FFCP PHASE1:Mm9::chr13:39052367..39052408,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=108652|HGNC=|MCL_coexpression_id=1230|UniProt=Q922Q5|association_with_transcript=0bp_to_ENSMUST00000167513,ENSMUST00000171272,NM_001170430,NM_134060,uc007qdy.2,uc007qdz.2,uc007qea.2_5end|description=CAGE_peak_1_at_Slc35b3_5end|id=chr13:39052367..39052408,-|ontology_enrichment_celltype=CL:0002563!7.56e-07!9;CL:0002251!7.56e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,7.56e-07,9;CL:0002251,7.56e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!2.37e-14!130;UBERON:0000925!2.37e-14!130;UBERON:0006595!2.37e-14!130;UBERON:0001007!1.39e-13!128;UBERON:0001555!1.39e-13!128;UBERON:0007026!1.39e-13!128;UBERON:0004921!8.81e-13!126;UBERON:0004185!8.81e-13!126;UBERON:0000160!5.26e-11!43;UBERON:0000344!5.98e-10!15;UBERON:0005409!7.36e-10!59;UBERON:0001242!3.75e-09!13;UBERON:0000060!3.75e-09!13;UBERON:0001262!3.75e-09!13;UBERON:0004786!3.75e-09!13;UBERON:0000490!2.45e-08!66;UBERON:0005911!9.44e-08!69;UBERON:0004923!1.03e-07!24;UBERON:0003929!1.45e-07!55;UBERON:0003408!3.77e-07!24;UBERON:0002370!5.10e-07!23;UBERON:0000974!5.10e-07!23;UBERON:0004807!5.10e-07!23;UBERON:0005058!5.10e-07!23;UBERON:0003351!5.10e-07!23;UBERON:0009113!5.10e-07!23;UBERON:0003295!5.10e-07!23;UBERON:0009722!5.10e-07!23;UBERON:0005562!5.10e-07!23;UBERON:0007690!5.10e-07!23;UBERON:0003350!7.56e-07!9;UBERON:0004808!7.56e-07!9;UBERON:0001277!7.56e-07!9;UBERON:0000485!8.15e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.22e-15,118;UBERON:0000925,6.22e-15,118;UBERON:0006595,6.22e-15,118;UBERON:0001007,3.77e-14,116;UBERON:0001555,3.77e-14,116;UBERON:0007026,3.77e-14,116;UBERON:0000160,5.15e-14,31;UBERON:0004921,2.49e-13,114;UBERON:0005409,1.78e-11,47;UBERON:0000344,5.98e-10,15;UBERON:0001242,3.75e-09,13;UBERON:0001262,3.75e-09,13;UBERON:0004786,3.75e-09,13;UBERON:0000490,2.45e-08,66;UBERON:0005911,9.44e-08,69;UBERON:0004923,1.03e-07,24;UBERON:0003929,1.45e-07,55;UBERON:0003408,3.77e-07,24;UBERON:0002370,5.10e-07,23;UBERON:0000974,5.10e-07,23;UBERON:0004807,5.10e-07,23;UBERON:0005058,5.10e-07,23;UBERON:0003351,5.10e-07,23;UBERON:0009113,5.10e-07,23;UBERON:0003295,5.10e-07,23;UBERON:0009722,5.10e-07,23;UBERON:0005562,5.10e-07,23;UBERON:0007690,5.10e-07,23;UBERON:0003350,7.56e-07,9;UBERON:0004808,7.56e-07,9;UBERON:0001277,7.56e-07,9;UBERON:0000485,8.15e-07,11|phase1_expression=8.32774004944929,31.0588112799031,39.1299345875001,24.4996011158532,25.5456822272637,22.6637017081051,18.221785966451,32.4099541838356,15.0643932702283,16.1504523162175,15.7520530767465,13.9601278241839,29.7889270080298,35.230422174856,7.32841475994458,11.9460407759997,3.49780939064073,18.7699988388151,17.9619908023518,16.9755860719212,9.09963204616447,8.53902180327614,10.7091913546964,15.8392498565473,14.2233754261645,37.3250776674763,31.0148637234534,25.8565479223067,20.1424824623756,22.4306815486338,21.7295900442199,8.25539875497521,6.1506478758457,0,20.5084650023405,15.7922913090568,17.9669033510885,17.996860121687,17.1893775795236,12.5645698553712,13.5293242247133,18.442228093878,15.0508209439658,6.54663453473002,6.48812359804893,7.52541683862894,3.12956537739216,1.52617609466313,1.5378032791413,4.27745777963423,5.87942970826523,4.31257693094915,14.0937389088499,23.211588544363,17.1407837562657,9.77585856936598,7.44986943840768,7.21940929188419,3.43937983461316,7.40587370980846,5.07065122804943,4.40497891689872,5.33576877666684,6.74924787961049,4.94433181283487,3.5524005747305,2.09720077362883,1.53687322128622,6.947204024668,4.45519596494579,4.20649922702764,4