FFCP PHASE1:Hg19::chr9:118454273..118454278,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3373|description=CAGE_peak_at_chr9:118454273..118454278,+|id=chr9:118454273..118454278,+|ontology_enrichment_celltype=CL:0000569!2.61e-22!4;CL:0000011!2.61e-22!4;CL:0000359!2.27e-17!32;CL:0002494!1.96e-15!16;CL:0000192!9.95e-13!42;CL:0000514!9.95e-13!42;CL:0000187!2.96e-11!54;CL:0002589!9.65e-11!2;CL:0000680!1.54e-10!57;CL:0000056!1.54e-10!57;CL:0000355!1.54e-10!57;CL:0000048!1.88e-10!430;CL:0000723!3.29e-10!436;CL:0000183!4.21e-10!59;CL:0000393!6.79e-10!60;CL:0000211!6.79e-10!60;CL:0000034!6.80e-10!444;CL:0002539!7.91e-09!10;CL:0002582!5.41e-08!3;CL:0000055!7.69e-08!180|ontology_enrichment_celltype_v019=CL:0000569;2.37e-56;4!CL:0002494;2.97e-25;16!CL:0002539;7.29e-11;10!CL:1000306;1.75e-07;4!CL:0002547;1.75e-07;4|ontology_enrichment_celltype_v019_2=CL:0000569,3.14e-56,4;CL:0000011,3.14e-56,4;CL:0002494,3.81e-25,16;CL:0002539,5.98e-11,10;CL:1000306,1.69e-07,4;CL:0002547,1.69e-07,4|ontology_enrichment_development_v019=CL:0000011;2.37e-56;4|ontology_enrichment_disease=DOID:2394!8.04e-23!14;DOID:120!4.58e-14!27;DOID:193!5.45e-13!29|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002119!4.51e-21!4;UBERON:0004531!4.51e-21!4;UBERON:0000992!6.72e-19!13;UBERON:0004872!2.78e-18!84;UBERON:0001637!3.37e-18!42;UBERON:0003509!3.37e-18!42;UBERON:0004572!3.37e-18!42;UBERON:0004573!5.25e-17!33;UBERON:0004571!5.25e-17!33;UBERON:0004535!5.82e-13!110;UBERON:0001009!1.66e-12!113;UBERON:0001981!6.26e-12!60;UBERON:0007500!6.26e-12!60;UBERON:0004537!6.26e-12!60;UBERON:0006965!6.26e-12!60;UBERON:0003914!8.45e-12!118;UBERON:0000991!2.37e-11!21;UBERON:0009196!2.37e-11!21;UBERON:0009117!2.37e-11!21;UBERON:0005564!2.37e-11!21;UBERON:0004176!8.55e-11!22;UBERON:0001529!9.65e-11!2;UBERON:0007204!9.65e-11!2;UBERON:0002118!4.00e-10!5;UBERON:0004532!4.00e-10!5;UBERON:0000055!4.98e-10!69;UBERON:0000948!5.61e-10!24;UBERON:0005498!5.61e-10!24;UBERON:0004140!5.61e-10!24;UBERON:0009881!5.61e-10!24;UBERON:0004141!5.61e-10!24;UBERON:0003084!5.61e-10!24;UBERON:0007005!5.61e-10!24;UBERON:0004139!5.61e-10!24;UBERON:0004291!5.61e-10!24;UBERON:0001134!1.08e-09!61;UBERON:0002036!1.08e-09!61;UBERON:0003082!1.08e-09!61;UBERON:0004290!1.11e-09!70;UBERON:0002385!2.59e-09!63;UBERON:0001015!2.59e-09!63;UBERON:0000383!2.59e-09!63;UBERON:0004237!7.91e-09!10;UBERON:0004695!7.91e-09!10;UBERON:0002111!7.91e-09!10;UBERON:0004178!7.91e-09!10;UBERON:0007100!9.16e-09!27;UBERON:0000947!9.65e-09!21;UBERON:0010191!9.65e-09!21;UBERON:0002049!1.97e-08!79;UBERON:0007798!1.97e-08!79;UBERON:0000486!6.86e-08!82;UBERON:0000914!9.16e-08!83;UBERON:0002329!9.16e-08!83;UBERON:0003077!9.16e-08!83;UBERON:0003059!9.16e-08!83;UBERON:0007282!9.16e-08!83;UBERON:0009618!9.16e-08!83;UBERON:0007285!9.16e-08!83;UBERON:0003134!9.34e-08!37;UBERON:0000474!9.34e-08!37;UBERON:0003100!6.96e-07!41|ontology_enrichment_uberon_v019=UBERON:0000948;1.59e-18;22!UBERON:0007100;2.29e-16;25!UBERON:0000947;2.85e-11;21!UBERON:0010191;2.85e-11;21!UBERON:0004237;7.29e-11;10!UBERON:0004695;7.29e-11;10!UBERON:0002111;7.29e-11;10!UBERON:0004178;7.29e-11;10!UBERON:0004573;1.07e-07;33!UBERON:0004571;1.07e-07;33!UBERON:0001135;1.49e-07;15!UBERON