FFCP PHASE1:Mm9::chr4:133430573..133430584,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20111|HGNC=|MCL_coexpression_id=657|UniProt=|association_with_transcript=47bp_to_uc008vdm.2_5end|description=CAGE_peak_7_at_Rps6ka1_5end|id=chr4:133430573..133430584,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000049,1.62e-13,19;CL:0000557,1.31e-12,7;CL:0000988,5.01e-10,32;CL:0002032,5.01e-10,32;CL:0000037,5.01e-10,32;CL:0000837,5.01e-10,32;CL:0002320,1.67e-08,46;CL:0000134,1.67e-08,46;CL:0000763,2.25e-08,16;CL:0000219,9.35e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,7.47e-09,3;DOID:4045,7.47e-09,3|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002204,4.33e-14,32;UBERON:0001474,2.27e-13,22;UBERON:0004765,2.27e-13,22;UBERON:0001434,2.27e-13,22;UBERON:0002371,3.33e-13,16;UBERON:0002193,1.12e-08,48;UBERON:0002405,1.12e-08,48;UBERON:0002384,1.67e-08,46;UBERON:0002390,3.58e-08,45;UBERON:0003061,3.58e-08,45|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,1.26184866143295,1.23402990245165,0,0.17008658030214,1.88652807281682,1.56719873483361,0.639969691173627,1.83527424853736,0,0,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0,0,0,10.8818223991596,5.4693474116666,12.5645698553712,1.76469446409304,5.46436387966757,7.76816564849846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515672092277442,0,0,0,0,0,1.7997994345628,0,3.5524005747305,0.299600110518405,1.92109152660777,0,0,0.210324961351382,0,0.441737081903227,0,0,0,0,0,0,0.131886287730194,0,0,0,0.56276261003168,0.15279824777681,0.294628585473668,0.284743361598206,0.186399445825301,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.148442139064825,0.173485326766136,0.608930956624282,0.461230994512117,0.150722640552623,0.470354828542819,0.376999773989026,0,0,2.65383165584962,0.161766849947409,0.441683036920787,2.90925151881133,0,0,0,0.255457055208591,5.75112597628417,3.59941638596045,5.97230067243404,0.149790639404823,0,0,0.347648640384553,0,0.20778804455956,0.162241263067758,0.203678727700633,2.23932547098167,0,0.210441855886474,0,0,0,0,0,0.12811372028485,0,0,0,0,0.351902248327898,0,0,0,0.411564272815887,0,7.72434506044558,7.20574139921202,7.95657798307659,0,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,1.09775057645525,0.268412837520744,0.210289948564127,0,0.330418782983798,0,0,0,0.257734922644187,0,0,0.190225626112559,0,0.494096864172033,0.251335208800269,0.198956472041151,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0.342745537829186,0,0,0,0,0.0632365371242573,0,0.156998727841375,0,0,0,0.196558995113203,1.34917267430912,0.608580364165509,0.482354319504834,0.50925170356284,1.72617682470486,1.94562272130042,0.823684239564244,0,0.372140947668503,0.624075346229121,0,0.179397413521912,0,0.369506380333209,0,0,0,0,0,0.476087281772027,0.195133647857799,0.315270288212382,0.221464689648775,0.478364305972461,0.983179888294428,1.55416483679306,0.433947175744535,3.01582567878545,1.63171705145613,0,0.551873492609465,0.160550589987792,0.234423373184406,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0.488660878060728,0.329940245945071,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0,0.535106452806212,0.164549020602121,0,0,0,0.220528398054962,0.16488625294148,0,0.241251699712623,0.119372344003136,0,0.291480836629851,0.370850604021019,0.683483523191411,1.44470807574256,1.66675074632741,1.50694765603753,0.956859594047176,1.37266903923914,2.20971958992012,1.95932033253121,1.52019971184866,0,0,0.203319467126849,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,1.01362607645082,0.718976700153791,0.129920822977795,0,0,0,0.147689527174577,0,0,0.100826185136841,0.194915761479505,0.0962118416403295,0,0.226730383615211,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0.460325236507177,1.71868654031819,0.343706364687375,0,0,0,0.45032120322422,0,0,0,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.44449345560323,0,0,0.252697211763798,0.25347929989024,0.188626341386076,0,0.128050304809739,0.17230640686684,0,0,0,0,0.147198920134397,0,0.354951612318675,0.476872379894642,0.145346416632329,0.0941093804153306,0,0.182927972872773,0,0,0,0,0.394017929502254,0,0,0,0.249810577937946,0.233931608445408,0.429742108096597,0,0.661774257358546,0.463735671240843|short_description=p7@Rps6ka1}} | ||
|EntrezGene=20111 | |||
|HGNC= | |||
|MCL_coexpression_id=657 | |||
|UniProt= | |||
|association_with_transcript=47bp_to_uc008vdm.2_5end | |||
|description=CAGE_peak_7_at_Rps6ka1_5end | |||
