FFCP PHASE1:Hg19::chr18:21483996..21484010,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:21483996..21484010,+ | |||
|coexpression_cluster_id=C363 | |coexpression_cluster_id=C363 | ||
|description=CAGE_peak_at_chr18:21483996..21484010,+ | |description=CAGE_peak_at_chr18:21483996..21484010,+ | ||
|id=chr18:21483996..21484010,+ | |id=chr18:21483996..21484010,+ | ||
|ontology_enrichment_celltype=CL:0002159;3.66e-23;14!CL:0002166;2.39e-21;3!CL:0002621;3.32e-20;3!CL:0002076;1.01e-18;42!CL:0000240;3.39e-18;6!CL:0000311;3.39e-18;6!CL:0000079;3.39e-18;6!CL:0000237;3.39e-18;6!CL:0002327;1.45e-15;4!CL:0000312;7.52e-13;5!CL:0000362;2.40e-12;9!CL:0002077;2.01e-10;34!CL:0002541;2.71e-10;3!CL:0002231;4.68e-10;3!CL:0002368;1.76e-08;13!CL:0002251;5.18e-08;20!CL:0002336;7.09e-08;1!CL:0002261;7.09e-08;1!CL:0002170;7.09e-08;1 | |ontology_enrichment_celltype=CL:0000066!1.25e-29!254;CL:0002076!4.72e-29!43;CL:0000223!1.99e-20!59;CL:0002251!8.38e-14!21;CL:0002159!5.21e-13!13;CL:0002368!2.16e-12!13;CL:0000076!4.79e-11!62;CL:0002166!4.40e-08!3;CL:0000220!8.10e-08!246;CL:0002621!9.15e-08!3;CL:0002541!1.09e-07!3;CL:0002321!1.16e-07!248;CL:0000068!2.32e-07!3;CL:0000069!2.32e-07!3;CL:0000307!2.32e-07!3;CL:0000377!2.32e-07!3;CL:0002231!4.01e-07!3;CL:0002077!5.31e-07!33 | ||
| | |ontology_enrichment_celltype_v019=CL:0002159;3.66e-23;14!CL:0002166;2.39e-21;3!CL:0002621;3.32e-20;3!CL:0002076;1.01e-18;42!CL:0000240;3.39e-18;6!CL:0000311;3.39e-18;6!CL:0000079;3.39e-18;6!CL:0000237;3.39e-18;6!CL:0002327;1.45e-15;4!CL:0000312;7.52e-13;5!CL:0000362;2.40e-12;9!CL:0002077;2.01e-10;34!CL:0002541;2.71e-10;3!CL:0002231;4.68e-10;3!CL:0002368;1.76e-08;13!CL:0002251;5.18e-08;20!CL:0002336;7.09e-08;1!CL:0002261;7.09e-08;1!CL:0002170;7.09e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0002159,3.86e-23,14;CL:0002166,1.48e-21,3;CL:0002621,1.40e-20,3;CL:0002076,1.83e-20,42;CL:0000240,4.34e-18,6;CL:0000311,4.34e-18,6;CL:0000079,4.34e-18,6;CL:0000237,4.34e-18,6;CL:0000036,4.34e-18,6;CL:0000357,4.34e-18,6;CL:0000114,4.34e-18,6;CL:0002327,8.78e-16,4;CL:0000223,3.29e-14,58;CL:0000066,3.88e-13,253;CL:0000312,1.02e-12,5;CL:0000362,3.08e-12,9;CL:0002077,1.17e-11,34;CL:0002541,2.42e-10,3;CL:0002231,6.57e-10,3;CL:0002368,2.21e-08,13;CL:0002251,4.51e-08,20;CL:0002336,6.19e-08,1;CL:0002261,6.19e-08,1;CL:0002170,6.19e-08,1 | ||
|ontology_enrichment_uberon=UBERON:0001949;3.32e-20;3!UBERON:0001708;3.70e-16;4!UBERON:0008895;3.70e-16;4!UBERON:0001911;1.45e-15;4!UBERON:0011159;4.92e-13;5!UBERON:0005631;3.68e-11;10!UBERON:0000158;3.68e-11;10!UBERON:0003124;2.71e-10;3!UBERON:0000920;2.71e-10;3!UBERON:0010371;1.37e-09;31!UBERON:0003929;5.68e-09;7!UBERON:0000486;6.49e-09;12!UBERON:0003729;3.08e-08;13!UBERON:0003350;6.56e-08;8!UBERON:0001828;6.56e-08;8!UBERON:0001003;1.89e-07;15!UBERON:0007376;1.89e-07;15 | |ontology_enrichment_development_v019=CL:0000357;3.39e-18;6!CL:0000114;3.39e-18;6!CL:0000223;7.86e-08;58 | ||
