FFCP PHASE1:Hg19::chr17:50906130..50906141,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:50906130..50906141,- | |||
|coexpression_cluster_id=C86 | |coexpression_cluster_id=C86 | ||
|description=CAGE_peak_at_chr17:50906130..50906141,- | |description=CAGE_peak_at_chr17:50906130..50906141,- | ||
|id=chr17:50906130..50906141,- | |id=chr17:50906130..50906141,- | ||
|ontology_enrichment_celltype=CL:0000039!7.63e-17!7;CL:0000586!7.63e-17!7;CL:0002178!1.11e-07!3 | |ontology_enrichment_celltype=CL:0000039!7.63e-17!7;CL:0000586!7.63e-17!7;CL:0002178!1.11e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002178;1.09e-18;3!CL:0000039;1.10e-17;7!CL:0000586;1.10e-17;7!CL:0002253;3.56e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,8.69e-19,3;CL:0000039,9.86e-18,7;CL:0000586,9.86e-18,7;CL:0002253,3.56e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.43e-12;10!UBERON:0005564;1.43e-12;10 | |||
|ontology_enrichment_disease=DOID:162!2.54e-21!235;DOID:14566!1.02e-20!239;DOID:0050687!3.65e-18!143;DOID:305!5.74e-15!106;DOID:299!2.36e-14!25;DOID:0050686!4.81e-14!137;DOID:4468!9.67e-11!2;DOID:3095!2.71e-07!22;DOID:2994!2.71e-07!22 | |ontology_enrichment_disease=DOID:162!2.54e-21!235;DOID:14566!1.02e-20!239;DOID:0050687!3.65e-18!143;DOID:305!5.74e-15!106;DOID:299!2.36e-14!25;DOID:0050686!4.81e-14!137;DOID:4468!9.67e-11!2;DOID:3095!2.71e-07!22;DOID:2994!2.71e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:299;2.79e-13;25!DOID:3095;5.63e-10;22!DOID:2994;5.63e-10;22!DOID:3119;3.12e-09;14!DOID:1325;1.50e-08;7!DOID:3904;1.50e-08;7!DOID:3910;4.53e-08;2!DOID:4468;7.03e-08;2!DOID:3493;7.03e-08;2!DOID:3905;7.75e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.89e-14,143;DOID:299,2.18e-13,25;DOID:305,1.83e-11,106;DOID:3095,5.44e-10,22;DOID:2994,5.44e-10,22;DOID:3119,2.91e-09,14;DOID:1325,1.78e-08,7;DOID:3904,1.78e-08,7;DOID:3910,5.02e-08,2;DOID:162,5.02e-08,235;DOID:4468,5.37e-08,2;DOID:3493,6.58e-08,2;DOID:14566,7.97e-08,239;DOID:3905,8.84e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.68e-20!8;UBERON:0003135!9.32e-15!11;UBERON:0003101!1.86e-09!22;UBERON:0000079!1.86e-09!22;UBERON:0002323!3.13e-08!46;UBERON:0004458!1.28e-07!49;UBERON:0000991!1.91e-07!21;UBERON:0009196!1.91e-07!21;UBERON:0009117!1.91e-07!21;UBERON:0005564!1.91e-07!21;UBERON:0004176!4.43e-07!22 | |ontology_enrichment_uberon=UBERON:0000473!1.68e-20!8;UBERON:0003135!9.32e-15!11;UBERON:0003101!1.86e-09!22;UBERON:0000079!1.86e-09!22;UBERON:0002323!3.13e-08!46;UBERON:0004458!1.28e-07!49;UBERON:0000991!1.91e-07!21;UBERON:0009196!1.91e-07!21;UBERON:0009117!1.91e-07!21;UBERON:0005564!1.91e-07!21;UBERON:0004176!4.43e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.48e-15;8!UBERON:0000945;1.31e-11;5!UBERON:0010039;1.31e-11;5!UBERON:0003135;1.76e-11;11!UBERON:0004903;4.53e-08;2!UBERON:0002173;4.53e-08;2!UBERON:0002186;4.53e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.64e-15,8;UBERON:0003135,1.89e-11,11;UBERON:0004903,5.02e-08,2;UBERON:0002173,5.02e-08,2;UBERON:0002186,5.02e-08,2;UBERON:0000945,1.27e-07,8;UBERON:0010039,1.27e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0.540911356951966,0,0,0,0,1.69904730449319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0,0,0,0,0,0,0,0,0,0,0,0,2.2882828526349,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,1.62971057883012,0,0,0,0,0,0,0,0,0,0.37950746544837,0,1.89898258075224,0.489698424477443,0,9.30471150890992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,2.79733453414982,0,0,0,0,0,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0.903017728242729,0,2.71949019648302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0085253435176,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57040373784389,0,0,0,0,0,0,0,0,0,0,1.05673990496671,0,0,0,0,0,0,0,0,0,0,0,0.999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.513108155165,0,0.101988829741982,3.47382626845229,0.0918948995348449,1.50424523575425,0.0757786982182394,1.07185652062471,0,0,0,0,0,0,1.23345048838675,0,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0.540911356951966,0,0,0,0,1.69904730449319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0,0,0,0,0,0,0,0,0,0,0,0,2.2882828526349,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,1.62971057883012,0,0,0,0,0,0,0,0,0,0.37950746544837,0,1.89898258075224,0.489698424477443,0,9.30471150890992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,2.79733453414982,0,0,0,0,0,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0.211200673038813,0,0,0,0,0,0,0,0,0,0.903017728242729,0,2.71949019648302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.172214979660816,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0085253435176,0,0,0.49131575253029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57040373784389,0,0,0,0,0,0,0,0,0,0,1.05673990496671,0,0,0,0,0,0,0,0,0,0,0,0.999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.513108155165,0,0.101988829741982,3.47382626845229,0.0918948995348449,1.50424523575425,0.0757786982182394,1.07185652062471,0,0,0,0,0,0,1.23345048838675,0,0,0,0,0,0,0,0.244209805832924,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:50906130..50906141,- | |short_description=p@chr17:50906130..50906141,- | ||
}} | }} |
Latest revision as of 18:57, 25 July 2015
Short description: | p@chr17:50906130..50906141, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:50906130..50906141, - |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 8.69e-19 | 3 |
germ line cell | 9.86e-18 | 7 |
germ cell | 9.86e-18 | 7 |
epithelial cell of large intestine | 3.56e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 1.64e-15 | 8 |
male reproductive organ | 1.89e-11 | 11 |
bronchoalveolar duct junction | 5.02e-08 | 2 |
alveolar duct | 5.02e-08 | 2 |
bronchiole | 5.02e-08 | 2 |
stomach | 1.27e-07 | 8 |
food storage organ | 1.27e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.89e-14 | 143 |
adenocarcinoma | 2.18e-13 | 25 |
carcinoma | 1.83e-11 | 106 |
germ cell and embryonal cancer | 5.44e-10 | 22 |
germ cell cancer | 5.44e-10 | 22 |
gastrointestinal system cancer | 2.91e-09 | 14 |
bronchus cancer | 1.78e-08 | 7 |
bronchogenic carcinoma | 1.78e-08 | 7 |
lung adenocarcinoma | 5.02e-08 | 2 |
cancer | 5.02e-08 | 235 |
clear cell adenocarcinoma | 5.37e-08 | 2 |
signet ring cell adenocarcinoma | 6.58e-08 | 2 |
disease of cellular proliferation | 7.97e-08 | 239 |
lung carcinoma | 8.84e-07 | 9 |