.57041575046086,7.50953039235486,5.51208596467293,6.70918297127655,5.51531271966013,0,4.85211884723713,4.6081959976873,5.14356522147756,8.05091263701205,4.68822033501084,5.02529398202486,4.50210088025344,3.81995619442025,4.41942878210502,5.41012387036591,8.57437450796383,12.1919171266426,8.08615693142605,11.8844440367688,16.3480536626463,4.75979933595425,3.2382191498269,9.09686984426737,7.16843019355737,4.35377702408431,6.98764322570037,7.53379413348319,4.94675404314476,12.8167511996779,8.98285341900225,22.9324715735981,7.11066703153331,4.11332977921307,6.08063677140237,6.57181778519218,9.02052649780574,18.6435276225964,7.86743337043571,7.11289839741157,5.48037860961854,5.76538743140146,8.44046787094686,10.5829836422134,7.03732911446183,18.539622580078,5.49477556295664,7.96149496754887,6.14714029800155,6.8460870722722,6.30337829075789,13.0474232852686,4.39171195517321,6.28340120440365,16.0937944781413,10.3041007075091,11.9980546198682,7.75128385145695,4.04434726393021,6.8625090422794,8.92145900001337,4.86708096538374,7.92717917724025,5.194701113989,3.24482526135515,10.3876151127323,8.33526703087623,12.1306924048164,9.25944165900485,5.46505860443356,6.43725892413724,4.32149111532838,5.57607825992146,11.2940588591204,8.58361925908494,7.30873451565885,6.46758426847539,3.66465587985832,5.67318240503458,5.98233822157426,9.64461222681329,7.22922847986555,9.05455632957633,6.37924622864625,7.76233640592123,12.6398373716382,10.036568377473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| ||
|EntrezGene=108652 | |||
|HGNC= | |||
|MCL_coexpression_id=1230 | |||
|UniProt=Q922Q5 | |||
|association_with_transcript=0bp_to_ENSMUST00000167513,ENSMUST00000171272,NM_001170430,NM_134060,uc007qdy.2,uc007qdz.2,uc007qea.2_5end | |||
|description=CAGE_peak_1_at_Slc35b3_5end | |||
|id=chr13:39052367..39052408,- | |||
|ontology_enrichment_celltype=CL:0002563!7.56e-07!9;CL:0002251!7.56e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.56e-07,9;CL:0002251,7.56e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.37e-14!130;UBERON:0000925!2.37e-14!130;UBERON:0006595!2.37e-14!130;UBERON:0001007!1.39e-13!128;UBERON:0001555!1.39e-13!128;UBERON:0007026!1.39e-13!128;UBERON:0004921!8.81e-13!126;UBERON:0004185!8.81e-13!126;UBERON:0000160!5.26e-11!43;UBERON:0000344!5.98e-10!15;UBERON:0005409!7.36e-10!59;UBERON:0001242!3.75e-09!13;UBERON:0000060!3.75e-09!13;UBERON:0001262!3.75e-09!13;UBERON:0004786!3.75e-09!13;UBERON:0000490!2.45e-08!66;UBERON:0005911!9.44e-08!69;UBERON:0004923!1.03e-07!24;UBERON:0003929!1.45e-07!55;UBERON:0003408!3.77e-07!24;UBERON:0002370!5.10e-07!23;UBERON:0000974!5.10e-07!23;UBERON:0004807!5.10e-07!23;UBERON:0005058!5.10e-07!23;UBERON:0003351!5.10e-07!23;UBERON:0009113!5.10e-07!23;UBERON:0003295!5.10e-07!23;UBERON:0009722!5.10e-07!23;UBERON:0005562!5.10e-07!23;UBERON:0007690!5.10e-07!23;UBERON:0003350!7.56e-07!9;UBERON:0004808!7.56e-07!9;UBERON:0001277!7.56e-07!9;UBERON:0000485!8.15e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.22e-15,118;UBERON:0000925,6.22e-15,118;UBERON:0006595,6.22e-15,118;UBERON:0001007,3.77e-14,116;UBERON:0001555,3.77e-14,116;UBERON:0007026,3.77e-14,116;UBERON:0000160,5.15e-14,31;UBERON:0004921,2.49e-13,114;UBERON:0005409,1.78e-11,47;UBERON:0000344,5.98e-10,15;UBERON:0001242,3.75e-09,13;UBERON:0001262,3.75e-09,13;UBERON:0004786,3.75e-09,13;UBERON:0000490,2.45e-08,66;UBERON:0005911,9.44e-08,69;UBERON:0004923,1.03e-07,24;UBERON:0003929,1.45e-07,55;UBERON:0003408,3.77e-07,24;UBERON:0002370,5.10e-07,23;UBERON:0000974,5.10e-07,23;UBERON:0004807,5.10e-07,23;UBERON:0005058,5.10e-07,23;UBERON:0003351,5.10e-07,23;UBERON:0009113,5.10e-07,23;UBERON:0003295,5.10e-07,23;UBERON:0009722,5.10e-07,23;UBERON:0005562,5.10e-07,23;UBERON:0007690,5.10e-07,23;UBERON:0003350,7.56e-07,9;UBERON:0004808,7.56e-07,9;UBERON:0001277,7.56e-07,9;UBERON:0000485,8.15e-07,11 | |||
