FFCP PHASE1:Hg19::chr12:52911872..52911905,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52911872..52911905,+ | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_at_chr12:52911872..52911905,+ | |description=CAGE_peak_at_chr12:52911872..52911905,+ | ||
|id=chr12:52911872..52911905,+ | |id=chr12:52911872..52911905,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.22e-26!43;CL:0000223!1.10e-18!59;CL:0000066!9.41e-17!254;CL:0002251!2.84e-16!21;CL:0002159!1.11e-15!13;CL:0002368!2.56e-15!13;CL:0000622!1.30e-10!5;CL:0000076!3.18e-09!62;CL:0002202!9.31e-09!9;CL:0002632!9.31e-09!9;CL:0000154!9.31e-09!6;CL:0002077!2.91e-08!33;CL:0002328!7.94e-08!3;CL:0000068!1.72e-07!3;CL:0000069!1.72e-07!3;CL:0000307!1.72e-07!3;CL:0000377!1.72e-07!3;CL:0002166!2.91e-07!3;CL:0002621!3.04e-07!3;CL:0002623!3.58e-07!3;CL:0000362!6.28e-07!8 | |ontology_enrichment_celltype=CL:0002076!1.22e-26!43;CL:0000223!1.10e-18!59;CL:0000066!9.41e-17!254;CL:0002251!2.84e-16!21;CL:0002159!1.11e-15!13;CL:0002368!2.56e-15!13;CL:0000622!1.30e-10!5;CL:0000076!3.18e-09!62;CL:0002202!9.31e-09!9;CL:0002632!9.31e-09!9;CL:0000154!9.31e-09!6;CL:0002077!2.91e-08!33;CL:0002328!7.94e-08!3;CL:0000068!1.72e-07!3;CL:0000069!1.72e-07!3;CL:0000307!1.72e-07!3;CL:0000377!1.72e-07!3;CL:0002166!2.91e-07!3;CL:0002621!3.04e-07!3;CL:0002623!3.58e-07!3;CL:0000362!6.28e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.60e-29;42!CL:0002368;2.12e-28;13!CL:0002159;2.71e-22;14!CL:0002202;6.50e-16;9!CL:0002632;6.50e-16;9!CL:0002251;1.82e-14;20!CL:0002328;2.74e-13;3!CL:0000307;1.14e-12;3!CL:0002166;2.65e-12;3!CL:0002621;3.41e-12;3!CL:0002077;4.34e-12;34!CL:0000240;8.78e-12;6!CL:0000311;8.78e-12;6!CL:0000079;8.78e-12;6!CL:0000237;8.78e-12;6!CL:0002327;3.83e-10;4!CL:0000575;1.57e-09;2!CL:0000244;2.17e-09;4!CL:0000731;2.17e-09;4!CL:0000312;2.18e-08;5!CL:0000622;8.16e-08;5!CL:0000362;1.07e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.35e-36,42;CL:0002368,2.03e-28,13;CL:0000223,9.39e-25,58;CL:0002159,2.89e-22,14;CL:0000066,1.15e-19,253;CL:0002202,5.94e-16,9;CL:0002632,5.94e-16,9;CL:0002251,1.78e-14,20;CL:0002077,2.39e-14,34;CL:0002328,2.52e-13,3;CL:0000068,1.07e-12,3;CL:0000069,1.07e-12,3;CL:0000307,1.07e-12,3;CL:0000377,1.07e-12,3;CL:0002166,2.87e-12,3;CL:0002621,3.10e-12,3;CL:0000240,9.02e-12,6;CL:0000311,9.02e-12,6;CL:0000079,9.02e-12,6;CL:0000237,9.02e-12,6;CL:0000036,9.02e-12,6;CL:0000357,9.02e-12,6;CL:0000114,9.02e-12,6;CL:0002327,4.01e-10,4;CL:0000575,1.47e-09,2;CL:0000244,2.23e-09,4;CL:0000731,2.23e-09,4;CL:0002321,2.68e-09,250;CL:0000312,2.21e-08,5;CL:0000622,8.35e-08,5;CL:0000362,1.11e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.13e-13;58!CL:0000377;1.14e-12;3!CL:0000357;8.78e-12;6!CL:0000114;8.78e-12;6 | |||
