FFCP PHASE1:Hg19::chr19:35739631..35739674,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51599 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |||
|TSSclassifier=strong | |||
|UniProt=E9PHD4,A6NDW3,Q86X29,Q9BT33,Q9BWS2 | |||
|association_with_transcript=72bp_to_ENST00000354900,ENST00000360798,ENST00000361790,NM_015925,NM_205834,NM_205835,uc002nyl.2,uc002nym.2,uc002nyn.2,uc002nyo.2,uc010xsr.1_5end | |||
|coexpression_cluster_id=C1817 | |||
|description=CAGE_peak_2_at_LSR_5end | |||
|id=chr19:35739631..35739674,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.63e-24!254;CL:0000223!7.44e-14!59;CL:0002076!1.24e-12!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.10e-10;42!CL:0002251;3.67e-07;20!CL:1000507;4.12e-07;10!CL:1000494;4.12e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.84e-26,253;CL:0000223,1.19e-14,58;CL:0002076,4.38e-13,42;CL:1000507,3.77e-07,10;CL:1000494,3.77e-07,10;CL:0002251,4.16e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;1.08e-08;58 | |||
|ontology_enrichment_disease=DOID:305!9.44e-21!106;DOID:0050687!3.64e-12!143;DOID:1749!4.57e-08!14;DOID:299!1.59e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.69e-08;14!DOID:299;3.02e-07;25!DOID:305;3.64e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.25e-21,106;DOID:0050687,1.19e-12,143;DOID:1749,1.71e-08,14;DOID:299,3.02e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.03e-14!169;UBERON:0000925!1.03e-14!169;UBERON:0006595!1.03e-14!169;UBERON:0001007!3.39e-11!155;UBERON:0001555!3.39e-11!155;UBERON:0007026!3.39e-11!155;UBERON:0004921!3.70e-11!129;UBERON:0004185!3.70e-11!129;UBERON:0005177!6.16e-11!107;UBERON:0000077!2.81e-10!130;UBERON:0007023!1.71e-09!115;UBERON:0005911!1.89e-09!82;UBERON:0001041!3.83e-09!98;UBERON:0000466!1.37e-08!126;UBERON:0005172!2.49e-08!55;UBERON:0005173!2.49e-08!55;UBERON:0001008!9.07e-08!45;UBERON:0006554!1.27e-07!44;UBERON:0001004!3.53e-07!72;UBERON:0009569!6.27e-07!113;UBERON:0000464!7.63e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;6.66e-09;30!UBERON:0001008;6.66e-09;30!UBERON:0004211;4.12e-07;10!UBERON:0009773;4.12e-07;10!UBERON:0001231;4.12e-07;10!UBERON:0004810;4.12e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.88e-16,160;UBERON:0000925,5.88e-16,160;UBERON:0006595,5.88e-16,160;UBERON:0005177,3.78e-13,101;UBERON:0004921,1.72e-12,118;UBERON:0001007,2.37e-12,145;UBERON:0001555,2.37e-12,145;UBERON:0007026,2.37e-12,145;UBERON:0001008,4.20e-11,48;UBERON:0006554,6.01e-11,47;UBERON:0001041,1.61e-10,87;UBERON:0005911,6.65e-10,82;UBERON:0005172,7.18e-10,54;UBERON:0005173,7.18e-10,54;UBERON:0009569,1.92e-08,112;UBERON:0007023,8.98e-08,114;UBERON:0002417,2.18e-07,60;UBERON:0000916,2.18e-07,60;UBERON:0002113,3.18e-07,26;UBERON:0003918,3.18e-07,26;UBERON:0011143,3.18e-07,26;UBERON:0005095,3.18e-07,26;UBERON:0007687,3.18e-07,26;UBERON:0004810,3.77e-07,10;UBERON:0001004,4.97e-07,74;UBERON:0005631,5.94e-07,14;UBERON:0000158,5.94e-07,14 