FFCP PHASE1:Hg19::chr17:47785265..47785332,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20798 | |||
|TSSclassifier=strong | |||
|UniProt=P78383,B4DJG9,D6R9G9,D6RHG0 | |||
|association_with_transcript=0bp_to_ENST00000240333,ENST00000415270,ENST00000435059,ENST00000508607,ENST00000509781,ENST00000511763,ENST00000515850,NM_005827,uc002iph.1,uc002ipi.1,uc010wly.1_5end | |||
|description=CAGE_peak_1_at_SLC35B1_5end | |||
|id=chr17:47785265..47785332,- | |||
|ontology_enrichment_celltype=CL:0000220!1.75e-20!246;CL:0002321!4.39e-20!248;CL:0000066!9.80e-19!254;CL:0000548!2.84e-16!679;CL:0000004!2.84e-16!679;CL:0000255!2.84e-16!679;CL:0000012!1.44e-15!682;CL:0000055!6.26e-11!180;CL:0000223!4.12e-08!59;CL:0000359!6.78e-08!32;CL:0000222!7.87e-08!119;CL:0000192!2.52e-07!42;CL:0000514!2.52e-07!42;CL:0000144!4.12e-07!625;CL:0000393!4.89e-07!60;CL:0000211!4.89e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.95e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.28e-19,250;CL:0000066,3.80e-19,253;CL:0000223,3.14e-08,58;CL:0000359,6.78e-08,32;CL:0000222,1.86e-07,121;CL:0000192,9.34e-07,43;CL:0000514,9.34e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!4.18e-15!143;DOID:305!6.56e-12!106;DOID:14566!4.07e-11!239;DOID:162!6.98e-11!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.18e-15,143;DOID:305,6.56e-12,106;DOID:14566,4.07e-11,239;DOID:162,6.98e-11,235 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.57e-12!238;UBERON:0009142!1.57e-12!238;UBERON:0000490!2.81e-12!138;UBERON:0002100!3.25e-12!216;UBERON:0003914!3.49e-11!118;UBERON:0000926!7.41e-10!448;UBERON:0004120!7.41e-10!448;UBERON:0006603!7.41e-10!448;UBERON:0005256!1.83e-09!143;UBERON:0001637!6.87e-09!42;UBERON:0003509!6.87e-09!42;UBERON:0004572!6.87e-09!42;UBERON:0001981!2.99e-08!60;UBERON:0007500!2.99e-08!60;UBERON:0004537!2.99e-08!60;UBERON:0006965!2.99e-08!60;UBERON:0009569!5.65e-08!113;UBERON:0000055!8.59e-08!69;UBERON:0004872!1.63e-07!84;UBERON:0000480!1.86e-07!626;UBERON:0000468!2.07e-07!659;UBERON:0004119!2.80e-07!169;UBERON:0000925!2.80e-07!169;UBERON:0006595!2.80e-07!169;UBERON:0000467!3.50e-07!625;UBERON:0000486!4.67e-07!82;UBERON:0004290!5.83e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;8.08e-07;42!UBERON:0003509;8.08e-07;42!UBERON:0004572;8.08e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.97e-13,199;UBERON:0000490,1.28e-12,148;UBERON:0003914,1.26e-11,117;UBERON:0005256,1.08e-09,122;UBERON:0001637,6.87e-09,42;UBERON:0003509,6.87e-09,42;UBERON:0004572,6.87e-09,42;UBERON:0003104,8.08e-09,160;UBERON:0009142,8.08e-09,160;UBERON:0007500,3.98e-08,59;UBERON:0001981,3.98e-08,59;UBERON:0004537,3.98e-08,59;UBERON:0006965,3.98e-08,59;UBERON:0009569,4.93e-08,112;UBERON:0000055,1.14e-07,68;UBERON:0004872,2.14e-07,83;UBERON:0007503,3.24e-07,78;UBERON:0004119,4.50e-07,160;UBERON:0000925,4.50e-07,160;UBERON:0006595,4.50e-07,160 | |||
