FFCP PHASE1:Hg19::chr16:12640952..12640965,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:12640952..12640965,- | |||
|description=CAGE_peak_at_chr16:12640952..12640965,- | |description=CAGE_peak_at_chr16:12640952..12640965,- | ||
|id=chr16:12640952..12640965,- | |id=chr16:12640952..12640965,- | ||
|ontology_enrichment_celltype=CL:0000945!2.49e-10!24;CL:0000826!2.49e-10!24;CL:0000785!3.69e-08!2;CL:0000955!3.69e-08!2;CL:0000818!3.69e-08!2;CL:0000954!3.69e-08!2;CL:0000816!3.69e-08!2;CL:0000838!2.72e-07!52;CL:0000542!4.18e-07!53;CL:0000051!4.18e-07!53 | |ontology_enrichment_celltype=CL:0000945!2.49e-10!24;CL:0000826!2.49e-10!24;CL:0000785!3.69e-08!2;CL:0000955!3.69e-08!2;CL:0000818!3.69e-08!2;CL:0000954!3.69e-08!2;CL:0000816!3.69e-08!2;CL:0000838!2.72e-07!52;CL:0000542!4.18e-07!53;CL:0000051!4.18e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000946;2.37e-29;1!CL:0000786;2.37e-29;1!CL:0000542;9.87e-14;53!CL:0000945;2.70e-11;24!CL:0000084;5.65e-11;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,1.33e-29,1;CL:0000786,1.33e-29,1;CL:0000980,1.33e-29,1;CL:0000838,8.37e-20,52;CL:0000542,1.95e-19,53;CL:0000051,1.95e-19,53;CL:0000785,1.54e-15,2;CL:0000955,1.54e-15,2;CL:0000818,1.54e-15,2;CL:0000954,1.54e-15,2;CL:0000816,1.54e-15,2;CL:0000945,2.61e-11,24;CL:0000826,2.61e-11,24;CL:0000084,6.05e-11,25;CL:0000827,6.05e-11,25;CL:0000817,8.17e-11,3;CL:0002087,5.15e-09,115;CL:0002031,1.20e-08,120;CL:0000738,1.18e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000954;2.05e-15;2!CL:0000051;9.87e-14;53 | |||
|ontology_enrichment_disease=DOID:0060058!1.57e-16!10 | |ontology_enrichment_disease=DOID:0060058!1.57e-16!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.40e-45;10!DOID:0060060;9.98e-30;1!DOID:0060061;9.98e-30;1!DOID:8691;9.98e-30;1!DOID:2531;3.06e-07;51!DOID:0060083;3.06e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.57e-45,10;DOID:0060060,9.99e-30,1;DOID:0060061,9.99e-30,1;DOID:8691,9.99e-30,1;DOID:2531,2.13e-09,51;DOID:0060083,2.13e-09,51 | |||
|ontology_enrichment_uberon=UBERON:0001893!1.29e-10!34;UBERON:0002106!1.61e-10!3;UBERON:0004854!1.61e-10!3;UBERON:0009034!1.61e-10!3;UBERON:0002095!1.61e-10!3;UBERON:0004782!1.61e-10!3;UBERON:0003281!1.61e-10!3;UBERON:0009664!1.61e-10!3;UBERON:0002296!1.61e-10!3;UBERON:0005602!1.61e-10!3;UBERON:0001179!1.61e-10!3;UBERON:0006293!1.61e-10!3;UBERON:0001869!1.73e-09!32;UBERON:0002791!3.68e-09!33;UBERON:0000955!6.34e-09!69;UBERON:0006238!6.34e-09!69;UBERON:0002020!7.74e-09!34;UBERON:0003528!7.74e-09!34;UBERON:0002780!1.95e-08!41;UBERON:0001890!1.95e-08!41;UBERON:0006240!1.95e-08!41;UBERON:0003080!3.49e-08!42;UBERON:0007023!4.38e-08!115;UBERON:0001017!4.95e-08!82;UBERON:0001049!1.30e-07!57;UBERON:0005068!1.30e-07!57;UBERON:0006241!1.30e-07!57;UBERON:0007135!1.30e-07!57;UBERON:0009663!1.56e-07!7;UBERON:0004177!1.59e-07!7;UBERON:0005743!1.72e-07!86;UBERON:0002616!2.90e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;9.90e-11;3!UBERON:0004177;6.04e-07;5!UBERON:0005057;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.99e-11,3;UBERON:0004854,8.99e-11,3;UBERON:0009034,8.99e-11,3;UBERON:0002095,8.99e-11,3;UBERON:0004782,8.99e-11,3;UBERON:0003281,8.99e-11,3;UBERON:0009664,8.99e-11,3;UBERON:0002296,8.99e-11,3;UBERON:0005602,8.99e-11,3;UBERON:0001179,8.99e-11,3;UBERON:0006293,8.99e-11,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,1.06978768047132,0.985207073399