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MCL coexpression mm9:128: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!7.26e-48!22;UBERON:0007499!7.26e-48!22;UBERON:0006925!7.26e-48!22;UBERON:0009497!7.26e-48!22;UBERON:0000015!7.26e-48!22;UBERON:0002423!7.26e-48!22;UBERON:0006235!7.26e-48!22;UBERON:0008835!7.26e-48!22;UBERON:0003894!7.26e-48!22;UBERON:0004161!7.26e-48!22;UBERON:0008836!7.26e-48!22;UBERON:0009854!1.02e-45!23;UBERON:0009856!1.02e-45!23;UBERON:0002365!6.11e-42!25;UBERON:0002330!6.11e-42!25;UBERON:0005256!1.38e-22!45;UBERON:0003914!1.49e-21!47;UBERON:0005172!1.32e-20!49;UBERON:0005173!1.32e-20!49;UBERON:0002417!1.32e-20!49;UBERON:0000916!1.32e-20!49;UBERON:0003929!3.60e-18!55;UBERON:0002368!1.64e-16!60;UBERON:0003104!3.27e-16!61;UBERON:0009142!3.27e-16!61;UBERON:0002530!4.18e-15!65;UBERON:0000490!7.54e-15!66;UBERON:0009569!7.54e-15!66;UBERON:0005911!3.99e-14!69;UBERON:0000949!1.84e-13!72;UBERON:0000466!4.16e-12!79;UBERON:0005177!4.16e-12!79;UBERON:0001041!6.21e-12!80;UBERON:0002100!2.12e-10!90;UBERON:0000025!8.33e-08!114;UBERON:0004921!8.33e-08!114;UBERON:0001007!1.23e-07!116;UBERON:0001555!1.23e-07!116;UBERON:0007026!1.23e-07!116;UBERON:0004119!1.79e-07!118;UBERON:0000925!1.79e-07!118;UBERON:0006595!1.79e-07!118;UBERON:0004111!3.65e-07!122
|tfbs_overrepresentation_for_novel_motifs=0.00785293,0.000182828,0.019944,0.785764,0.247272,0.607198,0.256954,0.204265,0.0621971,9.68729e-06,0.08653,0.415885,0.0130093,0.0491457,1.49541,0,0.175266,0.806936,0.0182601,0.182468,2.88813,0.267546,0.048763,1.57759,0.221039,0.0617243,0.275889,0.0681829,0.00641767,0.047722,0.0184653,0.274984,0.00659858,0.0539412,0.0302948,0.000156438,2.45812e-05,0.0381848,0.942029,0.0042215,0.835182,0.0624707,0.3263,2.12237,0.0027946,0.0122236,0.271948,0.174871,0.235466,0.050074,0.160264,0.195051,0.0637393,0.145596,0.154951,0.0522415,1.92855,0.0349728,0.110722,0.0513459,0.0726764,0.0810742,0.0443391,0.0383998,0.0573006,0.0495551,0.236767,0.50034,0.0709596,0.381663,0.00372426,1.28226,9.97899e-07,0.993232,2.54479e-06,0.00245722,0.0538408,0.256107,0.871651,0.146803,0.0995269,0.0512351,2.73535,0.121337,0.113496,1.41564e-11,1.59588,0.00734818,0.115912,0.640199,0.283929,0.115838,4.10034,2.62098,9.96454e-06,1.62795,0.380597,0.292198,0.0268199,0.100285,0.555712,0.27468,0.136524,0.160764,0.0412088,0.00324976,0.0589493,0.0248117,0.0369134,0.00275354,0.571573,0.137439,0.979933,0.0905152,0.288874,0.822193,5.7651e-06,0.223904,0.176411,0.183029,1.59506,0.134402,1.99417,0.104128,0.874385,0.239629,0.270742,0.0826653,0.235778,0.0099976,0.401987,0.104974,0.21683,0.156947,0.821308,2.04923,0.871396,0.27002,0.269707,0.979877,0.612119,0.673892,1.2355,0.286477,0.154494,0.0197372,0.513122,0.942288,1.46743,0.000484797,0.000474808,2.72871e-10,0.880195,0.000473708,1.13217,0.1926,0.19626,0.0764133,1.07408,0.00886564,0.276264,0.363457,0.515735,0.562414,0.629737,0.299855,0.117593,0.111412,2.2427e-07
}}

Latest revision as of 14:44, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127321403..127321407,-p@chr10:127321403..127321407
-
Mm9::chr10:24635877..24635888,-p@chr10:24635877..24635888