|ontology_enrichment_disease=DOID:1749!3.05e-15!14 | |ontology_enrichment_disease=DOID:1749!3.05e-15!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!2.63e-18!21;UBERON:0000153!3.30e-16!129;UBERON:0007811!3.30e-16!129;UBERON:0001004!9.84e-16!72;UBERON:0000165!7.65e-15!28;UBERON:0000930!7.65e-15!28;UBERON:0000033!1.40e-14!123;UBERON:0000161!3.27e-14!35;UBERON:0004121!3.77e-14!169;UBERON:0000924!1.54e-13!173;UBERON:0006601!1.54e-13!173;UBERON:0001444!1.63e-10!48;UBERON:0003729!1.82e-10!5;UBERON:0004119!2.39e-10!169;UBERON:0000925!2.39e-10!169;UBERON:0006595!2.39e-10!169;UBERON:0000064!1.76e-09!219;UBERON:0003102!9.66e-09!95;UBERON:0001869!1.30e-08!32;UBERON:0000974!1.44e-08!10;UBERON:0001044!2.04e-08!6;UBERON:0003293!2.04e-08!6;UBERON:0003294!2.04e-08!6;UBERON:0010047!2.04e-08!6;UBERON:0000167!2.04e-08!6;UBERON:0003343!2.18e-08!4;UBERON:0004785!2.18e-08!4;UBERON:0002780!4.10e-08!41;UBERON:0001890!4.10e-08!41;UBERON:0006240!4.10e-08!41;UBERON:0001893!6.28e-08!34;UBERON:0003080!7.77e-08!42;UBERON:0004815!7.94e-08!3;UBERON:0002031!7.94e-08!3;UBERON:0000065!1.00e-07!53;UBERON:0000344!2.69e-07!12;UBERON:0000078!2.86e-07!18;UBERON:0001949!3.04e-07!3;UBERON:0002420!3.81e-07!9;UBERON:0007245!3.81e-07!9;UBERON:0010009!3.81e-07!9;UBERON:0010011!3.81e-07!9;UBERON:0000454!3.81e-07!9;UBERON:0002791!3.83e-07!33;UBERON:0000365!6.11e-07!5;UBERON:0007023!6.61e-07!115;UBERON:0002020!7.45e-07!34;UBERON:0003528!7.45e-07!34;UBERON:0007196!7.59e-07!14;UBERON:0001558!7.59e-07!14;UBERON:0003056!9.00e-07!61 | |ontology_enrichment_uberon=UBERON:0000166!2.63e-18!21;UBERON:0000153!3.30e-16!129;UBERON:0007811!3.30e-16!129;UBERON:0001004!9.84e-16!72;UBERON:0000165!7.65e-15!28;UBERON:0000930!7.65e-15!28;UBERON:0000033!1.40e-14!123;UBERON:0000161!3.27e-14!35;UBERON:0004121!3.77e-14!169;UBERON:0000924!1.54e-13!173;UBERON:0006601!1.54e-13!173;UBERON:0001444!1.63e-10!48;UBERON:0003729!1.82e-10!5;UBERON:0004119!2.39e-10!169;UBERON:0000925!2.39e-10!169;UBERON:0006595!2.39e-10!169;UBERON:0000064!1.76e-09!219;UBERON:0003102!9.66e-09!95;UBERON:0001869!1.30e-08!32;UBERON:0000974!1.44e-08!10;UBERON:0001044!2.04e-08!6;UBERON:0003293!2.04e-08!6;UBERON:0003294!2.04e-08!6;UBERON:0010047!2.04e-08!6;UBERON:0000167!2.04e-08!6;UBERON:0003343!2.18e-08!4;UBERON:0004785!2.18e-08!4;UBERON:0002780!4.10e-08!41;UBERON:0001890!4.10e-08!41;UBERON:0006240!4.10e-08!41;UBERON:0001893!6.28e-08!34;UBERON:0003080!7.77e-08!42;UBERON:0004815!7.94e-08!3;UBERON:0002031!7.94e-08!3;UBERON:0000065!1.00e-07!53;UBERON:0000344!2.69e-07!12;UBERON:0000078!2.86e-07!18;UBERON:0001949!3.04e-07!3;UBERON:0002420!3.81e-07!9;UBERON:0007245!3.81e-07!9;UBERON:0010009!3.81e-07!9;UBERON:0010011!3.81e-07!9;UBERON:0000454!3.81e-07!9;UBERON:0002791!3.83e-07!33;UBERON:0000365!6.11e-07!5;UBERON:0007023!6.61e-07!115;UBERON:0002020