|phase1_expression=8.32774004944929,31.0588112799031,39.1299345875001,24.4996011158532,25.5456822272637,22.6637017081051,18.221785966451,32.4099541838356,15.0643932702283,16.1504523162175,15.7520530767465,13.9601278241839,29.7889270080298,35.230422174856,7.32841475994458,11.9460407759997,3.49780939064073,18.7699988388151,17.9619908023518,16.9755860719212,9.09963204616447,8.53902180327614,10.7091913546964,15.8392498565473,14.2233754261645,37.3250776674763,31.0148637234534,25.8565479223067,20.1424824623756,22.4306815486338,21.7295900442199,8.25539875497521,6.1506478758457,0,20.5084650023405,15.7922913090568,17.9669033510885,17.996860121687,17.1893775795236,12.5645698553712,13.5293242247133,18.442228093878,15.0508209439658,6.54663453473002,6.48812359804893,7.52541683862894,3.12956537739216,1.52617609466313,1.5378032791413,4.27745777963423,5.87942970826523,4.31257693094915,14.0937389088499,23.211588544363,17.1407837562657,9.77585856936598,7.44986943840768,7.21940929188419,3.43937983461316,7.40587370980846,5.07065122804943,4.40497891689872,5.33576877666684,6.74924787961049,4.94433181283487,3.5524005747305,2.09720077362883,1.53687322128622,6.947204024668,4.45519596494579,4.20649922702764,4.57041575046086,7.50953039235486,5.51208596467293,6.70918297127655,5.51531271966013,0,4.85211884723713,4.6081959976873,5.14356522147756,8.05091263701205,4.68822033501084,5.02529398202486,4.50210088025344,3.81995619442025,4.41942878210502,5.41012387036591,8.57437450796383,12.1919171266426,8.08615693142605,11.8844440367688,16.3480536626463,4.75979933595425,3.2382191498269,9.09686984426737,7.16843019355737,4.35377702408431,6.98764322570037,7.53379413348319,4.94675404314476,12.8167511996779,8.98285341900225,22.9324715735981,7.11066703153331,4.11332977921307,6.08063677140237,6.57181778519218,9.02052649780574,18.6435276225964,7.86743337043571,7.11289839741157,5.48037860961854,5.76538743140146,8.44046787094686,10.5829836422134,7.03732911446183,18.539622580078,5.49477556295664,7.96149496754887,6.14714029800155,6.8460870722722,6.30337829075789,13.0474232852686,4.39171195517321,6.28340120440365,16.0937944781413,10.3041007075091,11.9980546198682,7.75128385145695,4.04434726393021,6.8625090422794,8.92145900001337,4.86708096538374,7.92717917724025,5.194701113989,3.24482526135515,10.3876151127323,8.33526703087623,12.1306924048164,9.25944165900485,5.46505860443356,6.43725892413724,4.32149111532838,5.57607825992146,11.2940588591204,8.58361925908494,7.30873451565885,6.46758426847539,3.66465587985832,5.67318240503458,5.98233822157426,9.64461222681329,7.22922847986555,9.05455632957633,6.37924622864625,7.76233640592123,12.6398373716382,10.0365683774739,10.2298859782413,6.00664740352955,5.62862543954631,5.22179978236943,4.7348947117042,5.1158700254325,5.55361606394562,3.48800917125612,4.82892122519315,8.05680862333469,4.60767579757745,5.41752631461014,3.64809642956351,4.82459958503597,2.41505126820156,4.83143107537338,4.20579897128254,6.5858951922742,17.5121954981413,15.6025834331491,5.75878276445132,8.36052018697579,9.53619213783491,10.6892268050372,12.2307924114679,13.1255682017666,14.7104009078799,11.8583247401288,18.0961350336194,18.502951899827,16.182019230887,14.3811105384675,15.1296634912286,14.5373129475688,7.01771233526402,6.740662243974,7.88954149711563,7.33