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,15.2355040630935,67.6867132933255,15.5093374212422,21.6288922147332,0,0,0,0,0,0,0,0,0,0,0,0,12.2261449196722,11.9866860596921,11.3343525091698,0,0.383829398097213,1.39334510984468,13.7913183671839,15.9639136952473,12.5716363456708,2.09161441566814,2.27470771979874,0,0.553995408531877,1.60435557976113,1.73608696572681,0.895661896959697,1.94336199611388,0.515151135268373,0,0.377875943688809,0.242584061187816,0,1.6446715520873,0.309706370895104,0,1.0246428261164,0.236482229888585,0,1.93645405075148,1.35426486594342,0.188242339542605,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0.329851300186716,0.398927315243264,0,0,2.26954089876456,0,0,0.521482918420201,0.434377689410233,1.21079900526674,0.736555271975129,0.316462387440884,0,0,0,0,0,0,0,0,0,5.27988733383968,6.55366333514558,8.00558328477199,5.9742231159311,4.80475184443215,4.59801951963587,5.2883589822789,2.86216126360609,9.67662047486062,8.22132065119314,6.88091810625412,0,0.560508562981536,0.263384084775077,12.5894252872853,9.43225830597995,12.5416914389701,13.2077331358636,23.1404809309849,24.1458380924714,27.2757419771076,8.69001563704354,11.7842362989935,16.6150420937716,12.9985854607207,13.0653146120189,11.1851038901495,1.15106533222573,2.21080014228679,0.579606171470105,7.8591878475892,11.5042556078577,11.4989076185474,1.47302145506836,7.2811893784365,13.0578429283399,9.36172860472161,6.05274287215784,3.90650072313851,7.60361635558699,6.17357988218868,8.83107616965487,7.49584359314075,9.23431282971666,5.74789597844733,4.23374160771938,3.7441627409691,6.80674698249155,0,0,0.383587685530591,0,0,0,0,0,1.22895262313288,0.665188192387692,0.702678285545008,4.84622579341537,33.8794618112064,15.572946596946,3.24547393654683,1.74129737299267,2.52620124985844,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,20.0603263985566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.6947799187807,21.8196896472668,32.6957238743464,19.5157929807353,16.3011615035427,18.7072248019925,15.3418361422748,17.9147804121696,6.93456982244077,0,0,0,0,0,1.0647612003586,1.34867752062481,1.20505514941741,1.65440959098591,1.52515610864684,1.18635309555548,2.15730093056263,2.35465758150415,1.15424147083917,0,0,2.057870056657,0,30.4212083572394,44.2272247504932,19.4960669204863,0,27.5494102336574,0.343135620597051,21.9500570817251,23.6043681841001,11.0581869652794,11.8513209802918,0,0,0,2.31860809950154,0,0,0,0,19.7551099489819,21.4621540523718,0.246217006087397,1.40402559083543,0.297262324577456,11.2480600784132,21.501712409454,21.8333649753275,11.5530494286674,13.3691611716422,20.7026646749214,0,1.40877494421162,10.9883901236609,16.5737946429506,20.0725469147944,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0994328148232,2.43247561282381,0.502257091432126,0,0,0,0,0,0,0,0,4.3346767244424,3.88129634747131,2.95188983443421,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,5.16920065307218,6.03999762292127,5.44310544797566,20.6126748583456,14.9791895559447,13.9099534931653,0,0,0,0,0,0,0,0,0,0,0,0,23.2050143215915,36.0911646545913,23.8489761343971,0,0,0,28.8767752260744,23.4896778168465,21.9617935369519,23.3822759445217,15.1994345605741,0,0,0,0,8.94123243894714,13.0439341202262,24.4681222123237,40.7227244375075,9.85048920777585,0,0,2.3080511260475,4.59220503979588,7.48370307727897,19.9899562596581,0,0,14.9309039879005,14.95138565884,0,0,0,0,0,0,0,0.0852266274161009,0,17.5202010282637,10.7626437724459,10.2090169995667,15.1736671283325