FFCP PHASE1:Hg19::chr10:54215063..54215090,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-31bp_to_ENST00000435813,uc001jjs.2_5end | |association_with_transcript=-31bp_to_ENST00000435813,uc001jjs.2_5end | ||
|cluster_id=chr10:54215063..54215090,- | |||
|coexpression_cluster_id=C1315 | |coexpression_cluster_id=C1315 | ||
|description=CAGE_peak_2_at_ENST00000435813_5end,CAGE_peak_2_at_uc001jjs.2_5end | |description=CAGE_peak_2_at_ENST00000435813_5end,CAGE_peak_2_at_uc001jjs.2_5end | ||
|id=chr10:54215063..54215090,- | |id=chr10:54215063..54215090,- | ||
|ontology_enrichment_celltype=CL:0000066!4.00e-29!254;CL:0002076!3.48e-22!43;CL:0000223!1.17e-16!59;CL:0002251!8.90e-15!21;CL:0000076!1.90e-12!62;CL:0000220!2.23e-08!246;CL:0002321!3.41e-08!248;CL:0000622!2.94e-07!5 | |ontology_enrichment_celltype=CL:0000066!4.00e-29!254;CL:0002076!3.48e-22!43;CL:0000223!1.17e-16!59;CL:0002251!8.90e-15!21;CL:0000076!1.90e-12!62;CL:0000220!2.23e-08!246;CL:0002321!3.41e-08!248;CL:0000622!2.94e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002251;2.59e-16;20!CL:0002076;2.29e-15;42!CL:0002231;7.43e-10;3!CL:0002621;4.21e-09;3!CL:0000240;8.05e-08;6!CL:0000311;8.05e-08;6!CL:0000079;8.05e-08;6!CL:0000237;8.05e-08;6!CL:0000076;1.63e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.52e-18,42;CL:0000066,6.35e-18,253;CL:0002251,2.37e-16,20;CL:0000223,1.50e-15,58;CL:0000076,5.64e-13,63;CL:0002231,7.11e-10,3;CL:0002621,3.75e-09,3;CL:0000240,7.76e-08,6;CL:0000311,7.76e-08,6;CL:0000079,7.76e-08,6;CL:0000237,7.76e-08,6;CL:0000036,7.76e-08,6;CL:0000357,7.76e-08,6;CL:0000114,7.76e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000223;1.00e-08;58!CL:0000357;8.05e-08;6!CL:0000114;8.05e-08;6 | |||
|ontology_enrichment_disease=DOID:1749!3.42e-20!14;DOID:305!9.82e-18!106;DOID:0050687!3.30e-15!143;DOID:14566!1.30e-13!239;DOID:162!3.73e-12!235;DOID:7!3.47e-07!39 | |ontology_enrichment_disease=DOID:1749!3.42e-20!14;DOID:305!9.82e-18!106;DOID:0050687!3.30e-15!143;DOID:14566!1.30e-13!239;DOID:162!3.73e-12!235;DOID:7!3.47e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:1749;9.71e-31;14!DOID:299;1.58e-08;25!DOID:5093;1.05e-07;4!DOID:1612;1.05e-07;4!DOID:4074;3.12e-07;2!DOID:4905;3.12e-07;2!DOID:3498;3.12e-07;2!DOID:7;9.81e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.52e-31,14;DOID:305,3.33e-13,106;DOID:14566,4.62e-10,239;DOID:0050687,8.00e-10,143;DOID:162,6.99e-09,235;DOID:7,8.29e-09,39;DOID:299,1.59e-08,25;DOID:5093,1.00e-07,4;DOID:1612,1.00e-07,4;DOID:4074,3.27e-07,2;DOID:4905,3.27e-07,2;DOID:3498,3.27e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000344!3.05e-11!12;UBERON:0004119!3.43e-11!169;UBERON:0000925!3.43e-11!169;UBERON:0006595!3.43e-11!169;UBERON:0003102!3.54e-10!95;UBERON:0001004!5.35e-10!72;UBERON:0003729!1.01e-09!5;UBERON:0001007!1.99e-09!155;UBERON:0001555!1.99e-09!155;UBERON:0007026!1.99e-09!155;UBERON:0000161!2.31e-08!35;UBERON:0003343!2.76e-08!4;UBERON:0004785!2.76e-08!4;UBERON:0005911!1.09e-07!82;UBERON:0000166!3.01e-07!21;UBERON:0002097!4.05e-07!40 | |ontology_enrichment_uberon=UBERON:0000344!3.05e-11!12;UBERON:0004119!3.43e-11!169;UBERON:0000925!3.43e-11!169;UBERON:0006595!3.43e-11!169;UBERON:0003102!3.54e-10!95;UBERON:0001004!5.35e-10!72;UBERON:0003729!1.01e-09!5;UBERON:0001007!1.99e-09!155;UBERON:0001555!1.99e-09!155;UBERON:0007026!1.99e-09!155;UBERON:0000161!2.31e-08!35;UBERON:0003343!2.76e-08!4;UBERON:0004785!2.76e-08!4;UBERON:0005911!1.09e-07!82;UBERON:0000166!3.01e-07!21;UBERON:0002097!4.05e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0000344;1.38e-16;20!UBERON:0003729;6.27e-14;13!UBERON:0003343;1.32e-13;4!UBERON:0004785;1.32e-13;4!UBERON:0003929;2.16e-10;7!UBERON:0001949;4.21e-09;3!UBERON:0000974;4.69e-09;6!UBERON:0003350;4.72e-09;8!UBERON:0004807;3.78e-07;22!UBERON:0000161;4.92e-07;19!UBERON:0000166;4.92e-07;19!UBERON:0000485;6.46e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.28e-16,20;UBERON:0003729,5.75e-14,13;UBERON:0003343,1.28e-13,4;UBERON:0004785,1.28e-13,4;UBERON:0001949,3.75e-09,3;UBERON:0003350,4.41e-09,8;UBERON:0003102,6.48e-09,99;UBERON:0000161,4.04e-08,36;UBERON:0005153,1.82e-07,37 | |||
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| ||
|short_description=p2@ENST00000435813,p2@uc001jjs.2 | |short_description=p2@ENST00000435813,p2@uc001jjs.2 | ||
}} | }} |
Latest revision as of 14:10, 23 July 2015
Short description: | p2@ENST00000435813, p2@uc001jjs.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000435813_5end, CAGE_peak_2_at_uc001jjs.2_5end |
Coexpression cluster: | C1315_mucinous_astrocytoma_malignant_glioblastoma_oral_gastric_medulloblastoma |
Association with transcript: | -31bp_to_ENST00000435813, uc001jjs.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.52e-18 | 42 |
epithelial cell | 6.35e-18 | 253 |
epithelial cell of alimentary canal | 2.37e-16 | 20 |
endodermal cell | 1.50e-15 | 58 |
squamous epithelial cell | 5.64e-13 | 63 |
epithelial cell of prostate | 7.11e-10 | 3 |
gingival epithelial cell | 3.75e-09 | 3 |
stratified squamous epithelial cell | 7.76e-08 | 6 |
keratin accumulating cell | 7.76e-08 | 6 |
stratified epithelial cell | 7.76e-08 | 6 |
keratinizing barrier epithelial cell | 7.76e-08 | 6 |
epithelial fate stem cell | 7.76e-08 | 6 |
stratified epithelial stem cell | 7.76e-08 | 6 |
surface ectodermal cell | 7.76e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.28e-16 | 20 |
mouth mucosa | 5.75e-14 | 13 |
mucosa of oral region | 1.28e-13 | 4 |
respiratory system mucosa | 1.28e-13 | 4 |
gingival epithelium | 3.75e-09 | 3 |
epithelium of mucosa | 4.41e-09 | 8 |
surface structure | 6.48e-09 | 99 |
orifice | 4.04e-08 | 36 |
epithelial bud | 1.82e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.52e-31 | 14 |
carcinoma | 3.33e-13 | 106 |
disease of cellular proliferation | 4.62e-10 | 239 |
cell type cancer | 8.00e-10 | 143 |
cancer | 6.99e-09 | 235 |
disease of anatomical entity | 8.29e-09 | 39 |
adenocarcinoma | 1.59e-08 | 25 |
thoracic cancer | 1.00e-07 | 4 |
breast cancer | 1.00e-07 | 4 |
pancreas adenocarcinoma | 3.27e-07 | 2 |
pancreatic carcinoma | 3.27e-07 | 2 |
pancreatic ductal adenocarcinoma | 3.27e-07 | 2 |