FFCP PHASE1:Hg19::chr5:3595977..3595999,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79192|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14358|TSSclassifier=W|UniProt=P78414|association_with_transcript=-168bp_to_ENST00000302006,NM_024337,uc003jde.2_5end|coexpression_cluster_id=C4498|description=CAGE_peak_1_at_IRX1_5end|id=chr5:3595977..3595999,+|ontology_enrichment_celltype=CL:0002620!8.62e-12!23;CL:0000057!2.71e-10!75|ontology_enrichment_celltype_v019=CL:0002620;1.68e-13;23!CL:0000622;8.28e-08;5|ontology_enrichment_celltype_v019_2=CL:0002620,1.77e-13,23;CL:0000057,1.12e-08,76;CL:0000622,8.45e-08,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002199!1.87e-16!45;UBERON:0002416!1.87e-16!45;UBERON:0003102!8.30e-16!95;UBERON:0002097!5.05e-15!40;UBERON:0004121!1.09e-12!169;UBERON:0000475!1.98e-12!365;UBERON:0000924!8.70e-12!173;UBERON:0006601!8.70e-12!173;UBERON:0003076!5.09e-11!15;UBERON:0003057!5.09e-11!15;UBERON:0000153!3.57e-10!129;UBERON:0007811!3.57e-10!129;UBERON:0004732!7.99e-10!13;UBERON:0000033!1.80e-09!123;UBERON:0004733!1.81e-09!12;UBERON:0002028!1.81e-09!12;UBERON:0007277!1.81e-09!12;UBERON:0001049!1.56e-08!57;UBERON:0005068!1.56e-08!57;UBERON:0006241!1.56e-08!57;UBERON:0007135!1.56e-08!57;UBERON:0000064!8.67e-08!219;UBERON:0002680!1.77e-07!9;UBERON:0001895!1.77e-07!9;UBERON:0010092!1.77e-07!9|ontology_enrichment_uberon_v019=UBERON:0002199;3.92e-13;46!UBERON:0002416;3.92e-13;46!UBERON:0002097;4.57e-13;41!UBERON:0004732;8.91e-13;13!UBERON:0004733;2.70e-12;12!UBERON:0002028;2.70e-12;12!UBERON:0003102;4.45e-12;50!UBERON:0002680;1.57e-09;9!UBERON:0001895;1.57e-09;9!UBERON:0001044;2.67e-08;6!UBERON:0003293;2.67e-08;6!UBERON:0003294;2.67e-08;6!UBERON:0010047;2.67e-08;6!UBERON:0003408;2.67e-08;6!UBERON:0000167;2.67e-08;6!UBERON:0002298;5.78e-07;6!UBERON:0002037;6.08e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.25e-18,46;UBERON:0002416,2.25e-18,46;UBERON:0002097,3.05e-17,41;UBERON:0003102,8.31e-17,99;UBERON:0003076,1.64e-14,15;UBERON:0003057,1.64e-14,15;UBERON:0004732,7.11e-13,13;UBERON:0004733,2.18e-12,12;UBERON:0002028,2.18e-12,12;UBERON:0007277,2.18e-12,12;UBERON:0002680,1.14e-09,9;UBERON:0001895,1.14e-09,9;UBERON:0010092,1.14e-09,9;UBERON:0004121,1.11e-08,171;UBERON:0000924,1.11e-08,171;UBERON:0006601,1.11e-08,171;UBERON:0001044,2.53e-08,6;UBERON:0003293,2.53e-08,6;UBERON:0003294,2.53e-08,6;UBERON:0010047,2.53e-08,6;UBERON:0000167,2.53e-08,6;UBERON:0010371,2.85e-08,104;UBERON:0002037,4.44e-07,6;UBERON:0006215,4.44e-07,6;UBERON:0002298,6.36e-07,6|phase1_expression=1.09007027562334,1.07050261945492,0,2.00146596706261,0,0,0,0.631719873426831,9.14149698699435,1.22866968250754,16.7472280313383,10.9220686065086,13.1883489114227,0,0,0,0,0,0,15.0207690853681,23.6640801843333,33.5396551981554,0.85870796139317,0.684372125364421,0,0,0,0,0,0,0.464448369948228,0.919421224478927,4.51808878167375,3.32778609150109,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,1.5062593682237,0,0,0,0,0,0,0,0,0,