FFCP PHASE1:Hg19::chr12:125054334..125054354,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:125054334..125054354,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_at_chr12:125054334..125054354,- | |description=CAGE_peak_at_chr12:125054334..125054354,- | ||
|id=chr12:125054334..125054354,- | |id=chr12:125054334..125054354,- | ||
|ontology_enrichment_celltype=CL:0002322!2.11e-10!5;CL:0000128!2.74e-10!7;CL:0000126!2.74e-10!7;CL:0000127!2.74e-10!7;CL:0002453!2.74e-10!7;CL:0002319!2.68e-08!25;CL:0000133!1.08e-07!59;CL:0002603!2.45e-07!3;CL:0000095!5.81e-07!17;CL:0000123!5.81e-07!17 | |ontology_enrichment_celltype=CL:0002322!2.11e-10!5;CL:0000128!2.74e-10!7;CL:0000126!2.74e-10!7;CL:0000127!2.74e-10!7;CL:0002453!2.74e-10!7;CL:0002319!2.68e-08!25;CL:0000133!1.08e-07!59;CL:0002603!2.45e-07!3;CL:0000095!5.81e-07!17;CL:0000123!5.81e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0000540;5.91e-17;6!CL:0000404;5.91e-17;6!CL:0002603;1.05e-15;3!CL:0002319;2.57e-14;25!CL:0000128;3.05e-07;7!CL:0000126;3.05e-07;7!CL:0000127;3.05e-07;7!CL:0002575;9.27e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.45e-17,6;CL:0000031,5.45e-17,6;CL:0000404,5.45e-17,6;CL:0002603,8.44e-16,3;CL:0002319,2.31e-14,25;CL:0000047,6.73e-13,8;CL:0000133,3.39e-08,59;CL:0000128,2.77e-07,7;CL:0000126,2.77e-07,7;CL:0000127,2.77e-07,7;CL:0002453,2.77e-07,7 | |||
|ontology_enrichment_development_v019=CL:0000031;5.91e-17;6!UBERON:0005754;1.48e-12;1!UBERON:0007297;6.61e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.45e-19!82;UBERON:0005743!7.82e-19!86;UBERON:0000073!1.42e-18!94;UBERON:0001016!1.42e-18!94;UBERON:0007023!1.69e-16!115;UBERON:0003075!2.80e-16!86;UBERON:0007284!2.80e-16!86;UBERON:0002346!3.43e-16!90;UBERON:0000955!6.02e-15!69;UBERON:0006238!6.02e-15!69;UBERON:0002616!7.85e-15!59;UBERON:0001049!2.23e-14!57;UBERON:0005068!2.23e-14!57;UBERON:0006241!2.23e-14!57;UBERON:0007135!2.23e-14!57;UBERON:0003076!1.50e-13!15;UBERON:0003057!1.50e-13!15;UBERON:0000924!1.61e-12!173;UBERON:0006601!1.61e-12!173;UBERON:0004121!2.18e-12!169;UBERON:0004733!1.66e-11!12;UBERON:0002028!1.66e-11!12;UBERON:0007277!1.66e-11!12;UBERON:0004732!1.81e-10!13;UBERON:0000033!1.20e-09!123;UBERON:0000153!8.57e-09!129;UBERON:0007811!8.57e-09!129;UBERON:0003135!1.86e-08!11;UBERON:0002298!1.32e-07!8;UBERON:0003056!2.29e-07!61;UBERON:0002680!2.42e-07!9;UBERON:0001895!2.42e-07!9;UBERON:0010092!2.42e-07!9;UBERON:0006947!2.77e-07!3;UBERON:0004054!2.77e-07!3;UBERON:0002200!3.62e-07!11;UBERON:0006876!3.62e-07!11;UBERON:0002020!7.77e-07!34;UBERON:0003528!7.77e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;8.40e-17;11!UBERON:0006947;5.18e-16;3!UBERON:0004054;5.18e-16;3!UBERON:0000473;2.07e-13;8!UBERON:0001000;9.92e-13;1!UBERON:0005352;9.92e-13;1!UBERON:0000998;1.48e-12;1!UBERON:0006868;1.48e-12;1!UBERON:0002134;2.91e-12;1!UBERON:0005208;2.91e-12;1!UBERON:0004145;2.91e-12;1!UBERON:0005946;2.91e-12;1!UBERON:0005965;2.91e-12;1!UBERON:0002078;2.91e-12;1!UBERON:0005904;3.00e-12;4!UBERON:0003101;1.65e-08;22!UBERON:0000079;1.65e-08;22!UBERON:0002037;2.61e-08;6!UBERON:0002081;9.27e-07;2!UBERON:0002133;9.27e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,8.58e-17,11;UBERON:0006947,5.38e-16,3;UBERON:0004054,5.38e-16,3;UBERON:0000473,2.11e-13,8;UBERON:0001000,9.92e-13,1;UBERON:0005352,9.92e-13,1;UBERON:0000998,1.57e-12,1;UBERON:0006868,1.57e-12,1;UBERON:0002134,1.96e-12,1;UBERON:0005208,1.96e-12,1;UBERON:0005946,1.96e-12,1;UBERON:0005965,1.96e-12,1;UBERON:0002078,1.96e-12,1;UBERON:0005904,3.09e-12,4;UBERON:0003101,1.67e-08,22;UBERON:0000079,1.67e-08,22;UBERON:0002037,2.34e-08,6;UBERON:0006215,2.34e-08,6;UBERON:0002081,7.61e-07,2;UBERON:0002133,7.61e-07,2;UBERON:0010227,7.61e-07,2 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,0,0,0,0,2.21617904538218,1.42800483870977,0.626909442956176,0.286235987131057,0.958120975510189,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,11.395179568301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0.975789649036763,0.662648841607426,1.04574548582567,0.414644220061482,0.504641701751257,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783204629850962,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41254749960294,0,0,0,0,0.154048617114644,0.307007349452259,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,1.68900326502395,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0.134802265961354,0,0,0,0,0,5.12959723704208,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,1.43574604915363,0,0.858452096273142,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,1.28602518772015,1