:0004797;1.75e-07;4!UBERON:0000415;1.75e-07;4!UBERON:0007240;1.75e-07;4!UBERON:0005742;1.75e-07;4!UBERON:0005734;1.75e-07;4!UBERON:0004664;1.75e-07;4!UBERON:0004663;1.75e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000948,5.92e-17,24;UBERON:0005498,5.92e-17,24;UBERON:0004140,5.92e-17,24;UBERON:0009881,5.92e-17,24;UBERON:0004141,5.92e-17,24;UBERON:0003084,5.92e-17,24;UBERON:0007005,5.92e-17,24;UBERON:0004139,5.92e-17,24;UBERON:0004291,5.92e-17,24;UBERON:0007100,3.96e-15,27;UBERON:0004872,1.16e-14,83;UBERON:0000947,2.43e-11,21;UBERON:0010191,2.43e-11,21;UBERON:0004535,3.60e-11,109;UBERON:0004237,5.98e-11,10;UBERON:0004695,5.98e-11,10;UBERON:0002111,5.98e-11,10;UBERON:0004178,5.98e-11,10;UBERON:0001009,7.18e-11,112;UBERON:0003914,2.10e-10,117;UBERON:0001135,1.31e-07,15;UBERON:0000415,1.69e-07,4;UBERON:0007240,1.69e-07,4;UBERON:0005742,1.69e-07,4;UBERON:0005734,1.69e-07,4;UBERON:0004664,1.69e-07,4;UBERON:0004663,1.69e-07,4;UBERON:0004573,1.90e-07,33;UBERON:0004571,1.90e-07,33|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19168262731897,0.573673241497627,0,0,1.06748995729705,0,0,0,0.163461903113459,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3373 | |||
|description=CAGE_peak_at_chr9:118454273..118454278,+ | |||
|id=chr9:118454273..118454278,+ | |||
|ontology_enrichment_celltype=CL:0000569!2.61e-22!4;CL:0000011!2.61e-22!4;CL:0000359!2.27e-17!32;CL:0002494!1.96e-15!16;CL:0000192!9.95e-13!42;CL:0000514!9.95e-13!42;CL:0000187!2.96e-11!54;CL:0002589!9.65e-11!2;CL:0000680!1.54e-10!57;CL:0000056!1.54e-10!57;CL:0000355!1.54e-10!57;CL:0000048!1.88e-10!430;CL:0000723!3.29e-10!436;CL:0000183!4.21e-10!59;CL:0000393!6.79e-10!60;CL:0000211!6.79e-10!60;CL:0000034!6.80e-10!444;CL:0002539!7.91e-09!10;CL:0002582!5.41e-08!3;CL:0000055!7.69e-08!180 | |||
|ontology_enrichment_celltype_v019=CL:0000569;2.37e-56;4!CL:0002494;2.97e-25;16!CL:0002539;7.29e-11;10!CL:1000306;1.75e-07;4!CL:0002547;1.75e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,3.14e-56,4;CL:0000011,3.14e-56,4;CL:0002494,3.81e-25,16;CL:0002539,5.98e-11,10;CL:1000306,1.69e-07,4;CL:0002547,1.69e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000011;2.37e-56;4 | |||
|ontology_enrichment_disease=DOID:2394!8.04e-23!14;DOID:120!4.58e-14!27;DOID:193!5.45e-13!29 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002119!4.51e-21!4;UBERON:0004531!4.51e-21!4;UBERON:0000992!6.72e-19!13;UBERON:0004872!2.78e-18!84;UBERON:0001637!3.37e-18!42;UBERON:0003509!3.37e-18!42;UBERON:0004572!3.37e-18!42;UBERON:0004573!5.25e-17!33;UBERON:0004571!5.25e-17!33;UBERON:0004535!5.82e-13!110;UBERON:0001009!1.66e-12!113;UBERON:0001981!6.26e-12!60;UBERON:0007500!6.26e-12!60;UBERON:0004537!6.26e-12!60;UBERON:0006965!6.26e-12!60;UBERON:0003914!8.45e-12!118;UBERON:0000991!2.37e-11!21;UBERON:0009196!2.37e-11!21;UBERON:0009117!2.37e-11!21;UBERON:0005564!2.37e-11!21;UBERON:0004176!8.55e-11!22;UBERON:0001529!9.65e-11!2;UBERON:0007204!9.65e-11!2;UBERON:0002118!4.00e-10!5;UBERON:0004532!4.00e-10!5;UBERON:0000055!4.98e-10!69;UBERON:0000948!5.61e-10!24;UBERON:0005498!5.61e-10!24;UBERON:0004140!5.61e-10!24;UBERON:0009881!5.61e-10!24;UBERON:0004141!5.61e-10!24;UBERON:0003084!5.61e-10!24;UBERON:0007005!5.61e-10