FFCP PHASE1:Hg19::chr19:36275677..36275698,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:36275677..36275698,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_at_chr19:36275677..36275698,+ | |description=CAGE_peak_at_chr19:36275677..36275698,+ | ||
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|ontology_enrichment_celltype=CL:0002322!2.27e-24!5;CL:0000039!1.24e-11!7;CL:0000586!1.24e-11!7;CL:0000540!5.42e-08!6;CL:0000031!5.42e-08!6;CL:0000404!5.42e-08!6 | |ontology_enrichment_celltype=CL:0002322!2.27e-24!5;CL:0000039!1.24e-11!7;CL:0000586!1.24e-11!7;CL:0000540!5.42e-08!6;CL:0000031!5.42e-08!6;CL:0000404!5.42e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002322;8.14e-66;5!CL:0000039;6.63e-31;7!CL:0000586;6.63e-31;7!CL:0002321;4.63e-22;15!CL:0000540;1.02e-20;6!CL:0000404;1.02e-20;6!CL:0000148;1.49e-12;10!CL:0000147;3.96e-09;14 | |ontology_enrichment_celltype_v019=CL:0002322;8.14e-66;5!CL:0000039;6.63e-31;7!CL:0000586;6.63e-31;7!CL:0002321;4.63e-22;15!CL:0000540;1.02e-20;6!CL:0000404;1.02e-20;6!CL:0000148;1.49e-12;10!CL:0000147;3.96e-09;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.82e-65,5;CL:0000039,4.52e-31,7;CL:0000586,4.52e-31,7;CL:0000540,1.02e-20,6;CL:0000031,1.02e-20,6;CL:0000404,1.02e-20,6;CL:0000047,1.05e-15,8;CL:0000148,1.62e-12,10;CL:0000541,1.62e-12,10;CL:0000147,4.19e-09,14;CL:0000133,1.49e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.28e-22;10!UBERON:0005564;9.28e-22;10!CL:0000031;1.02e-20;6 | |ontology_enrichment_development_v019=UBERON:0009117;9.28e-22;10!UBERON:0005564;9.28e-22;10!CL:0000031;1.02e-20;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;3.95e-15;22!DOID:2994;3.95e-15;22 | |ontology_enrichment_disease_v019=DOID:3095;3.95e-15;22!DOID:2994;3.95e-15;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,3.35e-15,22;DOID:2994,3.35e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0001950!1.05e-15!20;UBERON:0000473!4.65e-15!8;UBERON:0002771!2.43e-14!3;UBERON:0002619!3.33e-14!22;UBERON:0000956!2.18e-12!25;UBERON:0000203!2.18e-12!25;UBERON:0003135!7.19e-11!11;UBERON:0001017!3.09e-10!82;UBERON:0007023!1.17e-09!115;UBERON:0005743!1.29e-09!86;UBERON:0001869!1.95e-09!32;UBERON:0002791!4.08e-09!33;UBERON:0002780!8.08e-09!41;UBERON:0001890!8.08e-09!41;UBERON:0006240!8.08e-09!41;UBERON:0002020!8.21e-09!34;UBERON:0003528!8.21e-09!34;UBERON:0001893!8.21e-09!34;UBERON:0002021!1.09e-08!5;UBERON:0001049!1.16e-08!57;UBERON:0005068!1.16e-08!57;UBERON:0006241!1.16e-08!57;UBERON:0007135!1.16e-08!57;UBERON:0003080!1.42e-08!42;UBERON:0000073!2.07e-08!94;UBERON:0001016!2.07e-08!94;UBERON:0000200!2.12e-07!6;UBERON:0002616!6.88e-07!59 | |ontology_enrichment_uberon=UBERON:0001950!1.05e-15!20;UBERON:0000473!4.65e-15!8;UBERON:0002771!2.43e-14!3;UBERON:0002619!3.33e-14!22;UBERON:0000956!2.18e-12!25;UBERON:0000203!2.18e-12!25;UBERON:0003135!7.19e-11!11;UBERON:0001017!3.09e-10!82;UBERON:0007023!1.17e-09!115;UBERON:0005743!1.29e-09!86;UBERON:0001869!1.95e-09!32;UBERON:0002791!4.08e-09!33;UBERON:0002780!8.08e-09!41;UBERON:0001890!8.08e-09!41;UBERON:0006240!8.08e-09!41;UBERON:0002020!8.21e-09!34;UBERON:0003528!8.21e-09!34;UBERON:0001893!8.21e-09!34;UBERON:0002021!1.09e-08!5;UBERON:0001049!1.16e-08!57;UBERON:0005068!1.16e-08!57;UBERON:0006241!1.16e-08!57;UBERON:0007135!1.16e-08!57;UBERON:0003080!1.42e-08!42;UBERON:0000073!2.07e-08!94;UBERON:0001016!2.07e-08!94;UBERON:0000200!2.12e-07!6;UBERON:0002616!6.88e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.26e-27;8!UBERON:0003135;8.16e-20;11!UBERON:0000922;2.65e-13;49!UBERON:0000991;1.61e-10;21!UBERON:0003101;4.72e-10;22!UBERON:0000079;4.72e-10;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;4.26e-27;8!UBERON:0003135;8.16e-20;11!UBERON:0000922;2.65e-13;49!UBERON:0000991;1.61e-10;21!UBERON:0003101;4.72e-10;22!UBERON:0000079;4.72e-10;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.05e-27,8;UBERON:0003135,6.41e-20,11;UBERON:0000991,1.42e-10,21;UBERON:0009196,1.42e-10,21;UBERON:0009117,1.42e-10,21;UBERON:0005564,1.42e-10,21;UBERON:0004176,4.20e-10,22;UBERON:0003101,4.20e-10,22;UBERON:0000079,4.20e-10,22 | |||
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|short_description=p@chr19:36275677..36275698,+ | |short_description=p@chr19:36275677..36275698,+ | ||
}} | }} |
Latest revision as of 06:51, 26 July 2015
Short description: | p@chr19:36275677..36275698, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:36275677..36275698, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.82e-65 | 5 |
germ line cell | 4.52e-31 | 7 |
germ cell | 4.52e-31 | 7 |
neuron | 1.02e-20 | 6 |
neuroblast | 1.02e-20 | 6 |
electrically signaling cell | 1.02e-20 | 6 |
neuronal stem cell | 1.05e-15 | 8 |
melanocyte | 1.62e-12 | 10 |
melanoblast | 1.62e-12 | 10 |
pigment cell | 4.19e-09 | 14 |
neurectodermal cell | 1.49e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 3.05e-27 | 8 |
male reproductive organ | 6.41e-20 | 11 |
gonad | 1.42e-10 | 21 |
indifferent external genitalia | 1.42e-10 | 21 |
indifferent gonad | 1.42e-10 | 21 |
gonad primordium | 1.42e-10 | 21 |
external genitalia | 4.20e-10 | 22 |
male organism | 4.20e-10 | 22 |
male reproductive system | 4.20e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.35e-15 | 22 |
germ cell cancer | 3.35e-15 | 22 |