FFCP PHASE1:Hg19::chr14:64680854..64680891,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23224 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17084 | |||
|TSSclassifier=strong | |||
|UniProt=G3V2Q0,Q8WXH0 | |||
|association_with_transcript=0bp_to_ENST00000458046,ENST00000557084,NM_182913,uc001xgs.2,uc010tsi.1_5end | |||
|coexpression_cluster_id=C72 | |||
|description=CAGE_peak_2_at_SYNE2_5end | |||
|id=chr14:64680854..64680891,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;4.05e-11;4!UBERON:0007284;4.05e-11;4!UBERON:0003104;2.16e-08;31 | |||
|ontology_enrichment_disease=DOID:5093!5.46e-08!4;DOID:1612!5.46e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:114;1.55e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.59e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.82e-45!115;UBERON:0001869!7.30e-11!32;UBERON:0001893!5.24e-10!34;UBERON:0000481!9.81e-10!347;UBERON:0002791!3.98e-09!33;UBERON:0001950!4.49e-09!20;UBERON:0002780!7.07e-09!41;UBERON:0001890!7.07e-09!41;UBERON:0006240!7.07e-09!41;UBERON:0002020!9.27e-09!34;UBERON:0003528!9.27e-09!34;UBERON:0003080!1.43e-08!42;UBERON:0002619!4.61e-08!22;UBERON:0000062!4.62e-08!511;UBERON:0001049!9.02e-08!57;UBERON:0005068!9.02e-08!57;UBERON:0006241!9.02e-08!57;UBERON:0007135!9.02e-08!57;UBERON:0000369!1.14e-07!4;UBERON:0002435!1.14e-07!4;UBERON:0000204!1.14e-07!4;UBERON:0010082!1.14e-07!4;UBERON:0003075!1.32e-07!86;UBERON:0007284!1.32e-07!86;UBERON:0000153!1.60e-07!129;UBERON:0007811!1.60e-07!129;UBERON:0004121!1.80e-07!169;UBERON:0003978!2.66e-07!3;UBERON:0009751!2.66e-07!3;UBERON:0000946!2.66e-07!3;UBERON:0002523!2.66e-07!3;UBERON:0005983!2.66e-07!3;UBERON:0002165!2.66e-07!3;UBERON:0002062!2.66e-07!3;UBERON:0007280!2.66e-07!3;UBERON:0004151!3.61e-07!3;UBERON:0000924!4.35e-07!173;UBERON:0006601!4.35e-07!173;UBERON:0002346!5.31e-07!90;UBERON:0000956!7.58e-07!25;UBERON:0000203!7.58e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;1.16e-14;3!UBERON:0000946;1.16e-14;3!UBERON:0004151;2.26e-14;3!UBERON:0007100;8.25e-14;25!UBERON:0005090;4.79e-11;2!UBERON:0001630;4.79e-11;2!UBERON:0000341;9.40e-11;2!UBERON:0001829;2.92e-10;2!UBERON:0002133;3.95e-10;2!UBERON:0002081;5.20e-10;2!UBERON:0003127;5.57e-10;2!UBERON:0001723;1.26e-07;3!UBERON:0001033;1.26e-07;3!UBERON:0001044;1.52e-07;6!UBERON:0003293;1.52e-07;6!UBERON:0003294;1.52e-07;6!UBERON:0010047;1.52e-07;6!UBERON:0003408;1.52e-07;6!UBERON:0000167;1.52e-07;6!UBERON:0000948;3.72e-07;22!UBERON:0007023;6.38e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.04e-19,114;UBERON:0003978,1.16e-14,3;UBERON:0009751,1.16e-14,3;UBERON:0000946,1.16e-14,3;UBERON:0002523,1.16e-14,3;UBERON:0005983,1.16e-14,3;UBERON:0002165,1.16e-14,3;UBERON:0002062,1.16e-14,3;UBERON:0007280,1.16e-14,3;UBERON:0004151,2.32e-14,3;UBERON:0007100,1.16e-12,27;UBERON:0003103,3.73e-12,68;UBERON:0005090,4.79e-11,2;UBERON:0001630,4.79e-11,2;UBERON:0000341,9.41e-11,2;UBERON:0001829,2.92e-10,2;UBERON:0002133,4.04e-10,2;UBERON:0003127,4.64e-10,2;UBERON:0002081,5.33e-10,2;UBERON:0010227,5.33e-10,2;UBERON:0001723,1.26e-07,3;UBERON:0001033,1.26e-07,3;UBERON:0010056,1.26e-07,3;UBERON:0001044,1.52e-07,6;UBERON:0003293,1.52e-07,6;UBERON:0003294,1.52e-07,6;UBERON:0010047,1.52e-07,6;UBERON:0000167,1.52e-07,6;UBERON:0000166,3.35e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0.983907508344908,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0.790204397959275,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90460633053462,0,0,0,0.23874448473