1.72046919021225,0.347140501607594,0.56530794192401,0,0,0.626984899610432,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,9.15797509499322,0,0.12663051166458,1.32409180813219,0.860509862246441,1.77334191099179,6.72813120170769,0,2.22000793575444,0.311211035399766,0,0,0,0,3.04617861383936,0.936480230490962,0.570471821544449,3.43731965269142,4.93224894303812,8.41739310714284,7.44389275521917,0,0,0.206651562351531,0,0,0,0,0.168336113954066,0,0,0.438977620880838,0.612975591598039,3.00476117813194,0.340296549480063,7.89314397030993,3.20336083227851,3.81477422087211,12.9039171316293,4.84346887420663,4.12224864073007,2.79175284497385,2.53164498361899,2.33848812386877,8.07788077581166,2.57739716198438,2.10139873864455,4.9701342952326,2.31729825923573,1.3564847384839,1.54608682530637,4.90943017063502,5.44928731239107,4.39105342066543,4.24095258628753,4.06678800043314,6.73796857599908,3.02785021050754,2.91981887260664,0,3.85944562915731,6.90674606762403,2.78620756819187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.70701484124853,2.24803506515239,1.40740561376283,3.51836091602412,6.51616610620649,15.5990217791937,0,0,0,0.144366447761074,0,0,0,0,0,0,0,5.62403003920662,5.20744597416465,3.82792762554443,8.14982556595919,14.8223308642121,27.6035528998952,0,0,0,0.144119953416961,0.12624243342638,0.952468414382536,0.763976851116555,4.68869788840188,3.4214489204541,1.64523988325318,0,0.857479297891735,0,0,0,0,3.57656445851882,1.690605505112,0,0,0.257207374262142,9.92943924162948,0,0,0,0,0.977208552881205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00509759200609,1.91381625495949,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0.553107505625109,0,0,0.343143423810856,0,0,0,11.8219752864041,24.9653159265746,37.79878666621,0.496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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=79192 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14358 | |||
|TSSclassifier=W | |||
|UniProt=P78414 | |||
|association_with_transcript=-168bp_to_ENST00000302006,NM_024337,uc003jde.2_5end | |||
|coexpression_cluster_id=C4498 | |||
|description=CAGE_peak_1_at_IRX1_5end | |||
|id=chr5:3595977..3595999,+ | |||
|ontology_enrichment_celltype=CL:0002620!8.62e-12!23;CL:0000057!2.71e-10!75 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.68e-13;23!CL:0000622;8.28e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.77e-13,23;CL:0000057,1.12e-08,76;CL:0000622,8.45e-08,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!1.87e-16!45;UBERON:0002416!1.87e-16!45;UBERON:0003102!8.30e-16!95;UBERON:0002097!5.05e-15!40;UBERON:0004121!1.09e-12!169;UBERON:0000475!1.98e-12!365;UBERON:0000924!8.70e-12!173;UBERON:0006601!8.70e-12!173;UBERON:0003076!5.09e-11!15;UBERON:0003057!5.09e-11!15;UBERON:0000153!3.57e-10!129;UBERON:0007811!3.57e-10!129;UBERON:0004732!7.99e-10!13;UBERON:0000033!1.80e-09!123;UBERON:0004733!1.81e-09!12;UBERON:0002028!1.81e-09!12;UBERON:0007277!1.81e-09!12;UBERON:0001049!1.