FFCP PHASE1:Hg19::chr15:77453587..77453599,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:77453587..77453599,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_at_chr15:77453587..77453599,- | |description=CAGE_peak_at_chr15:77453587..77453599,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000223!8.86e-08!59 | |ontology_enrichment_celltype=CL:0000223!8.86e-08!59 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.60e-09;3!CL:0002563;1.86e-07;4 | |ontology_enrichment_celltype_v019=CL:0000322;1.60e-09;3!CL:0002563;1.86e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.81e-09,3;CL:0002563,1.92e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006242;8.64e-26;1 | |ontology_enrichment_development_v019=UBERON:0006242;8.64e-26;1 | ||
|ontology_enrichment_disease=DOID:305!2.94e-11!106;DOID:0050687!3.37e-07!143;DOID:7!3.54e-07!39 | |ontology_enrichment_disease=DOID:305!2.94e-11!106;DOID:0050687!3.37e-07!143;DOID:7!3.54e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:3910;1.29e-13;2!DOID:3493;1.29e-13;2 | |ontology_enrichment_disease_v019=DOID:3910;1.29e-13;2!DOID:3493;1.29e-13;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3493,1.07e-13,2;DOID:3910,1.55e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0006947!3.21e-13!3;UBERON:0004054!3.21e-13!3;UBERON:0001007!3.22e-11!155;UBERON:0001555!3.22e-11!155;UBERON:0007026!3.22e-11!155;UBERON:0000160!3.61e-11!27;UBERON:0004921!1.09e-10!129;UBERON:0004185!1.09e-10!129;UBERON:0005409!2.40e-10!35;UBERON:0005904!4.93e-10!4;UBERON:0004119!7.99e-10!169;UBERON:0000925!7.99e-10!169;UBERON:0006595!7.99e-10!169;UBERON:0003135!2.82e-09!11;UBERON:0005172!1.79e-08!55;UBERON:0005173!1.79e-08!55;UBERON:0003101!2.68e-08!22;UBERON:0000079!2.68e-08!22;UBERON:0001155!4.51e-08!9;UBERON:0005177!1.91e-07!107;UBERON:0009497!2.01e-07!25;UBERON:0000015!2.01e-07!25;UBERON:0002423!2.01e-07!25;UBERON:0006235!2.01e-07!25;UBERON:0004161!2.01e-07!25;UBERON:0002417!2.08e-07!61;UBERON:0000916!2.08e-07!61;UBERON:0003929!2.78e-07!54;UBERON:0005911!4.31e-07!82;UBERON:0009856!4.43e-07!26;UBERON:0002110!5.48e-07!3;UBERON:0006242!5.48e-07!3;UBERON:0009569!6.38e-07!113 | |ontology_enrichment_uberon=UBERON:0006947!3.21e-13!3;UBERON:0004054!3.21e-13!3;UBERON:0001007!3.22e-11!155;UBERON:0001555!3.22e-11!155;UBERON:0007026!3.22e-11!155;UBERON:0000160!3.61e-11!27;UBERON:0004921!1.09e-10!129;UBERON:0004185!1.09e-10!129;UBERON:0005409!2.40e-10!35;UBERON:0005904!4.93e-10!4;UBERON:0004119!7.99e-10!169;UBERON:0000925!7.99e-10!169;UBERON:0006595!7.99e-10!169;UBERON:0003135!2.82e-09!11;UBERON:0005172!1.79e-08!55;UBERON:0005173!1.79e-08!55;UBERON:0003101!2.68e-08!22;UBERON:0000079!2.68e-08!22;UBERON:0001155!4.51e-08!9;UBERON:0005177!1.91e-07!107;UBERON:0009497!2.01e-07!25;UBERON:0000015!2.01e-07!25;UBERON:0002423!2.01e-07!25;UBERON:0006235!2.01e-07!25;UBERON:0004161!2.01e-07!25;UBERON:0002417!2.08e-07!61;UBERON:0000916!2.08e-07!61;UBERON:0003929!2.78e-07!54;UBERON:0005911!4.31e-07!82;UBERON:0009856!4.43e-07!26;UBERON:0002110!5.48e-07!3;UBERON:0006242!5.48e-07!3;UBERON:0009569!6.38e-07!113 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.58e-22;17!UBERON:0002108;5.44e-21;4!UBERON:0005409;9.41e-18;22!UBERON:0004903;1.29e-13;2!UBERON:0002173;1.29e-13;2!UBERON:0002186;1.29e-13;2!UBERON:0004921;2.21e-10;33!UBERON:0002114;1.19e-09;2!UBERON:0002110;1.60e-09;3!UBERON:0004821;1.60e-09;3!UBERON:0007499;1.60e-09;3!UBERON:0003215;1.60e-09;3!UBERON:0010368;1.60e-09;3!UBERON:0009911;1.60e-09;3!UBERON:0002299;1.60e-09;3!UBERON:0006524;1.60e-09;3!UBERON:0008874;1.60e-09;3!UBERON:0002169;1.60e-09;3!UBERON:0004894;1.60e-09;3!UBERON:0001242;1.86e-07;4!UBERON:0001262;1.86e-07;4!UBERON:0004786;1.86e-07;4!UBERON:0004808;1.86e-07;4!UBERON:0001277;1.86e-07;4!UBERON:0009856;1.86e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000160;1.58e-22;17!UBERON:0002108;5.44e-21;4!UBERON:0005409;9.41e-18;22!UBERON:0004903;1.29e-13;2!UBERON:0002173;1.29e-13;2!UBERON:0002186;1.29e-13;2!UBERON:0004921;2.21e-10;33!UBERON:0002114;1.19e-09;2!UBERON:0002110;1.60e-09;3!UBERON:0004821;1.60e-09;3!UBERON:0007499;1.60e-09;3!UBERON:0003215;1.60e-09;3!UBERON:0010368;1.60e-09;3!UBERON:0009911;1.60e-09;3!UBERON:0002299;1.60e-09;3!UBERON:0006524;1.60e-09;3!UBERON:0008874;1.60e-09;3!UBERON:0002169;1.60e-09;3!UBERON:0004894;1.60e-09;3!UBERON:0001242;1.86e-07;4!UBERON:0001262;1.86e-07;4!UBERON:0004786;1.86e-07;4!UBERON:0004808;1.86e-07;4!UBERON:0001277;1.86e-07;4!UBERON:0009856;1.86e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.54e-22,17;UBERON:0002108,4.92e-21,4;UBERON:0005409,8.97e-16,25;UBERON:0004903,1.55e-13,2;UBERON:0002173,1.55e-13,2;UBERON:0002186,1.55e-13,2;UBERON:0002114,1.10e-09,2;UBERON:0002110,1.54e-09,3;UBERON:0006242,1.54e-09,3;UBERON:0004821,1.81e-09,3;UBERON:0003215,1.81e-09,3;UBERON:0010368,1.81e-09,3;UBERON:0009911,1.81e-09,3;UBERON:0002299,1.81e-09,3;UBERON:0006524,1.81e-09,3;UBERON:0008874,1.81e-09,3;UBERON:0002169,1.81e-09,3;UBERON:0004894,1.81e-09,3;UBERON:0001242,1.92e-07,4;UBERON:0001262,1.92e-07,4;UBERON:0004786,1.92e-07,4;UBERON:0004808,1.92e-07,4;UBERON:0001277,1.92e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.410502947249729,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,2.07875276582847,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0.1137934482855,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0.995261931078505,2.21143911258348,0,0,0,0,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0.782205530939212,0,1.49417096317547,0,0.864542502924636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.494495150286999,0.202210631562555,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,1.70685094975177,0,0,0,0,0,0,0,0,0,0,5.63371354187996,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.410502947249729,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,2.07875276582847,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0.1137934482855,1.27126825146383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0.995261931078505,2.21143911258348,0,0,0,0,0,0,0,0,0.19566461893209,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0.782205530939212,0,1.49417096317547,0,0.864542502924636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393915911536118,0.494495150286999,0.202210631562555,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0.431855182437243,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,1.70685094975177,0,0,0,0,0,0,0,0,0,0,5.63371354187996,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0.240724100067505,0,0,0,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr15:77453587..77453599,- | |short_description=p@chr15:77453587..77453599,- | ||
}} | }} |
Latest revision as of 04:28, 25 July 2015
Short description: | p@chr15:77453587..77453599, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr15:77453587..77453599, - |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.81e-09 | 3 |
intestinal epithelial cell | 1.92e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.54e-22 | 17 |
small intestine | 4.92e-21 | 4 |
gastrointestinal system | 8.97e-16 | 25 |
bronchoalveolar duct junction | 1.55e-13 | 2 |
alveolar duct | 1.55e-13 | 2 |
bronchiole | 1.55e-13 | 2 |
duodenum | 1.10e-09 | 2 |
gallbladder | 1.54e-09 | 3 |
gall bladder primordium | 1.54e-09 | 3 |
pulmonary alveolus epithelium | 1.81e-09 | 3 |
alveolus | 1.81e-09 | 3 |
pulmonary lobule | 1.81e-09 | 3 |
lobule | 1.81e-09 | 3 |
alveolus of lung | 1.81e-09 | 3 |
alveolar system | 1.81e-09 | 3 |
pulmonary acinus | 1.81e-09 | 3 |
alveolar sac | 1.81e-09 | 3 |
alveolar wall | 1.81e-09 | 3 |
intestinal mucosa | 1.92e-07 | 4 |
wall of intestine | 1.92e-07 | 4 |
gastrointestinal system mucosa | 1.92e-07 | 4 |
gastrointestinal system epithelium | 1.92e-07 | 4 |
intestinal epithelium | 1.92e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.07e-13 | 2 |
lung adenocarcinoma | 1.55e-13 | 2 |