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MCL coexpression mm9:354: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000475!1.27e-09!150;UBERON:0005423!2.52e-09!304;UBERON:0000467!3.30e-09!308;UBERON:0000480!3.30e-09!308;UBERON:0000468!4.51e-09!333;UBERON:0005172!2.97e-08!49;UBERON:0005173!2.97e-08!49;UBERON:0002417!2.97e-08!49;UBERON:0000916!2.97e-08!49;UBERON:0001048!6.16e-08!134;UBERON:0002100!6.23e-08!90;UBERON:0002050!6.63e-08!294;UBERON:0000466!1.14e-07!79;UBERON:0000923!1.99e-07!291;UBERON:0010316!1.99e-07!291;UBERON:0005291!1.99e-07!291;UBERON:0006598!1.99e-07!291;UBERON:0010317!1.99e-07!291;UBERON:0002532!1.99e-07!291;UBERON:0005177!2.32e-07!79;UBERON:0002530!5.08e-07!65;UBERON:0005256!6.81e-07!45;UBERON:0009569!9.70e-07!66
|tfbs_overrepresentation_for_novel_motifs=0.119369,0.470303,0.341317,0.872368,0.425918,0.466956,0.214952,0.229454,0.465626,0.0552943,0.542448,0.595264,0.22989,0.636202,0.463829,0,0.374352,0.0483719,0.202974,0.305467,0.0854539,0.495413,0.223092,0.741837,0.352326,0.243873,1.68014,0.167184,0.248458,0.25504,0.477864,0.460285,0.179513,0.533664,0.0584536,0.0889343,0.0440547,0.589223,0.953153,0.115421,1.12618,0.486105,0.872044,0.468447,0.188645,0.137727,0.833552,0.52593,1.21544,0.537972,0.359925,0.264025,0.649685,0.586014,0.601849,0.648355,0.264175,0.197526,0.866154,0.227439,0.442975,0.271204,0.502154,0.350689,0.237053,0.384144,0.727642,1.06142,0.438956,0.919268,0.0946191,0.454788,0.106527,0.632466,0.0612875,0.504764,0.315175,0.300684,0.428247,0.295115,1.48887,0.388829,0.270104,0.0864064,0.5282,0.00663602,0.48007,0.255395,0.313544,1.21975,0.793151,0.532634,0.471416,1.17301,0.0351424,0.53819,0.0897681,0.473864,0.309859,0.364782,0.168895,0.460042,1.39854,0.360414,0.359547,0.161095,0.409409,0.519389,0.0900536,0.0863521,0.369309,0.57187,0.0881503,0.187937,0.799811,1.11778,0.0379494,0.450125,0.375433,0.374781,0.637418,0.333667,0.686386,0.299972,0.851175,0.43141,0.62924,0.465518,1.7244,0.0550287,0.554981,0.85315,0.698665,0.238902,0.820264,0.0378838,0.78425,0.488358,0.773792,1.58317,1.18855,0.732048,0.707182,0.469382,0.35423,0.161672,0.31213,1.54387,0.396035,0.0521541,0.452641,0.00126457,0.587436,0.30395,0.238221,0.662158,0.264789,0.226926,0.756205,0.392046,0.782756,0.527439,1.10281,0.11405,0.351524,0.232792,1.48682,0.592611,0.126659
