000576!1.96e-08!63;CL:0000040!1.96e-08!63;CL:0000559!1.96e-08!63;CL:0000839!2.24e-08!70;CL:0000766!1.81e-07!76|ontology_enrichment_celltype_v019=CL:0000473;1.69e-07;39!CL:0000234;1.69e-07;39!CL:0000860;7.12e-07;33!CL:0002057;7.12e-07;33|ontology_enrichment_celltype_v019_2=CL:0000557,3.37e-09,67;CL:0002009,2.02e-08,61;CL:0002194,5.03e-08,59;CL:0000576,5.03e-08,59;CL:0000040,5.03e-08,59;CL:0000559,5.03e-08,59;CL:0000839,7.65e-08,66|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001474!2.46e-11!86;UBERON:0004765!7.16e-11!101;UBERON:0001434!7.16e-11!101;UBERON:0000467!7.51e-11!625;UBERON:0002193!1.11e-10!112;UBERON:0002371!1.23e-10!80;UBERON:0000480!1.25e-10!626;UBERON:0002390!3.98e-10!102;UBERON:0003061!3.98e-10!102;UBERON:0000468!1.47e-09!659;UBERON:0000062!7.83e-09!511;UBERON:0007023!1.09e-07!115|ontology_enrichment_uberon_v019=UBERON:0002619;3.95e-07;22!UBERON:0001950;6.05e-07;20|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.07e-08,76;UBERON:0001474,5.52e-08,82;UBERON:0002780,1.50e-07,41;UBERON:0001890,1.50e-07,41;UBERON:0003080,1.50e-07,41;UBERON:0006240,1.50e-07,41;UBERON:0002619,1.89e-07,22;UBERON:0001950,2.06e-07,20;UBERON:0002405,3.32e-07,93;UBERON:0004765,3.89e-07,90;UBERON:0001869,7.64e-07,32|phase1_expression=1.09007027562334,0.642301571672949,0.845726424575827,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.491467873003018,0,0.436882744260345,0.791300934685361,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0.246242116153576,0.408001382488506,0,0.286235987131057,0,0,0.61130724598361,0.164201178899891,0.393553906568396,0.393364276848904,0,0.154816123316076,0.919421224478927,1.50602959389125,1.10926203050036,0.309868802321207,0.426507697462265,0.293600439334847,0.553995408531877,0.200544447470142,0.217010870715852,1.79132379391939,3.2389366601898,3.09090681161024,2.32637182047304,1.88937971844405,2.66842467306598,2.78914844286822,0.822335776043652,1.23882548358041,0.575384784644301,1.2808035326455,0.709446689665756,1.03423704220986,1.29096936716765,0,1.31769637679823,1.36453075028923,2.24723484445085,0.612167784741805,1.92557416245656,0,0.989553900560148,0.797854630486527,0.852449501065388,1.16083695451434,1.13477044938228,0.622822248995575,1.50749199154046,0.521482918420201,1.73751075764093,0.605399502633369,1.10483290796269,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0.786300418025466,0.300353785683013,1.12507910687956,0.855038231223746,0,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0.384273959177026,0,0.657751618414705,0,0,0.14828656316206,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0,0.289693037921647,2.3858578411533,0,0.567208902984407,0.886917589850256,0.263504357079378,0.916853528483988,1.82147644146271,2.22470665670658,2.27183175558278,5.74628133087582,1.86141144726411,0.715471872916026,0.571994910780128,0.371457501329565,0.596287222100115,0,0,1.13061588384802,0,0,0,1.29208379584664,1.77883131343355,0.33472061276467,0.805658634218294,0,0,0,0.81014194788176,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,0,1.3082821564276,0.993943903390637,0.379891534993739,1.85372853138506,1.14734648299525,2.12801029319014,0.560677600142307,0,0.49333509683432,0.622422070799533,0.134710672069688,0.490385709340376,0.302714855289863,0,0.234321431833797,0.312160076830321,0.570471821544449,0.896692083310806,0.23486899728753,0.161872944368132,0.421352420106746,0.408308342509787,0,0,0,0.494533858557114,0.910161361938026,0.718618141816238,0,0,0.277064115484183,0.438977620880838,0,0.45071417671979,0.226864366320042,1.25572744982203,0.640672166455702,1.27159140695737,1.50045548042201,1.75189299705346,1.28820270022815,0.744467425326359,1.35021065793013,1.65642908774038,0.252433774244115,0.644349290496095,0.161646056818812,1.42003837006646,1.91428986632517,0.67824236924195,1.15956511897978,0.818238361772504,1.43402297694502,0,0.132529768321485,0,0,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0.168584690078102,0,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.53650399572076,0,0.402115889646523,1.48141512253647,0.325808305310325,1.03993478527958,0,0.115930404975077,0.587043471179108,0.866198686566443,0,0.380508304469197,0,0,1.23108503043699,10.7641961964049,3.12125440806329,0.93733833986777,0.16798212819886,1.55952606966625,1.34337784054272,0.290633938513962,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9792 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30784 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-386bp_to_ENST00000476805_5end | |||
