FFCP PHASE1:Hg19::chr4:72204780..72204830,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8671 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11030 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y6R1 | |||
|association_with_transcript=10bp_to_ENST00000340595,ENST00000512686,NM_003759,uc003hgb.3,uc003hgc.3_5end | |||
|coexpression_cluster_id=C51 | |||
|description=CAGE_peak_2_at_SLC4A4_5end | |||
|id=chr4:72204780..72204830,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000946;1.97e-14;1!CL:0002601;1.97e-14;1!CL:0000786;1.97e-14;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002601,1.41e-14,1;CL:0000946,1.61e-14,1;CL:0000786,1.61e-14,1;CL:0000980,1.61e-14,1;CL:0000785,6.58e-08,2;CL:0000955,6.58e-08,2;CL:0000818,6.58e-08,2;CL:0000954,6.58e-08,2;CL:0000816,6.58e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0003918;6.38e-22;10!UBERON:0007687;6.38e-22;10!CL:0000954;7.27e-08;2!UBERON:0003104;1.77e-07;31 | |||
|ontology_enrichment_disease=DOID:0060072!5.54e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:3910;7.27e-08;2!DOID:3493;7.27e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,5.74e-08,2;DOID:3493,8.04e-08,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.67e-09;24!UBERON:0011143;2.67e-09;24!UBERON:0004903;7.27e-08;2!UBERON:0002173;7.27e-08;2!UBERON:0002186;7.27e-08;2!UBERON:0000489;9.92e-08;29!UBERON:0006554;1.77e-07;30!UBERON:0001008;1.77e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,1.34e-08,26;UBERON:0003918,1.34e-08,26;UBERON:0011143,1.34e-08,26;UBERON:0005095,1.34e-08,26;UBERON:0007687,1.34e-08,26;UBERON:0004903,5.74e-08,2;UBERON:0002173,5.74e-08,2;UBERON:0002186,5.74e-08,2;UBERON:0000489,3.05e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,47.1524671791765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0.717558542755448,0,0.211931901159562,0,0,0,0,0.337552664482532,0,1.00973509697646,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616838775210622,0.177561725313127,0.492762936082855,0,0.232420756919918,0,0,0,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.272999822815972,0.282810863907425,0,0,0,0,0,0,0,0,0,0,0,0,1.41904425628239,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,2.23676107892416,1.00109485027145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369254416383208,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,1.5255219017566,0,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0,0,0.160317640503067,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,113.401412803546,24.5487472471791,0,0,0,0,0,0,0.542999601753713,0,0.979762080328227,0,0,1.19271615249795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,1.10961172300523,0,0,0,0,0,0.310874401165561,0.147855149989634,0,0,0.155262956876259,0,0.53168342911599,0,0.150257608997218,0,0,0.363697318405119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.91852100187456,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,0.20170506870352,0,0,0,0,0,0.781078098613847,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,1.38280785066935,0,0,0,0,0.111231401892069,0,0,0,0,14.4671486116476,3.8220135030964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09726132484042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33639558774184,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@SLC4A4 | |||
}} |
Revision as of 01:26, 22 January 2014
Short description: | p2@SLC4A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC4A4_5end |
Coexpression cluster: | C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas |
Association with transcript: | 10bp_to_ENST00000340595, ENST00000512686, NM_003759, uc003hgb.3, uc003hgc.3_5end |
EntrezGene: | SLC4A4 |
HGNC: | 11030 |
UniProt: | Q9Y6R1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
uterine smooth muscle cell | 1.41e-14 | 1 |
antibody secreting cell | 1.61e-14 | 1 |
plasma cell | 1.61e-14 | 1 |
plasmablast | 1.61e-14 | 1 |
mature B cell | 6.58e-08 | 2 |
pre-B-II cell | 6.58e-08 | 2 |
transitional stage B cell | 6.58e-08 | 2 |
small pre-B-II cell | 6.58e-08 | 2 |
immature B cell | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
kidney | 1.34e-08 | 26 |
kidney mesenchyme | 1.34e-08 | 26 |
upper urinary tract | 1.34e-08 | 26 |
kidney rudiment | 1.34e-08 | 26 |
kidney field | 1.34e-08 | 26 |
bronchoalveolar duct junction | 5.74e-08 | 2 |
alveolar duct | 5.74e-08 | 2 |
bronchiole | 5.74e-08 | 2 |
cavitated compound organ | 3.05e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 5.74e-08 | 2 |
signet ring cell adenocarcinoma | 8.04e-08 | 2 |