FFCP PHASE1:Hg19::chr19:3180462..3180482,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:3180462..3180482,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_at_chr19:3180462..3180482,- | |description=CAGE_peak_at_chr19:3180462..3180482,- | ||
|id=chr19:3180462..3180482,- | |id=chr19:3180462..3180482,- | ||
|ontology_enrichment_celltype=CL:0000037!8.95e-51!172;CL:0000566!8.95e-51!172;CL:0002032!1.48e-49!165;CL:0000837!1.48e-49!165;CL:0000988!2.72e-49!182;CL:0002087!1.89e-46!119;CL:0000738!8.27e-46!140;CL:0002031!2.75e-39!124;CL:0002057!5.06e-36!42;CL:0000860!7.43e-33!45;CL:0000763!8.06e-32!112;CL:0000049!8.06e-32!112;CL:0000766!2.28e-30!76;CL:0002194!1.65e-27!63;CL:0000576!1.65e-27!63;CL:0000040!1.65e-27!63;CL:0000559!1.65e-27!63;CL:0002009!2.70e-26!65;CL:0000839!5.65e-25!70;CL:0000557!4.53e-23!71;CL:0000542!2.10e-15!53;CL:0000051!2.10e-15!53;CL:0000838!1.26e-14!52;CL:0000134!2.91e-12!358;CL:0002320!1.35e-11!365;CL:0000084!7.61e-11!25;CL:0000827!7.61e-11!25;CL:0000219!2.70e-09!390;CL:0000791!8.47e-09!18;CL:0000789!8.47e-09!18;CL:0002420!8.47e-09!18;CL:0002419!8.47e-09!18;CL:0000790!8.47e-09!18;CL:0000625!9.44e-09!11;CL:0000094!1.64e-07!8;CL:0002393!1.72e-07!9;CL:0002397!1.72e-07!9;CL:0000081!8.65e-07!11;CL:0000775!9.20e-07!3 | |ontology_enrichment_celltype=CL:0000037!8.95e-51!172;CL:0000566!8.95e-51!172;CL:0002032!1.48e-49!165;CL:0000837!1.48e-49!165;CL:0000988!2.72e-49!182;CL:0002087!1.89e-46!119;CL:0000738!8.27e-46!140;CL:0002031!2.75e-39!124;CL:0002057!5.06e-36!42;CL:0000860!7.43e-33!45;CL:0000763!8.06e-32!112;CL:0000049!8.06e-32!112;CL:0000766!2.28e-30!76;CL:0002194!1.65e-27!63;CL:0000576!1.65e-27!63;CL:0000040!1.65e-27!63;CL:0000559!1.65e-27!63;CL:0002009!2.70e-26!65;CL:0000839!5.65e-25!70;CL:0000557!4.53e-23!71;CL:0000542!2.10e-15!53;CL:0000051!2.10e-15!53;CL:0000838!1.26e-14!52;CL:0000134!2.91e-12!358;CL:0002320!1.35e-11!365;CL:0000084!7.61e-11!25;CL:0000827!7.61e-11!25;CL:0000219!2.70e-09!390;CL:0000791!8.47e-09!18;CL:0000789!8.47e-09!18;CL:0002420!8.47e-09!18;CL:0002419!8.47e-09!18;CL:0000790!8.47e-09!18;CL:0000625!9.44e-09!11;CL:0000094!1.64e-07!8;CL:0002393!1.72e-07!9;CL:0002397!1.72e-07!9;CL:0000081!8.65e-07!11;CL:0000775!9.20e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000775;3.92e-21;3!CL:0000860;5.76e-16;33!CL:0002057;5.76e-16;33!CL:0000094;1.34e-13;8!CL:0000473;2.19e-12;39!CL:0000234;2.19e-12;39!CL:0000081;6.35e-10;11!CL:0000576;2.77e-09;48!CL:0000766;3.52e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,3.55e-21,3;CL:0000766,1.35e-14,72;CL:0000094,1.26e-13,8;CL:0000860,1.64e-13,42;CL:0002057,1.64e-13,42;CL:0000738,4.91e-13,136;CL:0002032,8.99e-12,161;CL:0000837,8.99e-12,161;CL:0000473,1.30e-11,48;CL:0000234,1.30e-11,48;CL:0000037,4.04e-11,168;CL:0000988,2.34e-10,177;CL:0000763,2.54e-10,108;CL:0000049,2.54e-10,108;CL:0000081,6.07e-10,11;CL:0002087,2.62e-09,115;CL:0002194,5.93e-09,59;CL:0000576,5.93e-09,59;CL:0000040,5.93e-09,59;CL:0000559,5.93e-09,59;CL:0002031,8.34e-09,120;CL:0002009,1.30e-08,61;CL:0000839,7.62e-08,66;CL:0000557,1.05e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.53e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.98e-37!102;UBERON:0003061!3.98e-37!102;UBERON:0002193!4.23e-35!112;UBERON:0000178!3.10e-20!15;UBERON:0000179!3.10e-20!15;UBERON:0000463!3.10e-20!15;UBERON:0002371!3.66e-19!80;UBERON:0001474!4.97e-17!86;UBERON:0002405!1.20e-15!115;UBERON:0004765!7.27e-13!101;UBERON:0001434!7.27e-13!101;UBERON:0002384!1.07e-10!375;UBERON:0003081!1.36e-10!