FFCP PHASE1:Hg19::chr12:20975472..20975489,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:20975472..20975489,+ | |||
|description=CAGE_peak_at_chr12:20975472..20975489,+ | |description=CAGE_peak_at_chr12:20975472..20975489,+ | ||
|id=chr12:20975472..20975489,+ | |id=chr12:20975472..20975489,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.30e-28!254;CL:0002076!1.48e-08!43;CL:0000223!2.09e-08!59;CL:0002178!3.04e-08!3;CL:0002150!2.47e-07!3;CL:0000861!2.47e-07!3;CL:0002149!3.22e-07!6;CL:0002255!3.22e-07!6;CL:0000076!8.23e-07!62 | |ontology_enrichment_celltype=CL:0000066!4.30e-28!254;CL:0002076!1.48e-08!43;CL:0000223!2.09e-08!59;CL:0002178!3.04e-08!3;CL:0002150!2.47e-07!3;CL:0000861!2.47e-07!3;CL:0002149!3.22e-07!6;CL:0002255!3.22e-07!6;CL:0000076!8.23e-07!62 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.35e-22,253;CL:0000076,9.88e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.41e-20;29!UBERON:0006595;2.75e-09;86 | |||
|ontology_enrichment_disease=DOID:305!2.51e-67!106;DOID:0050687!3.33e-56!143;DOID:14566!5.89e-36!239;DOID:162!9.75e-36!235;DOID:1749!4.46e-21!14;DOID:299!9.42e-18!25;DOID:3001!3.22e-07!6;DOID:170!5.18e-07!6;DOID:3493!5.95e-07!2 | |ontology_enrichment_disease=DOID:305!2.51e-67!106;DOID:0050687!3.33e-56!143;DOID:14566!5.89e-36!239;DOID:162!9.75e-36!235;DOID:1749!4.46e-21!14;DOID:299!9.42e-18!25;DOID:3001!3.22e-07!6;DOID:170!5.18e-07!6;DOID:3493!5.95e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.79e-27;14!DOID:305;4.85e-14;106!DOID:299;2.60e-12;25!DOID:3493;6.15e-10;2!DOID:0050687;2.34e-09;143 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.17e-60,106;DOID:0050687,1.03e-46,143;DOID:162,3.87e-29,235;DOID:14566,2.45e-28,239;DOID:1749,2.70e-27,14;DOID:299,2.41e-12,25;DOID:3493,6.29e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.03e-22!9;UBERON:0001007!8.94e-15!155;UBERON:0001555!8.94e-15!155;UBERON:0007026!8.94e-15!155;UBERON:0004119!1.03e-13!169;UBERON:0000925!1.03e-13!169;UBERON:0006595!1.03e-13!169;UBERON:0001557!1.10e-11!19;UBERON:0004921!1.17e-11!129;UBERON:0004185!1.17e-11!129;UBERON:0000077!8.18e-11!130;UBERON:0008947!2.61e-10!38;UBERON:0003258!2.61e-10!38;UBERON:0001041!5.84e-10!98;UBERON:0002294!6.63e-10!7;UBERON:0001173!6.63e-10!7;UBERON:0004912!6.63e-10!7;UBERON:0000344!1.14e-09!12;UBERON:0000072!4.01e-09!46;UBERON:0000065!1.86e-07!53;UBERON:0001004!2.82e-07!72;UBERON:0002394!3.43e-07!4;UBERON:0003928!3.43e-07!4;UBERON:0003343!8.54e-07!4;UBERON:0004785!8.54e-07!4 | |ontology_enrichment_uberon=UBERON:0001737!2.03e-22!9;UBERON:0001007!8.94e-15!155;UBERON:0001555!8.94e-15!155;UBERON:0007026!8.94e-15!155;UBERON:0004119!1.03e-13!169;UBERON:0000925!1.03e-13!169;UBERON:0006595!1.03e-13!169;UBERON:0001557!1.10e-11!19;UBERON:0004921!1.17e-11!129;UBERON:0004185!1.17e-11!129;UBERON:0000077!8.18e-11!130;UBERON:0008947!2.61e-10!38;UBERON:0003258!2.61e-10!38;UBERON:0001041!5.84e-10!98;UBERON:0002294!6.63e-10!7;UBERON:0001173!6.63e-10!7;UBERON:0004912!6.63e-10!7;UBERON:0000344!1.14e-09!12;UBERON:0000072!4.01e-09!46;UBERON:0000065!1.86e-07!53;UBERON:0001004!2.82e-07!72;UBERON:0002394!3.43e-07!4;UBERON:0003928!3.43e-07!4;UBERON:0003343!8.54e-07!4;UBERON:0004785!8.54e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.35e-34;9!UBERON:0001557;4.35e-34;9!UBERON:0000072;1.10e-12;37!UBERON:0000065;7.73e-11;44!UBERON:0002394;1.60e-10;4!UBERON:0003928;1.60e-10;4!UBERON:0002294;3.26e-10;7!UBERON:0001173;3.26e-10;7!UBERON:0003343;6.55e-10;4!UBERON:0004785;6.55e-10;4!UBERON:0001004;2.64e-08;65!UBERON:0000058;3.28e-07;10!UBERON:0000974;9.74e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.00e-34,9;UBERON:0001557,3.03e-15,19;UBERON:0008947,5.75e-15,38;UBERON:0003258,5.75e-15,38;UBERON:0001007,1.44e-12,145;UBERON:0001555,1.44e-12,145;UBERON:0007026,1.44e-12,145;UBERON:0004119,6.01e-12,160;UBERON:0000925,6.01e-12,160;UBERON:0006595,6.01e-12,160;UBERON:0000072,1.46e-11,47;UBERON:0001004,3.31e-10,74;UBERON:0004921,5.29e-10,118;UBERON:0003343,6.87e-10,4;UBERON:0004785,6.87e-10,4;UBERON:0000065,1.04e-09,54;UBERON:0001041,1.38e-09,87;UBERON:0002294,6.26e-08,9;UBERON:0001173,6.26e-08,9;UBERON:0004912,6.26e-08,9;UBERON:0002394,3.98e-07,6;UBERON:0003928,3.98e-07,6 | |||
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| ||
|short_description=p@chr12:20975472..20975489,+ | |short_description=p@chr12:20975472..20975489,+ | ||
}} | }} |
Latest revision as of 07:28, 24 July 2015
Short description: | p@chr12:20975472..20975489, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:20975472..20975489, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.35e-22 | 253 |
squamous epithelial cell | 9.88e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.00e-34 | 9 |
upper respiratory tract | 3.03e-15 | 19 |
respiratory primordium | 5.75e-15 | 38 |
endoderm of foregut | 5.75e-15 | 38 |
digestive system | 1.44e-12 | 145 |
digestive tract | 1.44e-12 | 145 |
primitive gut | 1.44e-12 | 145 |
endoderm-derived structure | 6.01e-12 | 160 |
endoderm | 6.01e-12 | 160 |
presumptive endoderm | 6.01e-12 | 160 |
segment of respiratory tract | 1.46e-11 | 47 |
respiratory system | 3.31e-10 | 74 |
subdivision of digestive tract | 5.29e-10 | 118 |
mucosa of oral region | 6.87e-10 | 4 |
respiratory system mucosa | 6.87e-10 | 4 |
respiratory tract | 1.04e-09 | 54 |
foregut | 1.38e-09 | 87 |
biliary system | 6.26e-08 | 9 |
biliary tree | 6.26e-08 | 9 |
biliary bud | 6.26e-08 | 9 |
bile duct | 3.98e-07 | 6 |
digestive system duct | 3.98e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.17e-60 | 106 |
cell type cancer | 1.03e-46 | 143 |
cancer | 3.87e-29 | 235 |
disease of cellular proliferation | 2.45e-28 | 239 |
squamous cell carcinoma | 2.70e-27 | 14 |
adenocarcinoma | 2.41e-12 | 25 |
signet ring cell adenocarcinoma | 6.29e-10 | 2 |