FFCP PHASE1:Hg19::chr2:217277480..217277505,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50485 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11102 | |||
|TSSclassifier=strong | |||
|UniProt=C9JP32 | |||
|association_with_transcript=0bp_to_ENST00000434435,ENST00000496037_5end | |||
|description=CAGE_peak_2_at_SMARCAL1_5end | |||
|id=chr2:217277480..217277505,+ | |||
|ontology_enrichment_celltype=CL:0000220!2.68e-24!246;CL:0002321!4.98e-24!248;CL:0000055!1.61e-21!180;CL:0000066!2.22e-17!254;CL:0000548!1.46e-13!679;CL:0000004!1.46e-13!679;CL:0000255!1.46e-13!679;CL:0000222!2.77e-13!119;CL:0000057!6.00e-13!75;CL:0000012!6.54e-13!682;CL:0000144!2.81e-09!625;CL:0002371!8.52e-09!591;CL:0000183!3.13e-08!59;CL:0002620!7.86e-08!23;CL:0000192!1.33e-07!42;CL:0000514!1.33e-07!42;CL:0000680!4.49e-07!57;CL:0000056!4.49e-07!57;CL:0000355!4.49e-07!57;CL:0000213!5.67e-07!57;CL:0000215!5.67e-07!57;CL:0000187!5.68e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.13e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.79e-24,250;CL:0000066,1.49e-17,253;CL:0000057,3.80e-13,76;CL:0000222,5.17e-13,121;CL:0002620,6.53e-08,23;CL:0000192,3.59e-07,43;CL:0000514,3.59e-07,43;CL:0000213,6.04e-07,58;CL:0000215,6.04e-07,58;CL:0000680,8.07e-07,58;CL:0000056,8.07e-07,58;CL:0000355,8.07e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.82e-15!365;UBERON:0002100!6.53e-11!216;UBERON:0000119!1.22e-09!312;UBERON:0005256!1.34e-09!143;UBERON:0000481!1.43e-09!347;UBERON:0003104!2.50e-09!238;UBERON:0009142!2.50e-09!238;UBERON:0000483!3.59e-09!309;UBERON:0000468!4.40e-09!659;UBERON:0000914!1.41e-08!83;UBERON:0002329!1.41e-08!83;UBERON:0003077!1.41e-08!83;UBERON:0003059!1.41e-08!83;UBERON:0007282!1.41e-08!83;UBERON:0009618!1.41e-08!83;UBERON:0007285!1.41e-08!83;UBERON:0000486!1.51e-08!82;UBERON:0003102!1.90e-07!95;UBERON:0002097!3.65e-07!40 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,8.68e-10,309;UBERON:0000483,2.59e-09,306;UBERON:0002100,7.53e-09,199;UBERON:0003102,1.26e-08,99;UBERON:0000486,2.65e-08,83;UBERON:0003104,5.96e-08,160;UBERON:0009142,5.96e-08,160;UBERON:0002097,2.17e-07,41;UBERON:0007503,2.76e-07,78;UBERON:0002199,5.18e-07,46;UBERON:0002416,5.18e-07,46 | |||
|phase1_expression=2.72517568905835,2.5692062866918,1.9733616573436,5.00366491765652,0.893922188854576,3.48935409640147,5.06599756336621,0,1.82829939739887,4.17747692052565,4.88460817580699,4.58726881473362,3.4289707169699,4.20805600064159,5.30235801164665,2.6893005858071,2.41077811209591,2.92124036154949,4.87932798790507,5.90981078768582,4.48801520737357,2.82109249330279,2.57612388417951,2.46373965131192,2.00868223351684,1.68109492645493,1.39571002064908,1.96776953284198,0,0,0.464448369948228,2.75826367343678,5.12050061923025,7.02532619316897,1.16200800870452,0.568676929949686,0.587200878669695,0,0,0.217010870715852,3.58264758783879,1.6194683300949,1.54545340580512,0.581592955118259,0,0.485168122375632,0,0,0.309706370895104,0,0.512321413058201,0,0,0.645484683583826,0,0,0.272906150057846,0.674170453335254,0.612167784741805,0.320929027076094,0,0.329851300186716,0.598390972864896,0,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0.217188844705117,0.605399502633369,0.368277635987565,0,0.422510572623884,0.850417199860174,1.04829322754188,0.673971786878971,0.450530678524519,0.803627933485401,0.285012743741249,0.39783335439818,0.730656615058536,0,0.546138611262131,0,0.426730222566507,0,0,1.32208974556972,0.954053754535364,0,0,0.382273228125229,0,0,2.37045676297569,0.196709770113833,0,0.205601498999509,1.00311897234407,0.32592226663359,0,0,0.334231370655521,0.589211814949674,0.664601683750863,0.270803863765016,0.25618263945135,0.910415432919148,0.328875809207352,0.552700035571697,0,0.296573126324121,0,0,0.113309342697566,0,0.34362744548263,0.253019692019503,0.318565414324097,0,0.950452044448374,0,0.255973222308837,0,0.236777252044017,0,0,0,0.144824403882799,0,2.01210257911091,2.81297636055767,4.3372698286148,7.01873074890245,2.17269778441236,7.95285947051099,1.94653948121054,2.74150969775797,3.1042115644759,3.16205228495254,2.94702919869853,5.10013403609559,4.82019775619758,1.29818957461873,1.0447784237956,1.99436940778298,0.476981248610684,1.14398982156026,1.11437250398869,1.59009925893364,3.4