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.59e-35;15!UBERON:0000179;7.59e-35;15!UBERON:0000463;7.59e-35;15!UBERON:0002390;2.66e-14;32!UBERON:0002193;4.71e-10;42!UBERON:0000029;1.31e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.91e-35,15;UBERON:0000179,7.91e-35,15;UBERON:0000463,7.91e-35,15;UBERON:0002390,5.47e-20,98;UBERON:0003061,5.47e-20,98;UBERON:0002193,6.05e-20,108;UBERON:0000029,8.51e-08,1;UBERON:0003081,9.88e-08,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0,0.550975469195755,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0.223915474239924,0,0,0.872389432677388,0.377875943688809,1.4555043671269,1.16214518452842,1.23350366406548,0.929119112685311,1.43846196161075,2.30544635876191,0.709446689665756,0.344745680736619,0,0,0.376484679085209,0.545812300115692,0.674170453335254,0.612167784741805,0.320929027076094,0,2.96866170168044,2.19410023383795,0.852449501065388,0.290209238628584,0,0,3.01498398308092,4.69334626578181,1.3031330682307,0,0.368277635987565,0.316462387440884,0.633765858935825,0.212604299965044,0.628975936525128,0.22465726229299,0.300353785683013,0.16072558669708,0.285012743741249,0,0.365328307529268,1.75996244461323,0,0.889509253863555,0.426730222566507,0,0,1.32208974556972,0.954053754535364,0,0,0,0,0,0,0,0.786021525498329,0.411202997999018,0.334372990781356,0,0,0,0.557052284425868,0,0.443067789167242,0.541607727530031,0.128091319725675,0.260118695119756,0.822189523018381,1.38175008892924,0.579606171470105,0,0,0,0.226618685395132,0,0,0,0.637130828648193,0.651083453856419,0.950452044448374,0,1.02389288923535,1.24930726552346,1.18388626022008,0,0.403213486449465,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.696518949197069,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0,0,0,0,0,0,0,12.7331194071021,8.97484377612075,13.2612964299531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.862856803274467,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,6.08937131078603,12.234195314278,15.9501212408766,3.81170840732462,4.52498500394814,8.43015304550532,10.2605973075242,12.6900028207083,0,0,0,0.185803175125719,0,0,0,0.199579371432817,0.191505370132367,1.2700414963433,0,0,0,0.94007937463814,0,0.338583555603207,0.481764225311099,0.605399121573143,0,0.687010689511529,0,0,0,0.976940477010201,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0.140669416410513,0,0.659215496907038,0,0.398495976502139,0,0,0,0.246169610922139,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784901281975124,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0.296521128680622,0,0.208843899010911,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0.471612915298998,0.414239055347196,1.9846640872478,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.186224142887574,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0,0.550975469195755,0,0.383829398097213,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0.223915474239924,0,0,0.872389432677388,0.377875943688809,1.4555043671269,1.16214518452842,1.23350366406548,0.929119112685311,1.43846196161075,2.30544635876191,0.709446689665756,0.344745680736619,0,0,0.376484679085209,0.545812300115692,0.674170453335254,0.612167784741805,0.320929027076094,0,2.96866170168044,2.19410023383795,0.852449501065388,0.290209238628584,0,0,3.01498398308092,4.69334626578181,1.3031330682307,0,0.368277635987565,0.316462387440884,0.633765858935825,0.212604299965044,0.628975936525