FFCP PHASE1:Hg19::chr15:75074385..75074405,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1445 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2444 | |||
|TSSclassifier=strong | |||
|UniProt=P41240,A8K3B6,B2R6Q4 | |||
|association_with_transcript=-19bp_to_ENST00000220003,ENST00000439220,NM_001127190,NM_004383,uc002ays.2,uc010bka.2,uc010bkb.1_5end | |||
|description=CAGE_peak_3_at_CSK_5end | |||
|id=chr15:75074385..75074405,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.42e-09!71;CL:0000133!1.22e-08!59;CL:0002321!3.03e-08!248;CL:0000220!4.83e-08!246;CL:0000066!3.40e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.47e-09,72;CL:0000133,1.22e-08,59;CL:0002321,4.05e-08,250;CL:0000066,3.46e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.95e-07!235;DOID:14566!3.49e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.99e-07,235;DOID:14566,3.54e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000924!1.32e-10!173;UBERON:0006601!1.32e-10!173;UBERON:0000475!3.03e-10!365;UBERON:0004121!4.62e-10!169;UBERON:0000064!6.31e-09!219;UBERON:0000481!1.44e-07!347;UBERON:0000073!2.86e-07!94;UBERON:0001016!2.86e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.36e-10,171;UBERON:0000924,3.36e-10,171;UBERON:0006601,3.36e-10,171;UBERON:0011216,3.37e-08,223;UBERON:0001016,1.06e-07,89;UBERON:0010371,6.54e-07,104 | |||
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| |||
|short_description=p3@CSK | |||
}} |
Revision as of 00:32, 12 January 2014
Short description: | p3@CSK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CSK_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000220003, ENST00000439220, NM_001127190, NM_004383, uc002ays.2, uc010bka.2, uc010bkb.1_5end |
EntrezGene: | CSK |
HGNC: | 2444 |
UniProt: | P41240A8K3B6B2R6Q4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.47e-09 | 72 |
neurectodermal cell | 1.22e-08 | 59 |
embryonic cell | 4.05e-08 | 250 |
epithelial cell | 3.46e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.36e-10 | 171 |
ectoderm | 3.36e-10 | 171 |
presumptive ectoderm | 3.36e-10 | 171 |
organ system subdivision | 3.37e-08 | 223 |
nervous system | 1.06e-07 | 89 |
ecto-epithelium | 6.54e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.99e-07 | 235 |
disease of cellular proliferation | 3.54e-07 | 239 |