|tfbs_overrepresentation_jaspar=MA0003.1;0.00246128,MA0004.1;0.873644,MA0006.1;0.0564154,MA0007.1;0.421767,MA0009.1;1.21381,MA0014.1;0.0349653,MA0017.1;0.515383,MA0019.1;0.329708,MA0024.1;0.445298,MA0025.1;0.694475,MA0027.1;2.07936,MA0028.1;0.0607913,MA0029.1;0.426655,MA0030.1;1.10385,MA0031.1;0.402033,MA0038.1;0.243815,MA0040.1;0.494317,MA0041.1;1.12403,MA0042.1;1.07583,MA0043.1;0.569356,MA0046.1;0.514989,MA0048.1;0.206983,MA0050.1;0.506524,MA0051.1;0.250459,MA0052.1;0.501416,MA0055.1;0.83588,MA0056.1;0,MA0057.1;0.0270577,MA0058.1;0.628633,MA0059.1;1.61567,MA0060.1;0.117373,MA0061.1;0.618873,MA0063.1;0,MA0066.1;0.235725,MA0067.1;0.798606,MA0068.1;0.00518327,MA0069.1;0.501715,MA0070.1;0.493176,MA0071.1;0.974672,MA0072.1;0.485733,MA0073.1;0.00490853,MA0074.1;0.209912,MA0076.1;0.0767377,MA0077.1;0.466808,MA0078.1;0.275441,MA0081.1;0.353705,MA0083.1;0.568641,MA0084.1;1.11388,MA0087.1;0.530004,MA0088.1;0.512673,MA0089.1;0,MA0090.1;0.392445,MA0091.1;0.908402,MA0092.1;0.124428,MA0093.1;0.854934,MA0095.1;0,MA0098.1;0,MA0100.1;0.201797,MA0101.1;1.12877,MA0103.1;0.54098,MA0105.1;0.150071,MA0106.1;0.281418,MA0107.1;1.3518,MA0108.2;0.348212,MA0109.1;0,MA0111.1;0.132626,MA0113.1;0.720329,MA0114.1;0.338149,MA0115.1;0.571881,MA0116.1;0.206147,MA0117.1;0.542889,MA0119.1;0.333984,MA0122.1;0.560692,MA0124.1;0.748494,MA0125.1;0.67944,MA0130.1;0,MA0131.1;0.326061,MA0132.1;0,MA0133.1;0,MA0135.1;0.602346,MA0136.1;0.637057,MA0139.1;0.222381,MA0140.1;0.201717,MA0141.1;0.280405,MA0142.1;0.389844,MA0143.1;0.27232,MA0144.1;0.149023,MA0145.1;1.3866,MA0146.1;0.171485,MA0147.1;0.662138,MA0148.1;0.155077,MA0149.1;0.104621,MA0062.2;0.0591193,MA0035.2;1.11804,MA0039.2;0.000115509,MA0138.2;0.319705,MA0002.2;0.0910543,MA0137.2;0.276466,MA0104.2;0.477699,MA0047.2;0.243248,MA0112.2;0.564575,MA0065.2;0.116416,MA0150.1;0.135628,MA0151.1;0,MA0152.1;0.68198,MA0153.1;0.617506,MA0154.1;0.360977,MA0155.1;0.267894,MA0156.1;0.263883,MA0157.1;0.363212,MA0158.1;0,MA0159.1;1.0751,MA0160.1;0.475244,MA0161.1;0,MA0162.1;0.00444313,MA0163.1;0.295476,MA0164.1;0.637671,MA0080.2;0.0703895,MA0018.2;0.231394,MA0099.2;0.314682,MA0079.2;3.96448e-06,MA0102.2;1.16504,MA0258.1;0.895773,MA0259.1;0.150732,MA0442.1;0
}}

Latest revision as of 15:09, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:120346652..120346668,+p3@Mrpl12
Mm9::chr11:52059689..52059710,+p@chr11:52059689..52059710
+
Mm9::chr12:84983583..84983625,+p2@Rbm25
Mm9::chr14:54988045..54988063,+p@chr14:54988045..54988063
+
Mm9::chr14:56282288..56282298,-p@chr14:56282288..56282298
-
Mm9::chr16:4769673..4769691,-p@chr16:4769673..4769691
-
Mm9::chr17:34754140..34754174,-p@chr17:34754140..34754174
-
Mm9::chr19:32748344..32748356,-p@chr19:32748344..32748356
-
Mm9::chr19:3521798..3521819,-p@chr19:3521798..3521819
-
Mm9::chr1:172128898..172128922,-p@chr1:172128898..172128922
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Mm9::chr1:36759003..36759030,-p@chr1:36759003..36759030
-
Mm9::chr2:152607677..152607702,-p@chr2:152607677..152607702
-