.2378549293751,1.24632101408756,0,0,0,0,0,0.209818352539992,0,0,0,0,0.662091970365432,0.25426853765475,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0.106787412567695,0.157204305099666,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0.573409195690071,0.221858103073705,0.248385611765534,0.415045904808692,0,0,0,0,0,0.144921028610825,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0.54604819096007,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.500335809236594,3.31828584638726,4.41717416398876,0,0,0,0,0,0,0,0,2.11693525095465,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.109940516745429,0,0.154348316215889,0.437119121007915,0,0.245148321753905,0,0.588925401344836,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0.252332849670158,0.546327859818478,1.14028650910293,0.509944148709909,0,0.0918948995348449,0,19.8540189331787,40.9985119138953,0.829169439458779,0.103432995861895,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.286888821570705,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,0,0,0,0,2.21617904538218,1.42800483870977,0.626909442956176,0.286235987131057,0.958120975510189,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.175669571386252,11.395179568301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0.975789649036763,0.662648841607426,1.04574548582567,0.414644220061482,0.504641701751257,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783204629850962,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41254749960294,0,0,0,0,0.154048617114644,0.307007349452259,0,0.214840489736547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0.54907405947211,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,1.68900326502395,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.60298219312704,0,0,0,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0.134802265961354,0,0,0,0,0,5.12959723704208,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,1.43574604915363,0,0.858452096273142,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,1.28602518772015,1.2378549293751,1.24632101408756,0,0,0,0,0,0.209818352539992,0,0,0,0,0.662091970365432,0.25426853765475,0,0,0,0,0,0,0,0,0,0.258565912723101,0.39669780522807,0,0,0.106787412567695,0.157204305099666,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0.573409195690071,0.221858103073705,0.248385611765534,0.415045904808692,0,0,0,0,0,0.144921028610825,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0.54604819096007,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.500335809236594,3.31828584638726,4.41717416398876,0,0,0,0,0,0,0,0,2.11693525095465,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.109940516745429,0,0.154348316215889,0.437119121007915,0,0.245148321753905,0,0.588925401344836,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0.252332849670158,0.546327859818478,1.14028650910293,0.509944148709909,0,0.0918948995348449,0,19.8540189331787,40.9985119138953,0.829169439458779,0.103432995861895,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.286888821570705,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:125054334..125054354,- | |short_description=p@chr12:125054334..125054354,- | ||
}} | }} |
Latest revision as of 06:26, 24 July 2015
Short description: | p@chr12:125054334..125054354, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:125054334..125054354, - |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.45e-17 | 6 |
neuroblast | 5.45e-17 | 6 |
electrically signaling cell | 5.45e-17 | 6 |
astrocyte of the cerebellum | 8.44e-16 | 3 |
neural cell | 2.31e-14 | 25 |
neuronal stem cell | 6.73e-13 | 8 |
neurectodermal cell | 3.39e-08 | 59 |
oligodendrocyte | 2.77e-07 | 7 |
macroglial cell | 2.77e-07 | 7 |
astrocyte | 2.77e-07 | 7 |
oligodendrocyte precursor cell | 2.77e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 8.58e-17 | 11 |
male genital duct | 5.38e-16 | 3 |
internal male genitalia | 5.38e-16 | 3 |
testis | 2.11e-13 | 8 |
vas deferens | 9.92e-13 | 1 |
spermatic cord | 9.92e-13 | 1 |
seminal vesicle | 1.57e-12 | 1 |
seminal fluid secreting gland | 1.57e-12 | 1 |
tricuspid valve | 1.96e-12 | 1 |
right atrium valve | 1.96e-12 | 1 |
outflow tract of atrium | 1.96e-12 | 1 |
outflow part of right atrium | 1.96e-12 | 1 |
right cardiac atrium | 1.96e-12 | 1 |
duct of male reproductive system | 3.09e-12 | 4 |
male organism | 1.67e-08 | 22 |
male reproductive system | 1.67e-08 | 22 |
cerebellum | 2.34e-08 | 6 |
rhombic lip | 2.34e-08 | 6 |
cardiac atrium | 7.61e-07 | 2 |
atrioventricular valve | 7.61e-07 | 2 |
future cardiac atrium | 7.61e-07 | 2 |