-
Mm9::chr10:87355159..87355161,+p@chr10:87355159..87355161
+
Mm9::chr11:116035786..116035800,-p@chr11:116035786..116035800
-
Mm9::chr11:120353854..120353865,-p1@ENSMUST00000142520
Mm9::chr11:16678149..16678151,+p@chr11:16678149..16678151
+
Mm9::chr11:16678603..16678615,+p@chr11:16678603..16678615
+
Mm9::chr11:16746327..16746330,+p@chr11:16746327..16746330
+
Mm9::chr11:60036258..60036276,-p3@Srebf1
Mm9::chr12:105002005..105002050,-p@chr12:105002005..105002050
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Mm9::chr12:105003025..105003036,-p@chr12:105003025..105003036
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Mm9::chr12:105006094..105006117,-p@chr12:105006094..105006117
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Mm9::chr12:105135274..105135305,-p@chr12:105135274..105135305
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Mm9::chr12:105189466..105189477,-p@chr12:105189466..105189477
-
Mm9::chr12:105583523..105583538,+p@chr12:105583523..105583538
+
Mm9::chr12:105583554..105583564,+p@chr12:105583554..105583564
+
Mm9::chr12:105583571..105583582,+p@chr12:105583571..105583582
+
Mm9::chr12:105583621..105583627,+p@chr12:105583621..105583627
+
Mm9::chr14:41927501..41927512,+p@chr14:41927501..41927512
+
Mm9::chr16:16560464..16560475,-p17@Fgd4
Mm9::chr17:84536537..84536547,-p@chr17:84536537..84536547
-
Mm9::chr19:39303752..39303756,+p1@Cyp2c53-ps
Mm9::chr19:39361578..39361594,+p1@Cyp2c29
Mm9::chr19:39365241..39365270,+p@chr19:39365241..39365270
+
Mm9::chr19:39365321..39365337,+p@chr19:39365321..39365337
+
Mm9::chr19:39374556..39374560,+p@chr19:39374556..39374560
+
Mm9::chr19:39382098..39382114,+p@chr19:39382098..39382114
+
Mm9::chr19:39382184..39382199,+p@chr19:39382184..39382199
+
Mm9::chr19:39384135..39384157,+p@chr19:39384135..39384157
+
Mm9::chr19:39384266..39384278,+p@chr19:39384266..39384278
+
Mm9::chr19:39389970..39389978,+p@chr19:39389970..39389978
+
Mm9::chr19:39390004..39390011,+p@chr19:39390004..39390011
+
Mm9::chr19:39390029..39390037,+p@chr19:39390029..39390037
+
Mm9::chr19:39399423..39399432,+p@chr19:39399423..39399432
+
Mm9::chr19:39399495..39399528,+p@chr19:39399495..39399528
+
Mm9::chr19:39403641..39403676,+p@chr19:39403641..39403676
+
Mm9::chr19:39404877..39404882,+p@chr19:39404877..39404882
+
Mm9::chr19:40188154..40188166,+p@chr19:40188154..40188166
+
Mm9::chr19:40232386..40232425,-p@chr19:40232386..40232425
-
Mm9::chr19:40233958..40233962,-p@chr19:40233958..40233962
-
Mm9::chr19:40237604..40237608,-p@chr19:40237604..40237608
-
Mm9::chr19:40248162..40248172,-p@chr19:40248162..40248172
-
Mm9::chr19:40254883..40254895,-p@chr19:40254883..40254895
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Mm9::chr19:44469333..44469347,-p@chr19:44469333..44469347
-
Mm9::chr1:133866485..133866489,+p@chr1:133866485..133866489
+
Mm9::chr1:173155793..173155841,+p@chr1:173155793..173155841
+
Mm9::chr1:173156291..173156313,+p@chr1:173156291..173156313
+
Mm9::chr1:21290067..21290086,-p@chr1:21290067..21290086
-
Mm9::chr1:36162547..36162577,+p@chr1:36162547..36162577
+