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.71843338527672,12.73574323518,4.3556393944529,19.5819105615701,27.1218384782875,33.6942951335251,22.1715076768338,12.8645104115897,3.55213326462519,4.58782324285425,6.83576624608995,5.95579438644473,3.70226045777575,6.48473311192717,2.70015718619057,3.96562588147135,1.92283328029452,3.84991942105343,28.9147454857617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.36277837387947,4.68826173670061,8.98067860946399,0,0,65.4159888181271,35.0418323382514,66.0395509513349,0,0.984685914873589,0,0,4.01138275443188,2.39097585901284,6.90709788827869,5.54252045279407,3.57940388757542,3.44637455290994,0,11.1436755422685,25.6000279786121,0,1.87422470710174,4.7896618469388,0,2.90799823828566,1.11321717794222,0,9.11497163798316,11.8945599994826,7.24999575434793,8.64830206969797,9.15313141053959,9.92828263425333,0,0,0.173624994933292,0.885741385813839,1.4471572635049,0,0.774054819518572,1.77328571372128,2.19385397153973,0.653630781113941,16.5914255691538,4.54006525172403,3.19037756371603,3.4584585658209,8.79624915215767,8.58314238183864,51.678187876571,10.625320834616,44.7749211855653,0,0,0.166211681900156,7.67025246098414,7.05825123543862,7.38414982693708,0.569261198172555,0,3.58696709697646,10.6101325303446,13.1458356433565,0.216388639742091,7.9620954486280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| |||
|short_description=p2@LSR | |||
}} |
Revision as of 22:45, 20 January 2014
Short description: | p2@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | 72bp_to_ENST00000354900, ENST00000360798, ENST00000361790, NM_015925, NM_205834, NM_205835, uc002nyl.2, uc002nym.2, uc002nyn.2, uc002nyo.2, uc010xsr.1_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | E9PHD4A6NDW3Q86X29Q9BT33Q9BWS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.84e-26 | 253 |
endodermal cell | 1.19e-14 | 58 |
endo-epithelial cell | 4.38e-13 | 42 |
kidney tubule cell | 3.77e-07 | 10 |
nephron tubule epithelial cell | 3.77e-07 | 10 |
epithelial cell of alimentary canal | 4.16e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.88e-16 | 160 |
endoderm | 5.88e-16 | 160 |
presumptive endoderm | 5.88e-16 | 160 |
trunk region element | 3.78e-13 | 101 |
subdivision of digestive tract | 1.72e-12 | 118 |
digestive system | 2.37e-12 | 145 |
digestive tract | 2.37e-12 | 145 |
primitive gut | 2.37e-12 | 145 |
renal system | 4.20e-11 | 48 |
urinary system structure | 6.01e-11 | 47 |
foregut | 1.61e-10 | 87 |
endo-epithelium | 6.65e-10 | 82 |
abdomen element | 7.18e-10 | 54 |
abdominal segment element | 7.18e-10 | 54 |
subdivision of trunk | 1.92e-08 | 112 |
adult organism | 8.98e-08 | 114 |
abdominal segment of trunk | 2.18e-07 | 60 |
abdomen | 2.18e-07 | 60 |
kidney | 3.18e-07 | 26 |
kidney mesenchyme | 3.18e-07 | 26 |
upper urinary tract | 3.18e-07 | 26 |
kidney rudiment | 3.18e-07 | 26 |
kidney field | 3.18e-07 | 26 |
nephron tubule epithelium | 3.77e-07 | 10 |
respiratory system | 4.97e-07 | 74 |
extraembryonic membrane | 5.94e-07 | 14 |
membranous layer | 5.94e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.25e-21 | 106 |
cell type cancer | 1.19e-12 | 143 |
squamous cell carcinoma | 1.71e-08 | 14 |
adenocarcinoma | 3.02e-07 | 25 |