!7.45e-07!34;UBERON:0003528!7.45e-07!34;UBERON:0007196!7.59e-07!14;UBERON:0001558!7.59e-07!14;UBERON:0003056!9.00e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.74e-13;3!UBERON:0002031;2.74e-13;3!UBERON:0001949;3.41e-12;3!UBERON:0000486;4.21e-11;12!UBERON:0003729;2.50e-10;13!UBERON:0001911;3.83e-10;4!UBERON:0000165;8.32e-10;28!UBERON:0001708;2.43e-09;4!UBERON:0008895;2.43e-09;4!UBERON:0007196;2.86e-09;15!UBERON:0001558;2.86e-09;15!UBERON:0000161;3.51e-09;19!UBERON:0000166;3.51e-09;19!UBERON:0002185;3.93e-08;5!UBERON:0000365;1.36e-07;5!UBERON:0011159;1.48e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.52e-13,3;UBERON:0002031,2.52e-13,3;UBERON:0001004,8.56e-13,74;UBERON:0003102,1.06e-12,99;UBERON:0001949,3.10e-12,3;UBERON:0004119,3.45e-11,160;UBERON:0000925,3.45e-11,160;UBERON:0006595,3.45e-11,160;UBERON:0000153,8.20e-11,62;UBERON:0007811,8.20e-11,62;UBERON:0000033,1.07e-10,56;UBERON:0003729,2.42e-10,13;UBERON:0000166,3.95e-10,22;UBERON:0001911,4.01e-10,4;UBERON:0005333,4.01e-10,4;UBERON:0008425,4.01e-10,4;UBERON:0005311,4.01e-10,4;UBERON:0000165,1.96e-09,29;UBERON:0000930,1.96e-09,29;UBERON:0001708,2.58e-09,4;UBERON:0008895,2.58e-09,4;UBERON:0007196,2.71e-09,15;UBERON:0001558,2.71e-09,15;UBERON:0000161,5.99e-09,36;UBERON:0002185,3.75e-08,5;UBERON:0001444,1.26e-07,49;UBERON:0000365,1.39e-07,5;UBERON:0011159,1.55e-07,5;UBERON:0005157,6.97e-07,47 | |||
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|short_description=p@chr12:52911872..52911905,+ | |short_description=p@chr12:52911872..52911905,+ | ||
}} | }} |
Latest revision as of 09:37, 24 July 2015
Short description: | p@chr12:52911872..52911905, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52911872..52911905, + |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.52e-13 | 3 |
epithelium of bronchus | 2.52e-13 | 3 |
respiratory system | 8.56e-13 | 74 |
surface structure | 1.06e-12 | 99 |
gingival epithelium | 3.10e-12 | 3 |
endoderm-derived structure | 3.45e-11 | 160 |
endoderm | 3.45e-11 | 160 |
presumptive endoderm | 3.45e-11 | 160 |
anterior region of body | 8.20e-11 | 62 |
craniocervical region | 8.20e-11 | 62 |
head | 1.07e-10 | 56 |
mouth mucosa | 2.42e-10 | 13 |
oral opening | 3.95e-10 | 22 |
mammary gland | 4.01e-10 | 4 |
mammary bud | 4.01e-10 | 4 |
mammary ridge | 4.01e-10 | 4 |
mammary placode | 4.01e-10 | 4 |
mouth | 1.96e-09 | 29 |
stomodeum | 1.96e-09 | 29 |
jaw skeleton | 2.58e-09 | 4 |
splanchnocranium | 2.58e-09 | 4 |
tracheobronchial tree | 2.71e-09 | 15 |
lower respiratory tract | 2.71e-09 | 15 |
orifice | 5.99e-09 | 36 |
bronchus | 3.75e-08 | 5 |
subdivision of head | 1.26e-07 | 49 |
urothelium | 1.39e-07 | 5 |
primary subdivision of cranial skeletal system | 1.55e-07 | 5 |
epithelial fold | 6.97e-07 | 47 |