FFCP PHASE1:Hg19::chr12:52473515..52473526,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=35bp_to_ENST00000546390,uc009zme.1_5end | |association_with_transcript=35bp_to_ENST00000546390,uc009zme.1_5end | ||
|cluster_id=chr12:52473515..52473526,+ | |||
|description=CAGE_peak_3_at_ENST00000546390_5end,CAGE_peak_3_at_uc009zme.1_5end | |description=CAGE_peak_3_at_ENST00000546390_5end,CAGE_peak_3_at_uc009zme.1_5end | ||
|id=chr12:52473515..52473526,+ | |id=chr12:52473515..52473526,+ | ||
|ontology_enrichment_celltype=CL:0002504!5.70e-19!3;CL:1000279!5.70e-19!3;CL:1000280!5.70e-19!3;CL:0000214!7.20e-09!3;CL:0002622!8.09e-09!3;CL:0002598!5.14e-07!1;CL:0002574!8.18e-07!1 | |ontology_enrichment_celltype=CL:0002504!5.70e-19!3;CL:1000279!5.70e-19!3;CL:1000280!5.70e-19!3;CL:0000214!7.20e-09!3;CL:0002622!8.09e-09!3;CL:0002598!5.14e-07!1;CL:0002574!8.18e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002504;8.98e-131;3!CL:1000279;8.98e-131;3!CL:1000280;8.98e-131;3!CL:0000192;8.27e-08;43!CL:0000187;7.96e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,8.98e-131,3;CL:1000279,8.98e-131,3;CL:1000280,8.98e-131,3;CL:0000192,1.77e-10,43;CL:0000514,1.77e-10,43;CL:0000187,1.83e-08,55;CL:0000680,4.33e-08,58;CL:0000056,4.33e-08,58;CL:0000355,4.33e-08,58;CL:0000393,9.44e-08,61;CL:0000211,9.44e-08,61 | |||
|ontology_enrichment_development_v019=CL:0000514;8.27e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003937!3.96e-12!12;UBERON:0005399!3.96e-12!12;UBERON:0000162!2.51e-10!14;UBERON:0001353!2.51e-10!14;UBERON:0000163!2.51e-10!14;UBERON:0006866!2.51e-10!14;UBERON:0000164!2.51e-10!14;UBERON:0000931!2.51e-10!14;UBERON:0004122!1.28e-09!15;UBERON:0004921!2.27e-09!129;UBERON:0004185!2.27e-09!129;UBERON:0003101!4.13e-09!22;UBERON:0000079!4.13e-09!22;UBERON:0006915!7.20e-09!3;UBERON:0002018!7.20e-09!3;UBERON:0002217!7.20e-09!3;UBERON:0007616!7.20e-09!3;UBERON:0002367!8.73e-09!11;UBERON:0010147!8.73e-09!11;UBERON:0009846!8.73e-09!11;UBERON:0003353!8.73e-09!11;UBERON:0004902!8.73e-09!11;UBERON:0003820!8.73e-09!11;UBERON:0009847!8.73e-09!11;UBERON:0001046!1.54e-07!19;UBERON:0004119!2.69e-07!169;UBERON:0000925!2.69e-07!169;UBERON:0006595!2.69e-07!169;UBERON:0006554!2.97e-07!44;UBERON:0001007!3.14e-07!155;UBERON:0001555!3.14e-07!155;UBERON:0007026!3.14e-07!155;UBERON:0000998!3.60e-07!1;UBERON:0006868!3.60e-07!1;UBERON:0005409!4.02e-07!35;UBERON:0001008!4.58e-07!45;UBERON:0000160!5.25e-07!27;UBERON:0002372!5.78e-07!1;UBERON:0001961!5.78e-07!1;UBERON:0001744!5.78e-07!1;UBERON:0001735!5.78e-07!1;UBERON:0002038!6.12e-07!1;UBERON:0009661!6.12e-07!1;UBERON:0003064!6.82e-07!37;UBERON:0007023!8.27e-07!115 | |ontology_enrichment_uberon=UBERON:0003937!3.96e-12!12;UBERON:0005399!3.96e-12!12;UBERON:0000162!2.51e-10!14;UBERON:0001353!2.51e-10!14;UBERON:0000163!2.51e-10!14;UBERON:0006866!2.51e-10!14;UBERON:0000164!2.51e-10!14;UBERON:0000931!2.51e-10!14;UBERON:0004122!1.28e-09!15;UBERON:0004921!2.27e-09!129;UBERON:0004185!2.27e-09!129;UBERON:0003101!4.13e-09!22;UBERON:0000079!4.13e-09!22;UBERON:0006915!7.20e-09!3;UBERON:0002018!7.20e-09!3;UBERON:0002217!7.20e-09!3;UBERON:0007616!7.20e-09!3;UBERON:0002367!8.73e-09!11;UBERON:0010