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{{UBERON
{{UBERON
|id=UBERON:0003051
|alt_id=UBERON:0004373;;UBERON:XAO_0000006-ZFA_0000051
|name=ear vesicle
|namespace=
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Auditory_vesicle, ZFIN:curator]
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;VHOG:0001148;;XAO:0000006;;ZFA:0000051
|is_a=UBERON:0004121;;UBERON:0005085;;UBERON:0005291;;UBERON:0005423;;UBERON:0007497
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED []
|comment=
|comment=
|alt_id=UBERON:0004373;;UBERON:XAO_0000006-ZFA_0000051
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0009123
|develops_from=UBERON:0009123
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003051
|is_a=UBERON:0005291 ;;UBERON:0007497 ;;UBERON:0010314 ;;UBERON:0010371
|is_obsolete=
|located_in=
|located_in=
|name=ear vesicle
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0000924
|part_of=UBERON:0000922;;UBERON:0000924
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string
|subset=vertebrate_core
|synonym="auditory vesicle" RELATED [BTO:0002661];;"otic vesicle" EXACT [];;"otocyst" RELATED [];;"OV" RELATED []
|union_of=
|xref=AAO:0011080;;BTO:0002661;;EHDAA2:0001342;;EMAPA:16669;;http://upload.wikimedia.org/wikipedia/commons/2/2d/Gray40.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png;;ncithesaurus:Otic_Vesicle;;SCTID:308792006;;TAO:0000051;;VHOG:0001148;;XAO:0000006;;ZFA:0000051
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:ear vesicle
Namespace:FANTOM
Definition:"The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
Xrefs:
links:

AAO:0011080
BTO:0002661
EHDAA2:0001342
EMAPA:16669
[ Gray40.png Gray40.png]
[ 200px-Gray40.png 200px-Gray40.png]
ncithesaurus:Otic_Vesicle
SCTID:308792006
TAO:0000051
VHOG:0001148
XAO:0000006

ZFA:0000051
Synonyms: "auditory vesicle" RELATED [BTO:0002661]
"otic vesicle" EXACT []
"otocyst" RELATED []
"OV" RELATED []
Alt_id: UBERON:0004373
UBERON:XAO_0000006-ZFA_0000051
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0009123(otic cup)
part_of:UBERON:0000922(embryo),UBERON:0000924(ectoderm)



Children

develops from:UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex)
part of:UBERON:0005641 (otocyst epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_75fc3970308be340c9f348f4c3017776p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_75fc3970308be340c9f348f4c3017776p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_75fc3970308be340c9f348f4c3017776p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_75fc3970308be340c9f348f4c3017776p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_75fc3970308be340c9f348f4c3017776p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_75fc3970308be340c9f348f4c3017776p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_75fc3970308be340c9f348f4c3017776p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_75fc3970308be340c9f348f4c3017776p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_75fc3970308be340c9f348f4c3017776p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_75fc3970308be340c9f348f4c3017776p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_75fc3970308be340c9f348f4c3017776p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_75fc3970308be340c9f348f4c3017776p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_75fc3970308be340c9f348f4c3017776p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_75fc3970308be340c9f348f4c3017776p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_75fc3970308be340c9f348f4c3017776p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_75fc3970308be340c9f348f4c3017776p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_75fc3970308be340c9f348f4c3017776p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_75fc3970308be340c9f348f4c3017776p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_75fc3970308be340c9f348f4c3017776p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_75fc3970308be340c9f348f4c3017776p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_75fc3970308be340c9f348f4c3017776p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_75fc3970308be340c9f348f4c3017776p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_75fc3970308be340c9f348f4c3017776p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_75fc3970308be340c9f348f4c3017776p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_75fc3970308be340c9f348f4c3017776p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_75fc3970308be340c9f348f4c3017776p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_75fc3970308be340c9f348f4c3017776p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_75fc3970308be340c9f348f4c3017776p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_75fc3970308be340c9f348f4c3017776p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_75fc3970308be340c9f348f4c3017776p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_75fc3970308be340c9f348f4c3017776p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_75fc3970308be340c9f348f4c3017776p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_75fc3970308be340c9f348f4c3017776p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_75fc3970308be340c9f348f4c3017776p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_75fc3970308be340c9f348f4c3017776p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_75fc3970308be340c9f348f4c3017776p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_75fc3970308be340c9f348f4c3017776p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_75fc3970308be340c9f348f4c3017776p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_75fc3970308be340c9f348f4c3017776p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_75fc3970308be340c9f348f4c3017776p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_75fc3970308be340c9f348f4c3017776p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_75fc3970308be340c9f348f4c3017776p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_75fc3970308be340c9f348f4c3017776p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_75fc3970308be340c9f348f4c3017776p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_75fc3970308be340c9f348f4c3017776p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_75fc3970308be340c9f348f4c3017776p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_75fc3970308be340c9f348f4c3017776p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_75fc3970308be340c9f348f4c3017776p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_75fc3970308be340c9f348f4c3017776p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_75fc3970308be340c9f348f4c3017776p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_75fc3970308be340c9f348f4c3017776p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_75fc3970308be340c9f348f4c3017776p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_75fc3970308be340c9f348f4c3017776p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_75fc3970308be340c9f348f4c3017776p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_75fc3970308be340c9f348f4c3017776p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_75fc3970308be340c9f348f4c3017776p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_75fc3970308be340c9f348f4c3017776p1@Tmc1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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