|ontology_enrichment_disease=DOID:1749!6.73e-12!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!3.61e-14!14;UBERON:0000158!3.61e-14!14;UBERON:0003124!5.19e-11!7;UBERON:0004119!1.79e-10!169;UBERON:0000925!1.79e-10!169;UBERON:0006595!1.79e-10!169;UBERON:0003729!4.64e-10!5;UBERON:0000344!4.34e-09!12;UBERON:0001004!2.68e-08!72;UBERON:0004923!2.76e-08!57;UBERON:0005910!3.06e-08!6;UBERON:0003343!4.62e-08!4;UBERON:0004785!4.62e-08!4;UBERON:0001949!9.15e-08!3;UBERON:0000476!1.09e-07!3;UBERON:0000920!1.09e-07!3;UBERON:0000478!2.78e-07!24;UBERON:0000161!4.31e-07!35;UBERON:0000365!7.25e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;3.32e-20;3!UBERON:0001708;3.70e-16;4!UBERON:0008895;3.70e-16;4!UBERON:0001911;1.45e-15;4!UBERON:0011159;4.92e-13;5!UBERON:0005631;3.68e-11;10!UBERON:0000158;3.68e-11;10!UBERON:0003124;2.71e-10;3!UBERON:0000920;2.71e-10;3!UBERON:0010371;1.37e-09;31!UBERON:0003929;5.68e-09;7!UBERON:0000486;6.49e-09;12!UBERON:0003729;3.08e-08;13!UBERON:0003350;6.56e-08;8!UBERON:0001828;6.56e-08;8!UBERON:0001003;1.89e-07;15!UBERON:0007376;1.89e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.40e-20,3;UBERON:0001708,2.59e-16,4;UBERON:0008895,2.59e-16,4;UBERON:0001911,8.78e-16,4;UBERON:0005333,8.78e-16,4;UBERON:0008425,8.78e-16,4;UBERON:0005311,8.78e-16,4;UBERON:0011159,3.71e-13,5;UBERON:0010188,4.77e-11,6;UBERON:0002539,4.77e-11,6;UBERON:0008816,4.77e-11,6;UBERON:0003102,1.50e-10,99;UBERON:0000920,2.42e-10,3;UBERON:0003729,2.30e-08,13;UBERON:0000076,3.85e-08,8;UBERON:0003350,4.79e-08,8;UBERON:0001828,4.79e-08,8;UBERON:0005631,5.07e-08,14;UBERON:0000158,5.07e-08,14;UBERON:0001003,2.18e-07,15;UBERON:0007376,2.18e-07,15;UBERON:0007383,2.18e-07,15 | |||
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| ||
|short_description=p@chr18:21483996..21484010,+ | |short_description=p@chr18:21483996..21484010,+ | ||
}} | }} |
Latest revision as of 00:00, 26 July 2015
Short description: | p@chr18:21483996..21484010, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:21483996..21484010, + |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 3.86e-23 | 14 |
epithelial cell of Malassez | 1.48e-21 | 3 |
gingival epithelial cell | 1.40e-20 | 3 |
endo-epithelial cell | 1.83e-20 | 42 |
stratified squamous epithelial cell | 4.34e-18 | 6 |
keratin accumulating cell | 4.34e-18 | 6 |
stratified epithelial cell | 4.34e-18 | 6 |
keratinizing barrier epithelial cell | 4.34e-18 | 6 |
epithelial fate stem cell | 4.34e-18 | 6 |
stratified epithelial stem cell | 4.34e-18 | 6 |
surface ectodermal cell | 4.34e-18 | 6 |
mammary gland epithelial cell | 8.78e-16 | 4 |
endodermal cell | 3.29e-14 | 58 |
epithelial cell | 3.88e-13 | 253 |
keratinocyte | 1.02e-12 | 5 |
epidermal cell | 3.08e-12 | 9 |
ecto-epithelial cell | 1.17e-11 | 34 |
chorionic membrane mesenchymal stem cell | 2.42e-10 | 3 |
epithelial cell of prostate | 6.57e-10 | 3 |
respiratory epithelial cell | 2.21e-08 | 13 |
epithelial cell of alimentary canal | 4.51e-08 | 20 |
buccal mucosa cell | 6.19e-08 | 1 |
endothelial cell of viscerocranial mucosa | 6.19e-08 | 1 |
keratinized cell of the oral mucosa | 6.19e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.40e-20 | 3 |
jaw skeleton | 2.59e-16 | 4 |
splanchnocranium | 2.59e-16 | 4 |
mammary gland | 8.78e-16 | 4 |
mammary bud | 8.78e-16 | 4 |
mammary ridge | 8.78e-16 | 4 |
mammary placode | 8.78e-16 | 4 |
primary subdivision of cranial skeletal system | 3.71e-13 | 5 |
protuberance | 4.77e-11 | 6 |
pharyngeal arch | 4.77e-11 | 6 |
embryonic head | 4.77e-11 | 6 |
surface structure | 1.50e-10 | 99 |
egg chorion | 2.42e-10 | 3 |
mouth mucosa | 2.30e-08 | 13 |
external ectoderm | 3.85e-08 | 8 |
epithelium of mucosa | 4.79e-08 | 8 |
gingiva | 4.79e-08 | 8 |
extraembryonic membrane | 5.07e-08 | 14 |
membranous layer | 5.07e-08 | 14 |
skin epidermis | 2.18e-07 | 15 |
outer epithelium | 2.18e-07 | 15 |
enveloping layer of ectoderm | 2.18e-07 | 15 |