|phase1_expression=48.1447705066975,43.0342053020876,42.9910932492712,61.0447119954096,33.5220820820466,58.4466811147247,58.2589719787114,68.2257463300977,32.6482035249798,55.535869649341,70.4779179652152,47.1833363801172,42.7302504730095,27.5998967100904,22.5350215494983,40.3395087871065,30.7374209292228,36.5155045193687,35.1311615129165,27.2097538349701,35.4961202765,35.4203835270239,38.0693862884305,36.682345919533,44.8187223353446,20.9372731749386,22.741863277635,20.3860923602429,36.1895134700992,22.2621050896383,39.0136630756512,45.9710612239464,50.3013884359678,66.185967819855,14.8737025114179,23.1735848954497,28.1856421761453,27.145775018062,30.4827560154615,32.1176088659461,23.2872093209521,23.6442376193855,18.5454408696614,25.8808865027625,25.695564170839,20.3770611397766,28.8212005763049,22.6142338412004,33.7579944275663,28.4815468398929,29.4584812508466,36.1817811729535,21.0294865249337,21.3009945582663,35.2108865145289,28.0481085918481,30.2925826564209,31.2365643378668,26.6292986362685,26.3161802202397,34.5242047931482,26.3881040149373,31.3157942465962,25.5734850319616,35.1153178740587,20.425868088881,29.8954679517876,26.1298611867013,26.5956288394303,30.1892494140112,27.2429776185016,26.1477121551171,33.2285506812929,38.2372068224615,37.4183567938477,43.8186569112506,33.6985893439485,30.9364399253503,24.108838004562,32.2064400427611,33.2190850922481,27.947615525989,33.4392864476513,18.5687127829125,14.2321480618169,20.4830506831923,19.2190073777286,14.3688109988621,23.1365705474702,25.7594513724548,17.6456020423929,23.4894875748376,21.0250275468876,21.1474125726441,26.3439024601322,20.8073426972311,5.31116379307349,8.64623678048162,9.25206745497792,19.8951929514907,10.1035902656413,13.7299863663073,9.74133642039557,26.1814573680158,20.9170194307134,21.045719985444,15.1650163708409,28.9486382580026,29.913649938772,30.7498881608874,30.1221519386575,20.2862160014537,12.307784742451,9.09638815505025,7.31748666634838,24.2481993372792,10.7301738208538,18.8995095015446,11.6389058328971,14.9725744732325,14.9749194386976,22.810849066761,10.6908334545219,11.3908083927432,14.9916871862815,13.969857870597,16.4225599384209,10.4835506476861,12.3022490060413,10.2825326756787,2.43806866313962,36.2178464239963,33.755716326692,28.1922538859962,33.5896400126046,45.7714999916203,49.3077287171682,59.8560890472242,26.5642836231031,35.4767035940102,35.573088205716,27.8985430810128,37.1581194058393,33.7413842933831,24.0165071304466,18.2836224164231,27.1234239458485,18.6022686958167,15.4438625910635,12.6295550452052,42.3363927691082,43.8719643504123,39.2268766816582,38.4409400508327,50.7594317813986,48.1456573395118,50.9947718349818,25.3248423985942,25.6151709134431,26.7776490211736,36.2546385398232,43.3355100259552,43.6871083011223,33.457340311474,61.5707880390137,33.8445970196662,25.8208778520095,36.9365655985297,52.1276567384003,40.8184233614295,44.3348220311586,14.495845917967,19.3890132074163,29.2183014935498,40.7517000390161,43.4342655009509,23.5688341847529,51.0569184932888,37.2401801308275,44.2935304112423,59.7794376086348,54.7601957486095,22.4071945487832,35.2941960822583,38.0866234254359,28.606553824892,20.74233328128,46.3956435030917,26.8457666074076,45.6377457235559,30.1886334714638,30.2981006500913,36.7451583715659,38.3430702297138,22.6611130092932,34.7621117992303,20.9751335786804,52.2721257204104,48.9588519971543,29.1251635820168,41.6798522253418,35.687256158262,29.5279706897835,22.1651292387346,32.9233215660628,58.2326812018137,41.7661803760339,51.9519398872896,30.3168484314177,35.8776413