Mm9::chr2:155075707..155075737,+p@chr2:155075707..155075737
+
Mm9::chr5:140250339..140250363,-p@chr5:140250339..140250363
-
Mm9::chr6:113330707..113330741,+p@chr6:113330707..113330741
+
Mm9::chr7:133304506..133304527,-p5@Xpo6
Mm9::chr7:16702068..16702089,+p@chr7:16702068..16702089
+
Mm9::chr8:122465924..122465957,+p@chr8:122465924..122465957
+
Mm9::chr8:73055417..73055445,+p6@Fkbp8
Mm9::chr9:36587621..36587640,-p@chr9:36587621..36587640
-
Mm9::chr9:45760942..45760967,-p@chr9:45760942..45760967
-
Mm9::chrX:71500602..71500616,+p@chrX:71500602..71500616
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00246128
MA0004.10.873644
MA0006.10.0564154
MA0007.10.421767
MA0009.11.21381
MA0014.10.0349653
MA0017.10.515383
MA0019.10.329708
MA0024.10.445298
MA0025.10.694475
MA0027.12.07936
MA0028.10.0607913
MA0029.10.426655
MA0030.11.10385
MA0031.10.402033
MA0038.10.243815
MA0040.10.494317
MA0041.11.12403
MA0042.11.07583
MA0043.10.569356
MA0046.10.514989
MA0048.10.206983
MA0050.10.506524
MA0051.10.250459
MA0052.10.501416
MA0055.10.83588
MA0056.10
MA0057.10.0270577
MA0058.10.628633
MA0059.11.61567
MA0060.10.117373
MA0061.10.618873
MA0063.10
MA0066.10.235725
MA0067.10.798606
MA0068.10.00518327
MA0069.10.501715
MA0070.10.493176
MA0071.10.974672
MA0072.10.485733
MA0073.10.00490853
MA0074.10.209912
MA0076.10.0767377
MA0077.10.466808
MA0078.10.275441
MA0081.10.353705
MA0083.10.568641
MA0084.11.11388
MA0087.10.530004
MA0088.10.512673
MA0089.10
MA0090.10.392445
MA0091.10.908402
MA0092.10.124428
MA0093.10.854934
MA0095.10
MA0098.10
MA0100.10.201797
MA0101.11.12877
MA0103.10.54098
MA0105.10.150071
MA0106.10.281418
MA0107.11.3518
MA0108.20.348212
MA0109.10
MA0111.10.132626
MA0113.10.720329
MA0114.10.338149
MA0115.10.571881
MA0116.10.206147
MA0117.10.542889
MA0119.10.333984
MA0122.10.560692
MA0124.10.748494
MA0125.10.67944
MA0130.10
MA0131.10.326061
MA0132.10
MA0133.10
MA0135.10.602346
MA0136.10.637057
MA0139.10.222381
MA0140.10.201717
MA0141.10.280405
MA0142.10.389844
MA0143.10.27232
MA0144.10.149023
MA0145.11.3866
MA0146.10.171485
MA0147.10.662138
MA0148.10.155077
MA0149.10.104621
MA0062.20.0591193
MA0035.21.11804
MA0039.20.000115509
MA0138.20.319705
MA0002.20.0910543
MA0137.20.276466
MA0104.20.477699
MA0047.20.243248
MA0112.20.564575
MA0065.20.116416
MA0150.10.135628
MA0151.10
MA0152.10.68198
MA0153.10.617506
MA0154.10.360977
MA0155.10.267894
MA0156.10.263883
MA0157.10.363212
MA0158.10
MA0159.11.0751
MA0160.10.475244
MA0161.10
MA0162.10.00444313
MA0163.10.295476
MA0164.10.637671
MA0080.20.0703895
MA0018.20.231394
MA0099.20.314682
MA0079.23.96448e-06
MA0102.21.16504
MA0258.10.895773
MA0259.10.150732
MA0442.10
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