349,1.33808328233255,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,4.28490072989575,0,0,0.276283915531148,0,0.102268682502155,0.369254416383208,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.123563938946503,0.104421949505455,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0,0,0.271808412147228,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327130788511688,0,0,0,3.19979833367888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,1.72850981333669,0,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.603851374266694,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,1.69899965072379,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0.961705476909699 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,1.06978768047132,0.985207073399349,1.33808328233255,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348259474598534,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0,0,0,0,0,0,4.28490072989575,0,0,0.276283915531148,0,0.102268682502155,0.369254416383208,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.123563938946503,0.104421949505455,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0.171594997861965,0,0,0,0.271808412147228,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327130788511688,0,0,0,3.19979833367888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0,0.205116364240755,0,0.138314504928436,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,1.72850981333669,0,0,0.131545547125698,0,0,0,0.157115589916002,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0.603851374266694,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,1.69899965072379,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0,0.961705476909699 | ||
|short_description=p@chr16:12640952..12640965,- | |short_description=p@chr16:12640952..12640965,- | ||
}} | }} |
Latest revision as of 06:19, 25 July 2015
Short description: | p@chr16:12640952..12640965, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:12640952..12640965, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 1.33e-29 | 1 |
plasma cell | 1.33e-29 | 1 |
plasmablast | 1.33e-29 | 1 |
lymphoid lineage restricted progenitor cell | 8.37e-20 | 52 |
lymphocyte | 1.95e-19 | 53 |
common lymphoid progenitor | 1.95e-19 | 53 |
mature B cell | 1.54e-15 | 2 |
pre-B-II cell | 1.54e-15 | 2 |
transitional stage B cell | 1.54e-15 | 2 |
small pre-B-II cell | 1.54e-15 | 2 |
immature B cell | 1.54e-15 | 2 |
lymphocyte of B lineage | 2.61e-11 | 24 |
pro-B cell | 2.61e-11 | 24 |
T cell | 6.05e-11 | 25 |
pro-T cell | 6.05e-11 | 25 |
precursor B cell | 8.17e-11 | 3 |
nongranular leukocyte | 5.15e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 1.20e-08 | 120 |
leukocyte | 1.18e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.99e-11 | 3 |
gastrointestinal system mesentery | 8.99e-11 | 3 |
stomach region | 8.99e-11 | 3 |
mesentery | 8.99e-11 | 3 |
gastrointestinal system serosa | 8.99e-11 | 3 |
mesentery of stomach | 8.99e-11 | 3 |
gut mesentery | 8.99e-11 | 3 |
dorsal mesentery | 8.99e-11 | 3 |
dorsal mesogastrium | 8.99e-11 | 3 |
peritoneal cavity | 8.99e-11 | 3 |
spleen primordium | 8.99e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.57e-45 | 10 |
non-Hodgkin lymphoma | 9.99e-30 | 1 |
cutaneous T cell lymphoma | 9.99e-30 | 1 |
mycosis fungoides | 9.99e-30 | 1 |
hematologic cancer | 2.13e-09 | 51 |
immune system cancer | 2.13e-09 | 51 |