Mm9::chr1:67200081..67200086,+p@chr1:67200081..67200086
+
Mm9::chr1:67214884..67214893,+p@chr1:67214884..67214893
+
Mm9::chr1:67221081..67221092,+p@chr1:67221081..67221092
+
Mm9::chr1:67221240..67221249,+p@chr1:67221240..67221249
+
Mm9::chr1:67276977..67276999,+p1@uc007biz.1
Mm9::chr1:67277184..67277202,+p2@uc007biz.1
Mm9::chr1:99956884..99956886,+p@chr1:99956884..99956886
+
Mm9::chr2:103294557..103294580,-p@chr2:103294557..103294580
-
Mm9::chr2:103294606..103294623,-p@chr2:103294606..103294623
-
Mm9::chr2:103294672..103294691,-p@chr2:103294672..103294691
-
Mm9::chr2:172984520..172984544,+p@chr2:172984520..172984544
+
Mm9::chr2:72018279..72018285,+p@chr2:72018279..72018285
+
Mm9::chr2:72018496..72018514,+p@chr2:72018496..72018514
+
Mm9::chr2:72043702..72043703,+p@chr2:72043702..72043703
+
Mm9::chr3:100589647..100589679,+p@chr3:100589647..100589679
+
Mm9::chr3:107815588..107815627,-p@chr3:107815588..107815627
-
Mm9::chr3:82849892..82849895,-p@chr3:82849892..82849895
-
Mm9::chr4:115159672..115159722,-p@chr4:115159672..115159722
-
Mm9::chr4:49549504..49549515,-p@chr4:49549504..49549515
-
Mm9::chr4:49549517..49549528,-p@chr4:49549517..49549528
-
Mm9::chr4:59973531..59973540,-p1@Mup4
Mm9::chr5:146680566..146680591,-p@chr5:146680566..146680591
-
Mm9::chr5:146685077..146685108,-p@chr5:146685077..146685108
-
Mm9::chr5:87346055..87346060,-p@chr5:87346055..87346060
-
Mm9::chr5:87766144..87766156,-p@chr5:87766144..87766156
-
Mm9::chr5:90890774..90890801,-p@chr5:90890774..90890801
-
Mm9::chr5:90894978..90894996,-p@chr5:90894978..90894996
-
Mm9::chr5:90904290..90904338,+p@chr5:90904290..90904338
+
Mm9::chr6:113433578..113433612,+p3@Creld1
Mm9::chr6:85815802..85815804,-p@chr6:85815802..85815804
-
Mm9::chr7:104562106..104562111,-p@chr7:104562106..104562111
-
Mm9::chr7:147955971..147955981,+p@chr7:147955971..147955981
+
Mm9::chr7:27918263..27918287,+p@chr7:27918263..27918287
+
Mm9::chr7:74805802..74805809,+p@chr7:74805802..74805809
+
Mm9::chr8:112517816..112517828,+p@chr8:112517816..112517828
+
Mm9::chr8:112522826..112522841,+p@chr8:112522826..112522841
+
Mm9::chr8:36478444..36478478,-p@chr8:36478444..36478478
-
Mm9::chr8:42002936..42002947,+p@chr8:42002936..42002947
+
Mm9::chr8:95645482..95645485,-p@chr8:95645482..95645485
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Mm9::chr8:95647096..95647110,-p@chr8:95647096..95647110
-
Mm9::chr9:46038153..46038162,-p@chr9:46038153..46038162
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Mm9::chr9:46041332..46041361,-p@chr9:46041332..46041361
-
Mm9::chrM:5928..5943,-p@chrM:5928..5943
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell4.01e-195
endopolyploid cell4.01e-195
parenchymal cell4.01e-195
polyploid cell4.01e-195
hepatocyte4.01e-195
fibroblast5.34e-071
hepatic stellate cell5.34e-071

Uber Anatomy
Ontology termp-valuen
liver7.26e-4822
epithelial sac7.26e-4822
digestive gland7.26e-4822
epithelium of foregut-midgut junction7.26e-4822
anatomical boundary7.26e-4822
hepatobiliary system7.26e-4822
foregut-midgut junction7.26e-4822
hepatic diverticulum7.26e-4822
liver primordium7.26e-4822
septum transversum7.26e-4822