769,1.48482340416319,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0.260427761085233,0.349839999984783,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,0,0,0,0.219385397153973,0,0,0,0,0,0.179515288819544,2.17294743844016,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54435528581093,0.216388639742091,0,0.0884575645033392,0,0,0,0,0,71.4294106095922,0,0,0.19566461893209,0,0.789168805698781,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0,0,0,2.32773639572207,0,2.71176888936639,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,17.0362264776075,43.9988014102433,1.43574604915363,9.78427102445056,26.6120149844674,47.312348977677,48.84238449785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0.314727528809989,0,0,0,10.7204298956005,11.9176554665778,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0,0.471612915298998,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0.366078794705889,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0.159633859057151,0.615349092722265,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0.676892955143315,0,13.2857381909626,0,0,0,0.135075169236789,0,0.206686796501184,0.0634158101939068,0,8.22386650285773,43.1703725198686,0,0,0,0,1.21393120847326,0,0.266107110487916,0,0,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0.78493092850514,0.314231179832004,1.12108865325516,0,0,0,0.0714765441766563,0,0,0.173858272302579,0,0,0.17071847709395,0,12.9068207646083,0,0,0.423387050190929,0,0,0,0,0,0,88.0503218575537,155.123501159789,20.8766597640876,15.5427517778925,0,0,0,1.35535298446752,0,0,0,0,0,0,0,0,0,2.113278637917,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,7.33966853447265,0,0,0.135982980381829,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,58.8525790046707,14.0458014563607,0.322944549180031,0.124149428591716,0,2.10035622317944,3.63810940124795,72.7173937975851,77.0024927441882,2.49202596153974,1.72133292942423,9.9798106963804,0,0,0,0,0,0.122241444182866,0,0,2.41528552309231,0 | |||
|short_description=p2@SYNE2 | |||
}} |
Revision as of 20:32, 11 January 2014
Short description: | p2@SYNE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYNE2_5end |
Coexpression cluster: | C72_skeletal_tongue_throat_heart_diaphragm_penis_left |
Association with transcript: | 0bp_to_ENST00000458046, ENST00000557084, NM_182913, uc001xgs.2, uc010tsi.1_5end |
EntrezGene: | SYNE2 |
HGNC: | 17084 |
UniProt: | G3V2Q0Q8WXH0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.04e-19 | 114 |
valve | 1.16e-14 | 3 |
cardiac mesenchyme | 1.16e-14 | 3 |
cardial valve | 1.16e-14 | 3 |
tunica intima | 1.16e-14 | 3 |
heart layer | 1.16e-14 | 3 |
endocardium | 1.16e-14 | 3 |
endocardial cushion | 1.16e-14 | 3 |
presumptive endocardium | 1.16e-14 | 3 |
cardiac chamber | 2.32e-14 | 3 |
primary circulatory organ | 1.16e-12 | 27 |
compound organ | 3.73e-12 | 68 |
muscle structure | 4.79e-11 | 2 |
muscle organ | 4.79e-11 | 2 |
throat | 9.41e-11 | 2 |
major salivary gland | 2.92e-10 | 2 |
atrioventricular valve | 4.04e-10 | 2 |
open tracheal system trachea | 4.64e-10 | 2 |
cardiac atrium | 5.33e-10 | 2 |
future cardiac atrium | 5.33e-10 | 2 |
tongue | 1.26e-07 | 3 |
gustatory system | 1.26e-07 | 3 |
future tongue | 1.26e-07 | 3 |
saliva-secreting gland | 1.52e-07 | 6 |
gland of oral region | 1.52e-07 | 6 |
gland of foregut | 1.52e-07 | 6 |
oral gland | 1.52e-07 | 6 |
oral cavity | 1.52e-07 | 6 |
oral opening | 3.35e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.59e-10 | 2 |