FFCP PHASE1:Hg19::chr4:42154660..42154682,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=389206|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23815|TSSclassifier=N|UniProt=Q6ZU67|association_with_transcript=212bp_to_ENST00000502486,ENST00000504360,NM_001159547,NM_207406,uc003gwm.2,uc003gwn.2_5end|description=CAGE_peak_5_at_BEND4_5end|id=chr4:42154660..42154682,-|ontology_enrichment_celltype=CL:0000945!2.13e-09!24;CL:0000826!2.13e-09!24;CL:0000236!3.92e-09!14;CL:0002322!4.96e-07!5;CL:0002319!7.41e-07!25|ontology_enrichment_celltype_v019=CL:0000236;6.23e-24;13!CL:0000945;2.79e-16;24!CL:0000817;3.80e-08;1!CL:0002032;1.18e-07;1!CL:0000557;1.18e-07;1|ontology_enrichment_celltype_v019_2=CL:0000236,2.25e-22,14;CL:0000945,1.73e-16,24;CL:0000826,1.73e-16,24;CL:0000838,8.29e-09,52;CL:0000542,1.29e-08,53;CL:0000051,1.29e-08,53;CL:0002032,4.03e-07,161;CL:0000837,4.03e-07,161|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1240;2.79e-08;39!DOID:3347;1.18e-07;1!DOID:8692;9.36e-07;31|ontology_enrichment_disease_v019_2=DOID:1240,1.23e-09,39;DOID:2531,5.61e-09,51;DOID:0060083,5.61e-09,51;DOID:3347,1.26e-07,1;DOID:8692,4.05e-07,31|ontology_enrichment_uberon=UBERON:0001017!1.96e-11!82;UBERON:0000073!2.01e-11!94;UBERON:0001016!2.01e-11!94;UBERON:0005743!4.58e-11!86;UBERON:0002780!2.05e-10!41;UBERON:0001890!2.05e-10!41;UBERON:0006240!2.05e-10!41;UBERON:0002020!2.50e-10!34;UBERON:0003528!2.50e-10!34;UBERON:0001893!3.60e-10!34;UBERON:0001869!4.68e-10!32;UBERON:0003080!5.17e-10!42;UBERON:0000955!8.12e-10!69;UBERON:0006238!8.12e-10!69;UBERON:0007023!1.27e-09!115;UBERON:0001049!1.43e-09!57;UBERON:0005068!1.43e-09!57;UBERON:0006241!1.43e-09!57;UBERON:0007135!1.43e-09!57;UBERON:0002791!1.87e-09!33;UBERON:0000956!4.84e-09!25;UBERON:0000203!4.84e-09!25;UBERON:0002616!3.15e-08!59;UBERON:0003056!1.60e-07!61|ontology_enrichment_uberon_v019=UBERON:0002370;1.27e-13;2!UBERON:0005058;1.27e-13;2!UBERON:0009113;1.27e-13;2!UBERON:0000473;5.49e-08;8|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.19e-08,8;UBERON:0002370,4.42e-07,4;UBERON:0005058,4.42e-07,4;UBERON:0009113,4.42e-07,4;UBERON:0003295,4.42e-07,4;UBERON:0005562,4.42e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85870796139317,0.410623275218653,0.627713197974014,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0,1.9903692548239,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0.546138611262131,1.77901850772711,0,0.400395987036012,3.4485146397269,0,0,2.84606484554724,1.76171156811282,4.20500550937752,1.32171328579026,2.24203425192614,0.263384084775077,0,0,0,0,0.32592226663359,0,1.94826728407911,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.654895377488563,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.662648841607426,0.813357600086629,0.310983165046111,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0.274537029736055,0.589062011728432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,3.31819189845823,0,1.59426272728822,0,0.191505370132367,0.211673582723883,2.59697552219644,3.93116049358842,0,0,0,0,0,0,0,0,0.921722292925374,1.3420566473545,0.500547425135725,0,0,0,2.16364542780786,0,1.4098700508785,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.347249989866585,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,4.86638794824577,0.332423363800313,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0.30607276163049,0,0,0.103688191397247,0,0.330991955875499,0.313932918407225,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.90392296312213,0,0,0.0633107959558787,0.391102765469606,0,0,0,0,0.572682980829578,0,0,0.124252535565433,0,0.135904206073614,0.104602846312333,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0.136203406111576,1.44677833618517,1.51293380256957,0.415440338029185,0,0,0.182248669974074,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=389206 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23815 | |||