liver bud7.26e-4822
digestive tract diverticulum1.02e-4523
sac1.02e-4523
exocrine gland6.11e-4225
exocrine system6.11e-4225
trunk mesenchyme1.38e-2245
epithelial tube1.49e-2147
abdomen element1.32e-2049
abdominal segment element1.32e-2049
abdominal segment of trunk1.32e-2049
abdomen1.32e-2049
gut epithelium3.60e-1855
endocrine gland1.64e-1660
mesenchyme3.27e-1661
entire embryonic mesenchyme3.27e-1661
gland4.18e-1565
unilaminar epithelium7.54e-1566
subdivision of trunk7.54e-1566
endo-epithelium3.99e-1469
endocrine system1.84e-1372
immaterial anatomical entity4.16e-1279
trunk region element4.16e-1279
foregut6.21e-1280
trunk2.12e-1090
tube8.33e-08114
subdivision of digestive tract8.33e-08114
digestive system1.23e-07116
digestive tract1.23e-07116
primitive gut1.23e-07116
endoderm-derived structure1.79e-07118
endoderm1.79e-07118
presumptive endoderm1.79e-07118
anatomical conduit3.65e-07122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.82164e-17
MA0004.10.113105
MA0006.10.00317852
MA0007.10.0116823
MA0009.10.0909799
MA0014.19.24163e-13
MA0017.10.531895
MA0019.10.130671
MA0024.10.0736778
MA0025.10.213997
MA0027.11.46375
MA0028.10.000831391
MA0029.13.01294
MA0030.10.516778
MA0031.10.787087
MA0038.10.0616857
MA0040.10.0962878
MA0041.10.313519
MA0042.10.422243
MA0043.10.13601
MA0046.10.346447
MA0048.10.00319297
MA0050.10.474773
MA0051.10.066152
MA0052.10.672954
MA0055.10.147834
MA0056.10
MA0057.10.000713066
MA0058.10.0373399
MA0059.10.292727
MA0060.10.00138764
MA0061.10.147441
MA0063.10
MA0066.10.152365
MA0067.10.287978
MA0068.10.0540227
MA0069.10.328603
MA0070.11.60515
MA0071.10.699565
MA0072.10.307537
MA0073.19.30865e-13
MA0074.10.117246
MA0076.10.0002147
MA0077.10.999086
MA0078.10.410425
MA0081.10.0225138
MA0083.10.135604
MA0084.10.545913
MA0087.10.740414
MA0088.13.4813e-06
MA0089.10
MA0090.10.280208
MA0091.10.0547598
MA0092.10.439457
MA0093.10.0382246
MA0095.10
MA0098.10
MA0100.10.10702
MA0101.10.474907
MA0103.10.178297
MA0105.10.00273269
MA0106.10.020093
MA0107.10.165917
MA0108.20.619708
MA0109.10
MA0111.10.0928583
MA0113.10.368944
MA0114.10.219684
MA0115.10.841817
MA0116.10.0593599
MA0117.10.384923
MA0119.10.0185129
MA0122.10.131129
MA0124.12.00227
MA0125.10.203942
MA0130.10
MA0131.10.0311443
MA0132.10
MA0133.10
MA0135.12.82002
MA0136.10.0493599
MA0139.10.0244872
MA0140.10.22659
MA0141.11.15068
MA0142.10.426749
MA0143.10.401991
MA0144.10.149118
MA0145.10.00165265
MA0146.15.05869e-07
MA0147.10.00463103
MA0148.10.615571
MA0149.10.0198996
MA0062.22.1501e-06
MA0035.20.410883
MA0039.20
MA0138.20.0294053
MA0002.20.200947
MA0137.20.00949608
MA0104.20.000195697
MA0047.21.16456
MA0112.29.30933e-05
MA0065.20.00716067
MA0150.10.191842
MA0151.10
MA0152.10.830747
MA0153.10.164424
MA0154.10.0640005
MA0155.19.52668e-07
MA0156.10.00801433
MA0157.10.665429
MA0158.10
MA0159.10.128002
MA0160.10.253811
MA0161.10
MA0162.11.32276e-10
MA0163.12.63992e-08
MA0164.10.0495141
MA0080.20.00138044
MA0018.20.0537554
MA0099.20.116926
MA0079.20
MA0102.20.591117
MA0258.10.0354415
MA0259.10.0103392
MA0442.10
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