56e-08!57;UBERON:0005068!1.56e-08!57;UBERON:0006241!1.56e-08!57;UBERON:0007135!1.56e-08!57;UBERON:0000064!8.67e-08!219;UBERON:0002680!1.77e-07!9;UBERON:0001895!1.77e-07!9;UBERON:0010092!1.77e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;3.92e-13;46!UBERON:0002416;3.92e-13;46!UBERON:0002097;4.57e-13;41!UBERON:0004732;8.91e-13;13!UBERON:0004733;2.70e-12;12!UBERON:0002028;2.70e-12;12!UBERON:0003102;4.45e-12;50!UBERON:0002680;1.57e-09;9!UBERON:0001895;1.57e-09;9!UBERON:0001044;2.67e-08;6!UBERON:0003293;2.67e-08;6!UBERON:0003294;2.67e-08;6!UBERON:0010047;2.67e-08;6!UBERON:0003408;2.67e-08;6!UBERON:0000167;2.67e-08;6!UBERON:0002298;5.78e-07;6!UBERON:0002037;6.08e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.25e-18,46;UBERON:0002416,2.25e-18,46;UBERON:0002097,3.05e-17,41;UBERON:0003102,8.31e-17,99;UBERON:0003076,1.64e-14,15;UBERON:0003057,1.64e-14,15;UBERON:0004732,7.11e-13,13;UBERON:0004733,2.18e-12,12;UBERON:0002028,2.18e-12,12;UBERON:0007277,2.18e-12,12;UBERON:0002680,1.14e-09,9;UBERON:0001895,1.14e-09,9;UBERON:0010092,1.14e-09,9;UBERON:0004121,1.11e-08,171;UBERON:0000924,1.11e-08,171;UBERON:0006601,1.11e-08,171;UBERON:0001044,2.53e-08,6;UBERON:0003293,2.53e-08,6;UBERON:0003294,2.53e-08,6;UBERON:0010047,2.53e-08,6;UBERON:0000167,2.53e-08,6;UBERON:0010371,2.85e-08,104;UBERON:0002037,4.44e-07,6;UBERON:0006215,4.44e-07,6;UBERON:0002298,6.36e-07,6 | |||
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| |||
|short_description=p1@IRX1 | |||
}} |
Revision as of 15:31, 13 September 2013
Short description: | p1@IRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IRX1_5end |
Coexpression cluster: | C4498_acute_Placental_salivary_Astrocyte_Mammary_breast_Trabecular |
Association with transcript: | -168bp_to_ENST00000302006, NM_024337, uc003jde.2_5end |
EntrezGene: | IRX1 |
HGNC: | 14358 |
UniProt: | P78414 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.77e-13 | 23 |
fibroblast | 1.12e-08 | 76 |
acinar cell | 8.45e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
integument | 2.25e-18 | 46 |
integumental system | 2.25e-18 | 46 |
skin of body | 3.05e-17 | 41 |
surface structure | 8.31e-17 | 99 |
posterior neural tube | 1.64e-14 | 15 |
chordal neural plate | 1.64e-14 | 15 |
segmental subdivision of nervous system | 7.11e-13 | 13 |
segmental subdivision of hindbrain | 2.18e-12 | 12 |
hindbrain | 2.18e-12 | 12 |
presumptive hindbrain | 2.18e-12 | 12 |
regional part of metencephalon | 1.14e-09 | 9 |
metencephalon | 1.14e-09 | 9 |
future metencephalon | 1.14e-09 | 9 |
ectoderm-derived structure | 1.11e-08 | 171 |
ectoderm | 1.11e-08 | 171 |
presumptive ectoderm | 1.11e-08 | 171 |
saliva-secreting gland | 2.53e-08 | 6 |
gland of oral region | 2.53e-08 | 6 |
gland of foregut | 2.53e-08 | 6 |
oral gland | 2.53e-08 | 6 |
oral cavity | 2.53e-08 | 6 |
ecto-epithelium | 2.85e-08 | 104 |
cerebellum | 4.44e-07 | 6 |
rhombic lip | 4.44e-07 | 6 |
brainstem | 6.36e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.