147!8.73e-09!11;UBERON:0009846!8.73e-09!11;UBERON:0003353!8.73e-09!11;UBERON:0004902!8.73e-09!11;UBERON:0003820!8.73e-09!11;UBERON:0009847!8.73e-09!11;UBERON:0001046!1.54e-07!19;UBERON:0004119!2.69e-07!169;UBERON:0000925!2.69e-07!169;UBERON:0006595!2.69e-07!169;UBERON:0006554!2.97e-07!44;UBERON:0001007!3.14e-07!155;UBERON:0001555!3.14e-07!155;UBERON:0007026!3.14e-07!155;UBERON:0000998!3.60e-07!1;UBERON:0006868!3.60e-07!1;UBERON:0005409!4.02e-07!35;UBERON:0001008!4.58e-07!45;UBERON:0000160!5.25e-07!27;UBERON:0002372!5.78e-07!1;UBERON:0001961!5.78e-07!1;UBERON:0001744!5.78e-07!1;UBERON:0001735!5.78e-07!1;UBERON:0002038!6.12e-07!1;UBERON:0009661!6.12e-07!1;UBERON:0003064!6.82e-07!37;UBERON:0007023!8.27e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001155;9.75e-45;9!UBERON:0000059;6.80e-37;11!UBERON:0001135;1.82e-27;15!UBERON:0000160;3.88e-23;17!UBERON:0005409;2.02e-18;22!UBERON:0004921;1.83e-13;33!UBERON:0002385;1.83e-13;31!UBERON:0001015;1.83e-13;31!UBERON:0000383;1.83e-13;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001155,9.75e-45,9;UBERON:0000059,6.80e-37,11;UBERON:0001135,1.82e-27,15;UBERON:0000160,3.88e-23,17;UBERON:0005409,1.86e-16,25;UBERON:0001134,1.20e-07,62;UBERON:0002036,1.20e-07,62;UBERON:0003082,1.20e-07,62;UBERON:0002385,1.91e-07,64;UBERON:0001015,1.91e-07,64;UBERON:0000383,1.91e-07,64;UBERON:0002329,7.93e-07,71;UBERON:0003059,7.93e-07,71;UBERON:0007282,7.93e-07,71;UBERON:0004290,7.93e-07,71;UBERON:0009618,7.93e-07,71;UBERON:0003077,9.51e-07,72;UBERON:0007285,9.51e-07,72 | |||
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|short_description=p3@ENST00000546390,p3@uc009zme.1 | |short_description=p3@ENST00000546390,p3@uc009zme.1 | ||
}} | }} |
Latest revision as of 09:28, 24 July 2015
Short description: | p3@ENST00000546390, p3@uc009zme.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ENST00000546390_5end, CAGE_peak_3_at_uc009zme.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_ENST00000546390, uc009zme.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 8.98e-131 | 3 |
smooth muscle cell of large intestine | 8.98e-131 | 3 |
smooth muscle cell of colon | 8.98e-131 | 3 |
smooth muscle cell | 1.77e-10 | 43 |
smooth muscle myoblast | 1.77e-10 | 43 |
muscle cell | 1.83e-08 | 55 |
muscle precursor cell | 4.33e-08 | 58 |
myoblast | 4.33e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.33e-08 | 58 |
electrically responsive cell | 9.44e-08 | 61 |
electrically active cell | 9.44e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
colon | 9.75e-45 | 9 |
large intestine | 6.80e-37 | 11 |
smooth muscle tissue | 1.82e-27 | 15 |
intestine | 3.88e-23 | 17 |
gastrointestinal system | 1.86e-16 | 25 |
skeletal muscle tissue | 1.20e-07 | 62 |
striated muscle tissue | 1.20e-07 | 62 |
myotome | 1.20e-07 | 62 |
muscle tissue | 1.91e-07 | 64 |
musculature | 1.91e-07 | 64 |
musculature of body | 1.91e-07 | 64 |
somite | 7.93e-07 | 71 |
presomitic mesoderm | 7.93e-07 | 71 |
presumptive segmental plate | 7.93e-07 | 71 |
dermomyotome | 7.93e-07 | 71 |
trunk paraxial mesoderm | 7.93e-07 | 71 |
paraxial mesoderm | 9.51e-07 | 72 |
presumptive paraxial mesoderm | 9.51e-07 | 72 |