|TSSclassifier=N | |||
|UniProt=Q6ZU67 | |||
|association_with_transcript=212bp_to_ENST00000502486,ENST00000504360,NM_001159547,NM_207406,uc003gwm.2,uc003gwn.2_5end | |||
|description=CAGE_peak_5_at_BEND4_5end | |||
|id=chr4:42154660..42154682,- | |||
|ontology_enrichment_celltype=CL:0000945!2.13e-09!24;CL:0000826!2.13e-09!24;CL:0000236!3.92e-09!14;CL:0002322!4.96e-07!5;CL:0002319!7.41e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000236;6.23e-24;13!CL:0000945;2.79e-16;24!CL:0000817;3.80e-08;1!CL:0002032;1.18e-07;1!CL:0000557;1.18e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.25e-22,14;CL:0000945,1.73e-16,24;CL:0000826,1.73e-16,24;CL:0000838,8.29e-09,52;CL:0000542,1.29e-08,53;CL:0000051,1.29e-08,53;CL:0002032,4.03e-07,161;CL:0000837,4.03e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1240;2.79e-08;39!DOID:3347;1.18e-07;1!DOID:8692;9.36e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,1.23e-09,39;DOID:2531,5.61e-09,51;DOID:0060083,5.61e-09,51;DOID:3347,1.26e-07,1;DOID:8692,4.05e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.96e-11!82;UBERON:0000073!2.01e-11!94;UBERON:0001016!2.01e-11!94;UBERON:0005743!4.58e-11!86;UBERON:0002780!2.05e-10!41;UBERON:0001890!2.05e-10!41;UBERON:0006240!2.05e-10!41;UBERON:0002020!2.50e-10!34;UBERON:0003528!2.50e-10!34;UBERON:0001893!3.60e-10!34;UBERON:0001869!4.68e-10!32;UBERON:0003080!5.17e-10!42;UBERON:0000955!8.12e-10!69;UBERON:0006238!8.12e-10!69;UBERON:0007023!1.27e-09!115;UBERON:0001049!1.43e-09!57;UBERON:0005068!1.43e-09!57;UBERON:0006241!1.43e-09!57;UBERON:0007135!1.43e-09!57;UBERON:0002791!1.87e-09!33;UBERON:0000956!4.84e-09!25;UBERON:0000203!4.84e-09!25;UBERON:0002616!3.15e-08!59;UBERON:0003056!1.60e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.27e-13;2!UBERON:0005058;1.27e-13;2!UBERON:0009113;1.27e-13;2!UBERON:0000473;5.49e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.19e-08,8;UBERON:0002370,4.42e-07,4;UBERON:0005058,4.42e-07,4;UBERON:0009113,4.42e-07,4;UBERON:0003295,4.42e-07,4;UBERON:0005562,4.42e-07,4 | |||
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|short_description=p5@BEND4 | |||
}} |
Revision as of 10:57, 13 September 2013
Short description: | p5@BEND4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_BEND4_5end |
Coexpression cluster: | NA |
Association with transcript: | 212bp_to_ENST00000502486, ENST00000504360, NM_001159547, NM_207406, uc003gwm.2, uc003gwn.2_5end |
EntrezGene: | BEND4 |
HGNC: | 23815 |
UniProt: | Q6ZU67 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.25e-22 | 14 |
lymphocyte of B lineage | 1.73e-16 | 24 |
pro-B cell | 1.73e-16 | 24 |
lymphoid lineage restricted progenitor cell | 8.29e-09 | 52 |
lymphocyte | 1.29e-08 | 53 |
common lymphoid progenitor | 1.29e-08 | 53 |
hematopoietic oligopotent progenitor cell | 4.03e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.03e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
testis | 6.19e-08 | 8 |
thymus | 4.42e-07 | 4 |
hemolymphoid system gland | 4.42e-07 | 4 |
thymic region | 4.42e-07 | 4 |
pharyngeal gland | 4.42e-07 | 4 |
thymus primordium | 4.42e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
leukemia | 1.23e-09 | 39 |
hematologic cancer | 5.61e-09 | 51 |
immune system cancer | 5.61e-09 | 51 |
osteosarcoma | 1.26e-07 | 1 |
myeloid leukemia | 4.05e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.