|id=chr4:133430573..133430584,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000049,1.62e-13,19;CL:0000557,1.31e-12,7;CL:0000988,5.01e-10,32;CL:0002032,5.01e-10,32;CL:0000037,5.01e-10,32;CL:0000837,5.01e-10,32;CL:0002320,1.67e-08,46;CL:0000134,1.67e-08,46;CL:0000763,2.25e-08,16;CL:0000219,9.35e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,7.47e-09,3;DOID:4045,7.47e-09,3 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,4.33e-14,32;UBERON:0001474,2.27e-13,22;UBERON:0004765,2.27e-13,22;UBERON:0001434,2.27e-13,22;UBERON:0002371,3.33e-13,16;UBERON:0002193,1.12e-08,48;UBERON:0002405,1.12e-08,48;UBERON:0002384,1.67e-08,46;UBERON:0002390,3.58e-08,45;UBERON:0003061,3.58e-08,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,1.26184866143295,1.23402990245165,0,0.17008658030214,1.88652807281682,1.56719873483361,0.639969691173627,1.83527424853736,0,0,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0,0,0,10.8818223991596,5.4693474116666,12.5645698553712,1.76469446409304,5.46436387966757,7.76816564849846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515672092277442,0,0,0,0,0,1.7997994345628,0,3.5524005747305,0.299600110518405,1.92109152660777,0,0,0.210324961351382,0,0.441737081903227,0,0,0,0,0,0,0.131886287730194,0,0,0,0.56276261003168,0.15279824777681,0.294628585473668,0.284743361598206,0.186399445825301,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0.258937883647172,0.148442139064825,0.173485326766136,0.608930956624282,0.461230994512117,0.150722640552623,0.470354828542819,0.376999773989026,0,0,2.65383165584962,0.161766849947409,0.441683036920787,2.90925151881133,0,0,0,0.255457055208591,5.75112597628417,3.59941638596045,5.97230067243404,0.149790639404823,0,0,0.347648640384553,0,0.20778804455956,0.162241263067758,0.203678727700633,2.23932547098167,0,0.210441855886474,0,0,0,0,0,0.12811372028485,0,0,0,0,0.351902248327898,0,0,0,0.411564272815887,0,7.72434506044558,7.20574139921202,7.95657798307659,0,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,1.09775057645525,0.268412837520744,0.210289948564127,0,0.330418782983798,0,0,0,0.257734922644187,0,0,0.190225626112559,0,0.494096864172033,0.251335208800269,0.198956472041151,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0.342745537829186,0,0,0,0,0.0632365371242573,0,0.156998727841375,0,0,0,0.196558995113203,1.34917267430912,0.608580364165509,0.482354319504834,0.50925170356284,1.72617682470486,1.94562272130042,0.823684239564244,0,0.372140947668503,0.624075346229121,0,0.179397413521912,0,0.369506380333209,0,0,0,0,0,0.476087281772027,0.195133647857799,0.315270288212382,0.221464689648775,0.478364305972461,0.983179888294428,1.55416483679306,0.433947175744535,3.01582567878545,1.63171705145613,0,0.551873492609465,0.160550589987792,0.234423373184406,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0.321321316421807,0.141940085208269,0,0.488660878060728,0.329940245945071,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0,0.535106452806212,0.164549020602121,0,0,0,0.220528398054962,0.16488625294148,0,0.241251699712623,0.119372344003136,0,0.291480836629851,0.370850604021019,0.683483523191411,1.44470807574256,1.66675074632741,1.50694765603753,0.956859594047176,1.37266903923914,2.20971958992012,1.95932033253121,1.52019971184866,0,0,0.203319467126849,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0.247960367176008,0,0.129614973291793,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,1.01362607645082,0.718976700153791,0.129920822977795,0,0,0,0.147689527174577,0,0,0.100826185136841,0.194915761479505,0.0962118416403295,0,0.226730383615211,0,0,0,0,0,0.183151624267265,0,0,0.564751842617067,0.460325236507177,1.71868654031819,0.343706364687375,0,0,0,0.45032120322422,0,0,0,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.44449345560323,0,0,0.252697211763798,0.25347929989024,0.188626341386076,0,0.128050304809739,0.17230640686684,0,0,0,0,0.147198920134397,0,0.354951612318675,0.476872379894642,0.145346416632329,0.0941093804153306,0,0.182927972872773,0,0,0,0,0.394017929502254,0,0,0,0.249810577937946,0.233931608445408,0.429742108096597,0,0.661774257358546,0.463735671240843 | |||
|short_description=p7@Rps6ka1 | |||
}} |
Revision as of 04:02, 14 September 2013
Short description: | p7@Rps6ka1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Rps6ka1_5end |
Coexpression cluster: | MCL_coexpression_mm9:657 |
Association with transcript: | 47bp_to_uc008vdm.2_5end |
EntrezGene: | Rps6ka1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
common myeloid progenitor | 1.62e-13 | 19 |
granulocyte monocyte progenitor cell | 1.31e-12 | 7 |
hematopoietic cell | 5.01e-10 | 32 |
hematopoietic oligopotent progenitor cell | 5.01e-10 | 32 |
hematopoietic stem cell | 5.01e-10 | 32 |
hematopoietic multipotent progenitor cell | 5.01e-10 | 32 |
connective tissue cell | 1.67e-08 | 46 |
mesenchymal cell | 1.67e-08 | 46 |
myeloid cell | 2.25e-08 | 16 |
motile cell | 9.35e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 4.33e-14 | 32 |
bone element | 2.27e-13 | 22 |
skeletal element | 2.27e-13 | 22 |
skeletal system | 2.27e-13 | 22 |
bone marrow | 3.33e-13 | 16 |
hemolymphoid system | 1.12e-08 | 48 |
immune system | 1.12e-08 | 48 |
connective tissue | 1.67e-08 | 46 |
hematopoietic system | 3.58e-08 | 45 |
blood island | 3.58e-08 | 45 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 7.47e-09 | 3 |
muscle cancer | 7.47e-09 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.