|description=CAGE_peak_3_at_SERTAD2_5end | |||
|id=chr2:64977835..64977861,- | |||
|ontology_enrichment_celltype=CL:0000557!2.84e-10!71;CL:0002009!4.39e-09!65;CL:0002194!1.96e-08!63;CL:0000576!1.96e-08!63;CL:0000040!1.96e-08!63;CL:0000559!1.96e-08!63;CL:0000839!2.24e-08!70;CL:0000766!1.81e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.69e-07;39!CL:0000234;1.69e-07;39!CL:0000860;7.12e-07;33!CL:0002057;7.12e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.37e-09,67;CL:0002009,2.02e-08,61;CL:0002194,5.03e-08,59;CL:0000576,5.03e-08,59;CL:0000040,5.03e-08,59;CL:0000559,5.03e-08,59;CL:0000839,7.65e-08,66 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!2.46e-11!86;UBERON:0004765!7.16e-11!101;UBERON:0001434!7.16e-11!101;UBERON:0000467!7.51e-11!625;UBERON:0002193!1.11e-10!112;UBERON:0002371!1.23e-10!80;UBERON:0000480!1.25e-10!626;UBERON:0002390!3.98e-10!102;UBERON:0003061!3.98e-10!102;UBERON:0000468!1.47e-09!659;UBERON:0000062!7.83e-09!511;UBERON:0007023!1.09e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.95e-07;22!UBERON:0001950;6.05e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.07e-08,76;UBERON:0001474,5.52e-08,82;UBERON:0002780,1.50e-07,41;UBERON:0001890,1.50e-07,41;UBERON:0003080,1.50e-07,41;UBERON:0006240,1.50e-07,41;UBERON:0002619,1.89e-07,22;UBERON:0001950,2.06e-07,20;UBERON:0002405,3.32e-07,93;UBERON:0004765,3.89e-07,90;UBERON:0001869,7.64e-07,32 | |||
|phase1_expression=1.09007027562334,0.642301571672949,0.845726424575827,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.491467873003018,0,0.436882744260345,0.791300934685361,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0.246242116153576,0.408001382488506,0,0.286235987131057,0,0,0.61130724598361,0.164201178899891,0.393553906568396,0.393364276848904,0,0.154816123316076,0.919421224478927,1.50602959389125,1.10926203050036,0.309868802321207,0.426507697462265,0.293600439334847,0.553995408531877,0.200544447470142,0.217010870715852,1.79132379391939,3.2389366601898,3.09090681161024,2.32637182047304,1.88937971844405,2.66842467306598,2.78914844286822,0.822335776043652,1.23882548358041,0.575384784644301,1.2808035326455,0.709446689665756,1.03423704220986,1.29096936716765,0,1.31769637679823,1.36453075028923,2.24723484445085,0.612167784741805,1.92557416245656,0,0.989553900560148,0.797854630486527,0.852449501065388,1.16083695451434,1.13477044938228,0.622822248995575,1.50749199154046,0.521482918420201,1.73751075764093,0.605399502633369,1.10483290796269,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0.786300418025466,0.300353785683013,1.12507910687956,0.855038231223746,0,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0.384273959177026,0,0.657751618414705,0,0,0.14828656316206,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0,0.289693037921647,2.3858578411533,0,0.567208902984407,0.886917589850256,0.263504357079378,0.916853528483988,1.82147644146271,2.22470665670658,2.27183175558278,5.74628133087582,1.86141144726411,0.715471872916026,0.571994910780128,0.371457501329565,0.596287222100115,0,0,1.13061588384802,0,0,0,1.29208379584664,1.77883131343355,0.33472061276467,0.805658634218294,0,0,0,0.81014194788176,0.357198913136319,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,0,1.3082821564276,0.993943903390637,0.379891534993739,1.85372853138506,1.14734648299525,2.12801029319014,0.560677600142307,0,0.49333509683432,0.622422070799533,0.134710672069688,0.490385