215193,37.723878406402,61.8187657933869,23.9081867833178,23.1876486041066,40.0151241112918,63.1223482582336,30.2054715999716,16.9130628743557,28.0752190859013,17.1344820227941,47.9262949897429,33.9534571027148,56.4636772393924,39.2319531921493,42.2756486915794,30.6880917066234,30.0055317078805,27.1686025059045,31.1399766890309,35.7630639803028,33.8109940173342,27.0083245716114,64.1443082552245,59.1781663137454,82.8809528114883,22.289660545535,33.9283356384705,63.649058421436,56.8130405563203,61.4578126202879,65.9557956939716,58.8274499049497,56.2331367293299,62.9662209107968,58.0815536771024,60.0205564836369,40.5985500043557,43.4749498790682,45.6847152577854,32.3419165048192,55.7722153216056,56.0211513506247,58.488200761459,19.4243763742446,123.357403858743,26.9361462168685,26.5595690688874,71.9371220848765,46.1427983369386,22.8693459541568,67.4423191992372,46.797065337581,46.1860294480874,22.0267769452646,20.429112797033,37.8240093134013,46.7615367702377,40.1436261215002,93.2441189591945,88.4240746957719,33.485512827886,50.3109170049361,40.7249384671115,58.1149770718017,42.4994784343115,34.1677984354151,36.2712016946536,34.8760726216754,34.504441124869,30.5451207495485,16.8172508965262,9.12243708379397,10.3766366460212,8.8369703398466,43.3055639072593,41.254749960294,49.2313278282197,54.7431827272657,53.4702962057282,51.6590059491538,33.1558661851471,33.0786698818814,37.4925659196621,39.9693657724178,42.4011227685511,3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| |||
|short_description=p1@SLC35B1 | |||
}} |
Revision as of 16:07, 20 January 2014
Short description: | p1@SLC35B1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC35B1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000240333, ENST00000415270, ENST00000435059, ENST00000508607, ENST00000509781, ENST00000511763, ENST00000515850, NM_005827, uc002iph.1, uc002ipi.1, uc010wly.1_5end |
EntrezGene: | SLC35B1 |
HGNC: | 20798 |
UniProt: | P78383B4DJG9D6R9G9D6RHG0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.28e-19 | 250 |
epithelial cell | 3.80e-19 | 253 |
endodermal cell | 3.14e-08 | 58 |
vascular associated smooth muscle cell | 6.78e-08 | 32 |
mesodermal cell | 1.86e-07 | 121 |
smooth muscle cell | 9.34e-07 | 43 |
smooth muscle myoblast | 9.34e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.97e-13 | 199 |
unilaminar epithelium | 1.28e-12 | 148 |
epithelial tube | 1.26e-11 | 117 |
trunk mesenchyme | 1.08e-09 | 122 |
artery | 6.87e-09 | 42 |
arterial blood vessel | 6.87e-09 | 42 |
arterial system | 6.87e-09 | 42 |
mesenchyme | 8.08e-09 | 160 |
entire embryonic mesenchyme | 8.08e-09 | 160 |
epithelial tube open at both ends | 3.98e-08 | 59 |
blood vessel | 3.98e-08 | 59 |
blood vasculature | 3.98e-08 | 59 |
vascular cord | 3.98e-08 | 59 |
subdivision of trunk | 4.93e-08 | 112 |
vessel | 1.14e-07 | 68 |
splanchnic layer of lateral plate mesoderm | 2.14e-07 | 83 |
epithelial vesicle | 3.24e-07 | 78 |
endoderm-derived structure | 4.50e-07 | 160 |
endoderm | 4.50e-07 | 160 |
presumptive endoderm | 4.50e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.18e-15 | 143 |
carcinoma | 6.56e-12 | 106 |
disease of cellular proliferation | 4.07e-11 | 239 |
cancer | 6.98e-11 | 235 |