144780243131,8.53390943537553,12.764719220038,9.67519018001136,8.41377843483732,8.63493003127561,9.62497878590044,5.33614728756868,5.33904338291501,5.30709286805648,4.94696647246678,6.28866376304359,5.06472035480075,3.56476192493988,8.91858026097513,12.1601420081277,9.88421087477093,10.0637744569148,7.07067800570156,14.3537329632698,6.31447194867779,8.96987067609561,9.16642690590398,8.86815312799702,5.49525094134406,5.70377417547091,6.11082308790677,5.86725620721255,7.53778158488171,10.7119638398706,11.1226179278945,8.6699329258405,10.1873757238436,11.3212885746816,9.99566219766002,9.84304396635605,11.8612228036839,12.0633027151418,9.24639662491806,9.34352118736169,10.2096596132751,3.69266356971921,4.80567915028033,2.62295912602681,1.76729649043061,5.04813151066011,7.02789739733949,4.30846795465598,7.40803273652911,7.12955757063661,7.64306633129848,6.47697122679831,4.9683495844923,7.11518000303742,6.10510501201433,8.51640511249612,4.62970569534864,10.5876523579824,9.23832688646199,6.63725691699814,6.5550771761845,5.74414758233027,8.67583366877131,4.72483028609236,8.60818414242997,14.4719844174204,6.18007340111759,12.4774082434652,9.7971394960103,6.32511651449993,8.25084345985495,6.80879211507576,5.58189391497062,4.78627129996192,5.5727629108214,8.51233121482913,4.45922044005176,4.27827453565514,6.69822888052118,12.9069439435041,14.6164128896036,11.467476698858,9.0687439117814,10.4951877352339,8.7453741145826,7.63983001620073,8.69946768648825,16.3229268512716,5.56275906031529,7.51831875510552,5.57244543500701,4.07427960213366,7.91147519419702,7.24479406921433,7.0921233694022,14.4481665494777,13.1554365184239,17.6895966469662,11.4560474161814,5.69404788446044,9.75933442208874,9.39646465149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| |||
|short_description=p1@Slc35b3 | |||
}} |
Revision as of 00:29, 13 September 2013
Short description: | p1@Slc35b3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc35b3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1230 |
Association with transcript: | 0bp_to_ENSMUST00000167513, ENSMUST00000171272, NM_001170430, NM_134060, uc007qdy.2, uc007qdz.2, uc007qea.2_5end |
EntrezGene: | Slc35b3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.56e-07 | 9 |
epithelial cell of alimentary canal | 7.56e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 6.22e-15 | 118 |
endoderm | 6.22e-15 | 118 |
presumptive endoderm | 6.22e-15 | 118 |
digestive system | 3.77e-14 | 116 |
digestive tract | 3.77e-14 | 116 |
primitive gut | 3.77e-14 | 116 |
intestine | 5.15e-14 | 31 |
subdivision of digestive tract | 2.49e-13 | 114 |
gastrointestinal system | 1.78e-11 | 47 |
mucosa | 5.98e-10 | 15 |
intestinal mucosa | 3.75e-09 | 13 |
wall of intestine | 3.75e-09 | 13 |
gastrointestinal system mucosa | 3.75e-09 | 13 |
unilaminar epithelium | 2.45e-08 | 66 |
endo-epithelium | 9.44e-08 | 69 |
organ component layer | 1.03e-07 | 24 |
gut epithelium | 1.45e-07 | 55 |
gland of gut | 3.77e-07 | 24 |
thymus | 5.10e-07 | 23 |
neck | 5.10e-07 | 23 |
respiratory system epithelium | 5.10e-07 | 23 |
hemolymphoid system gland | 5.10e-07 | 23 |
pharyngeal epithelium | 5.10e-07 | 23 |
thymic region | 5.10e-07 | 23 |
pharyngeal gland | 5.10e-07 | 23 |
entire pharyngeal arch endoderm | 5.10e-07 | 23 |
thymus primordium | 5.10e-07 | 23 |
early pharyngeal endoderm | 5.10e-07 | 23 |
epithelium of mucosa | 7.56e-07 | 9 |
gastrointestinal system epithelium | 7.56e-07 | 9 |
intestinal epithelium | 7.56e-07 | 9 |
simple columnar epithelium | 8.15e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.