128,0.22465726229299,0.300353785683013,0.16072558669708,0.285012743741249,0,0.365328307529268,1.75996244461323,0,0.889509253863555,0.426730222566507,0,0,1.32208974556972,0.954053754535364,0,0,0,0,0,0,0,0.786021525498329,0.411202997999018,0.334372990781356,0,0,0,0.557052284425868,0,0.443067789167242,0.541607727530031,0.128091319725675,0.260118695119756,0.822189523018381,1.38175008892924,0.579606171470105,0,0,0,0.226618685395132,0,0,0,0.637130828648193,0.651083453856419,0.950452044448374,0,1.02389288923535,1.24930726552346,1.18388626022008,0,0.403213486449465,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.696518949197069,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0,0,0,0,0,0,0,12.7331194071021,8.97484377612075,13.2612964299531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.862856803274467,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,6.08937131078603,12.234195314278,15.9501212408766,3.81170840732462,4.52498500394814,8.43015304550532,10.2605973075242,12.6900028207083,0,0,0,0.185803175125719,0,0,0,0.199579371432817,0.191505370132367,1.2700414963433,0,0,0,0.94007937463814,0,0.338583555603207,0.481764225311099,0.605399121573143,0,0.687010689511529,0,0,0,0.976940477010201,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0.296964680832639,0,0,0.140669416410513,0,0.659215496907038,0,0.398495976502139,0,0,0,0.246169610922139,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784901281975124,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0.296521128680622,0,0.208843899010911,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.106787412567695,0.471612915298998,0.414239055347196,1.9846640872478,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.939839179798536,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.186224142887574,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:3180462..3180482,- | |short_description=p@chr19:3180462..3180482,- | ||
}} | }} |
Latest revision as of 06:11, 26 July 2015
Short description: | p@chr19:3180462..3180482, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:3180462..3180482, - |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 3.55e-21 | 3 |
myeloid leukocyte | 1.35e-14 | 72 |
granulocyte | 1.26e-13 | 8 |
classical monocyte | 1.64e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.64e-13 | 42 |
leukocyte | 4.91e-13 | 136 |
hematopoietic oligopotent progenitor cell | 8.99e-12 | 161 |
hematopoietic multipotent progenitor cell | 8.99e-12 | 161 |
defensive cell | 1.30e-11 | 48 |
phagocyte | 1.30e-11 | 48 |
hematopoietic stem cell | 4.04e-11 | 168 |
hematopoietic cell | 2.34e-10 | 177 |
myeloid cell | 2.54e-10 | 108 |
common myeloid progenitor | 2.54e-10 | 108 |
blood cell | 6.07e-10 | 11 |
nongranular leukocyte | 2.62e-09 | 115 |
monopoietic cell | 5.93e-09 | 59 |
monocyte | 5.93e-09 | 59 |
monoblast | 5.93e-09 | 59 |
promonocyte | 5.93e-09 | 59 |
hematopoietic lineage restricted progenitor cell | 8.34e-09 | 120 |
macrophage dendritic cell progenitor | 1.30e-08 | 61 |
myeloid lineage restricted progenitor cell | 7.62e-08 | 66 |
granulocyte monocyte progenitor cell | 1.05e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
blood | 7.91e-35 | 15 |
haemolymphatic fluid | 7.91e-35 | 15 |
organism substance | 7.91e-35 | 15 |
hematopoietic system | 5.47e-20 | 98 |
blood island | 5.47e-20 | 98 |
hemolymphoid system | 6.05e-20 | 108 |
lymph node | 8.51e-08 | 1 |
lateral plate mesoderm | 9.88e-08 | 203 |