709340376,0.302714855289863,0,0.234321431833797,0.312160076830321,0.570471821544449,0.896692083310806,0.23486899728753,0.161872944368132,0.421352420106746,0.408308342509787,0,0,0,0.494533858557114,0.910161361938026,0.718618141816238,0,0,0.277064115484183,0.438977620880838,0,0.45071417671979,0.226864366320042,1.25572744982203,0.640672166455702,1.27159140695737,1.50045548042201,1.75189299705346,1.28820270022815,0.744467425326359,1.35021065793013,1.65642908774038,0.252433774244115,0.644349290496095,0.161646056818812,1.42003837006646,1.91428986632517,0.67824236924195,1.15956511897978,0.818238361772504,1.43402297694502,0,0.132529768321485,0,0,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0.168584690078102,0,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,1.53650399572076,0,0.402115889646523,1.48141512253647,0.325808305310325,1.03993478527958,0,0.115930404975077,0.587043471179108,0.866198686566443,0,0.380508304469197,0,0,1.23108503043699,10.7641961964049,3.12125440806329,0.93733833986777,0.16798212819886,1.55952606966625,1.34337784054272,0.290633938513962,0.383382679165211,1.97065295158377,0.264145302039678,0.829312462163088,1.15295962733569,0.6312121671319,0,0.763976851116555,0,1.71072446022705,0.102827492703324,0,0,0,0,0.07333828582095,0.775630294546667,3.57656445851882,0,0.26593811658487,1.04007436911366,0.771622122786426,0,0.799266537048298,0,0.542621605391443,0,0.325736184293735,0,0,0,0,0.399891964728228,0,0.502257091432126,0,0,0,1.42636905040718,1.30303176000821,1.02738161275192,1.43248770591916,0,0,0.215627574859517,0,0.76228387266739,0,0,0,0,0.749007023947182,0,0.414415513436035,0.36807447515742,0.500170521059677,0,0.207970861530807,0.535286966391485,0.788512075169673,0.234282829985426,1.50473049863859,0,0,0,0.368738337083406,0.434418072340414,0.391602314925481,0,0.206768026122887,0.862856803274467,0.533637789017222,0,0,0,0.744323423456331,1.2276957863045,1.12264037773229,1.40953064181271,1.02341449813341,0.321707842287215,0,0.308419387605311,0.710246901252508,1.72467027628999,1.03850885836724,2.09178681227927,0,0.601519410909855,0.184161977871793,0.114814448164607,0.546273504020151,0.655622074797121,0.451199612907412,0,0,0,0,0,0.340187410553031,0.431831832204279,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.515205058238611,0.732555718546747,0.495056999523528,2.87132768998086,0.650060246036521,0,0.386682873168488,0.308097234229289,0.614014698904518,0.413509717453592,0.107420244868274,0.435050081742686,0.426133137080504,0.890320356467374,0.991709492165869,1.34533047155574,3.44554323735377,1.51736671283325,0.464845549297286,1.25924938732256,1.3940745403212,0.308033580176089,0.532306030317022,0,0.37064843820784,0.286249773483982,0.372158369359667,0.632758849437452,0,0,1.71175595213568,2.22742273548156,0,0.539617372749944,0.823611089208164,0.1178124023456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| |||
|short_description=p3@SERTAD2 | |||
}} |
Revision as of 19:18, 12 September 2013
Short description: | p3@SERTAD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SERTAD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -386bp_to_ENST00000476805_5end |
EntrezGene: | SERTAD2 |
HGNC: | 30784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.37e-09 | 67 |
macrophage dendritic cell progenitor | 2.02e-08 | 61 |
monopoietic cell | 5.03e-08 | 59 |
monocyte | 5.03e-08 | 59 |
monoblast | 5.03e-08 | 59 |
promonocyte | 5.03e-08 | 59 |
myeloid lineage restricted progenitor cell | 7.65e-08 | 66 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.07e-08 | 76 |
bone element | 5.52e-08 | 82 |
regional part of forebrain | 1.50e-07 | 41 |
forebrain | 1.50e-07 | 41 |
anterior neural tube | 1.50e-07 | 41 |
future forebrain | 1.50e-07 | 41 |
regional part of cerebral cortex | 1.89e-07 | 22 |
neocortex | 2.06e-07 | 20 |
immune system | 3.32e-07 | 93 |
skeletal element | 3.89e-07 | 90 |
cerebral hemisphere | 7.64e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.