!24;UBERON:0004139!5.61e-10!24;UBERON:0004291!5.61e-10!24;UBERON:0001134!1.08e-09!61;UBERON:0002036!1.08e-09!61;UBERON:0003082!1.08e-09!61;UBERON:0004290!1.11e-09!70;UBERON:0002385!2.59e-09!63;UBERON:0001015!2.59e-09!63;UBERON:0000383!2.59e-09!63;UBERON:0004237!7.91e-09!10;UBERON:0004695!7.91e-09!10;UBERON:0002111!7.91e-09!10;UBERON:0004178!7.91e-09!10;UBERON:0007100!9.16e-09!27;UBERON:0000947!9.65e-09!21;UBERON:0010191!9.65e-09!21;UBERON:0002049!1.97e-08!79;UBERON:0007798!1.97e-08!79;UBERON:0000486!6.86e-08!82;UBERON:0000914!9.16e-08!83;UBERON:0002329!9.16e-08!83;UBERON:0003077!9.16e-08!83;UBERON:0003059!9.16e-08!83;UBERON:0007282!9.16e-08!83;UBERON:0009618!9.16e-08!83;UBERON:0007285!9.16e-08!83;UBERON:0003134!9.34e-08!37;UBERON:0000474!9.34e-08!37;UBERON:0003100!6.96e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;1.59e-18;22!UBERON:0007100;2.29e-16;25!UBERON:0000947;2.85e-11;21!UBERON:0010191;2.85e-11;21!UBERON:0004237;7.29e-11;10!UBERON:0004695;7.29e-11;10!UBERON:0002111;7.29e-11;10!UBERON:0004178;7.29e-11;10!UBERON:0004573;1.07e-07;33!UBERON:0004571;1.07e-07;33!UBERON:0001135;1.49e-07;15!UBERON:0004797;1.75e-07;4!UBERON:0000415;1.75e-07;4!UBERON:0007240;1.75e-07;4!UBERON:0005742;1.75e-07;4!UBERON:0005734;1.75e-07;4!UBERON:0004664;1.75e-07;4!UBERON:0004663;1.75e-07;4 | |||
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|short_description=p@chr9:118454273..118454278,+ | |||
}} |
Revision as of 07:10, 14 September 2013
Short description: | p@chr9:118454273..118454278, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:118454273..118454278, + |
Coexpression cluster: | C3373_mesenchymal_Fibroblast_normal_Smooth_mucinous_Preadipocyte_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 3.14e-56 | 4 |
migratory trunk neural crest cell | 3.14e-56 | 4 |
cardiocyte | 3.81e-25 | 16 |
aortic smooth muscle cell | 5.98e-11 | 10 |
fibroblast of tunica adventitia of artery | 1.69e-07 | 4 |
fibroblast of the aortic adventitia | 1.69e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
heart | 5.92e-17 | 24 |
primitive heart tube | 5.92e-17 | 24 |
primary heart field | 5.92e-17 | 24 |
anterior lateral plate mesoderm | 5.92e-17 | 24 |
heart tube | 5.92e-17 | 24 |
heart primordium | 5.92e-17 | 24 |
cardiac mesoderm | 5.92e-17 | 24 |
cardiogenic plate | 5.92e-17 | 24 |
heart rudiment | 5.92e-17 | 24 |
primary circulatory organ | 3.96e-15 | 27 |
splanchnic layer of lateral plate mesoderm | 1.16e-14 | 83 |
aorta | 2.43e-11 | 21 |
aortic system | 2.43e-11 | 21 |
cardiovascular system | 3.60e-11 | 109 |
blood vessel smooth muscle | 5.98e-11 | 10 |
arterial system smooth muscle | 5.98e-11 | 10 |
artery smooth muscle tissue | 5.98e-11 | 10 |
aorta smooth muscle tissue | 5.98e-11 | 10 |
circulatory system | 7.18e-11 | 112 |
epithelial tube | 2.10e-10 | 117 |
smooth muscle tissue | 1.31e-07 | 15 |
artery wall | 1.69e-07 | 4 |
tunica adventitia of artery | 1.69e-07 | 4 |
adventitia | 1.69e-07 | 4 |
tunica adventitia of blood vessel | 1.69e-07 | 4 |
aorta tunica adventitia | 1.69e-07 | 4 |
aorta wall | 1.69e-07 | 4 |
systemic artery | 1.90e-07 | 33 |
systemic arterial system | 1.90e-07 | 33 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.