409383804245,3.81854551768354,2.82653970962005,1.67799774483962,2.75118041940067,1.67195973229448,5.94358546089456,3.91342888955381,4.68608857870538,6.8480983908555,3.04108842287405,2.92874469057803,5.14728312484216,0.81014194788176,3.83988831621543,3.36794058939255,2.36484109014977,1.53316637465883,0.949265659568129,2.01521918323448,0,0,6.54141078213801,1.98788780678127,2.27934920996244,3.57504788195691,4.87622255272983,2.83734705758686,3.36406560085384,0,2.96001058100592,4.35695449559673,3.77189881795127,2.12500474047496,7.26515652695671,1.15235184896,10.0758215688533,2.49728061464256,2.85235910772225,1.94283284717341,4.69737994575059,3.23745888736263,3.08991774744947,7.55370433643105,2.82518929817066,3.09977343527296,1.18800285728205,1.97813543422845,4.55080680969013,4.31170885089743,6.06010010234638,3.1279629967991,3.60183350129438,3.5118209670467,4.29082914118628,2.40380894250555,1.36118619792025,4.66413052791041,3.84403299873421,4.4505699243508,5.70173082560364,5.04957393268351,5.41045134095821,5.21127197728451,4.55696097051419,7.3077753870899,8.07788077581166,2.76149695926898,4.52608959092673,8.52023022039874,5.44061330429257,5.93462073086707,4.05847791642923,3.54569956768085,5.16248271700207,2.6834215348511,1.06023814657188,3.60201222895507,1.96956004529204,1.51392510525377,4.01475094983413,0,2.57296375277154,1.38134921352481,1.85747171212792,2.88751792667834,2.01121560067735,2.19160097101532,3.13314338848527,2.42646740011267,4.57546832594053,1.66089433377768,2.02246962240247,1.96221465125346,3.8474715694639,8.85786545549578,4.20725321410337,6.5851841813024,0,0,2.94848165003288,1.77236972004421,1.32438929824395,2.09080345523293,4.63233087806019,4.7192622725709,4.49607013030478,2.6137532827024,6.11083738046295,4.56131627434455,6.23960871167747,0,3.94163376915261,2.34817388471643,3.17606185074362,3.24089858803628,0.761016608938393,0.790204397959275,0,3.93947209739836,1.40402559083543,2.52672975890838,3.74935335947108,4.53551746136921,7.65585525108887,6.80644772541647,4.94077695473735,3.4504441124869,1.47798971368783,1.49682337822484,1.03664057770386,1.00883967391873,1.51490920111656,3.93686944611448,4.96584953225761,8.20522130470329,0,2.15937734676979,1.8020583470635,3.71574362419752,5.38229204857731,3.92364061949952,2.42016343209135,3.23179289394444,0,1.690605505112,2.6593811658487,3.12022310734098,4.62973273671856,5.67396528093113,3.19706614819319,3.14551586047925,3.25572963234866,5.76268235746538,2.60588947434988,1.77695974371273,3.95975936466715,2.41151501647669,0.871533458600294,1.79951384127703,2.43247561282381,3.01354254859276,4.21667878966063,3.59437283237374,3.44585807502342,1.42636905040718,2.31650090668127,4.31500277355805,2.14873155887875,0.560425719967636,0,0,0.128343036279748,1.52456774533478,2.60279707715243,1.54657762555539,3.01529277601828,0.637938751653163,0,0,0,4.2942022101699,2.00068208423871,4.34024037919577,2.9115920614313,4.63915370872621,3.6271555457805,3.04567678981054,2.7085148975494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| |||
|short_description=p2@SMARCAL1 | |||
}} |
Revision as of 08:30, 21 January 2014
Short description: | p2@SMARCAL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMARCAL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000434435, ENST00000496037_5end |
EntrezGene: | SMARCAL1 |
HGNC: | 11102 |
UniProt: | C9JP32 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.79e-24 | 250 |
epithelial cell | 1.49e-17 | 253 |
fibroblast | 3.80e-13 | 76 |
mesodermal cell | 5.17e-13 | 121 |
skin fibroblast | 6.53e-08 | 23 |
smooth muscle cell | 3.59e-07 | 43 |
smooth muscle myoblast | 3.59e-07 | 43 |
lining cell | 6.04e-07 | 58 |
barrier cell | 6.04e-07 | 58 |
muscle precursor cell | 8.07e-07 | 58 |
myoblast | 8.07e-07 | 58 |
multi-potent skeletal muscle stem cell | 8.07e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
cell layer | 8.68e-10 | 309 |
epithelium | 2.59e-09 | 306 |
trunk | 7.53e-09 | 199 |
surface structure | 1.26e-08 | 99 |
multilaminar epithelium | 2.65e-08 | 83 |
mesenchyme | 5.96e-08 | 160 |
entire embryonic mesenchyme | 5.96e-08 | 160 |
skin of body | 2.17e-07 | 41 |
epithelial vesicle | 2.76e-07 | 78 |
integument | 5.18e-07 | 46 |
integumental system | 5.18e-07 | 46 |