FFCP PHASE1:Hg19::chr19:55976108..55976119,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:55976108..55976119,- | |||
|coexpression_cluster_id=C157 | |coexpression_cluster_id=C157 | ||
|description=CAGE_peak_at_chr19:55976108..55976119,- | |description=CAGE_peak_at_chr19:55976108..55976119,- | ||
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|ontology_enrichment_celltype=CL:0002322!2.78e-66!5;CL:0000039!3.32e-31!7;CL:0000586!3.32e-31!7;CL:0000148!1.22e-12!10;CL:0000541!1.22e-12!10;CL:0000710!7.10e-11!20;CL:0000540!1.01e-09!6;CL:0000031!1.01e-09!6;CL:0000404!1.01e-09!6;CL:0000147!3.44e-09!14;CL:0000075!4.09e-08!27;CL:0000047!1.65e-07!8;CL:0000133!1.72e-07!59 | |ontology_enrichment_celltype=CL:0002322!2.78e-66!5;CL:0000039!3.32e-31!7;CL:0000586!3.32e-31!7;CL:0000148!1.22e-12!10;CL:0000541!1.22e-12!10;CL:0000710!7.10e-11!20;CL:0000540!1.01e-09!6;CL:0000031!1.01e-09!6;CL:0000404!1.01e-09!6;CL:0000147!3.44e-09!14;CL:0000075!4.09e-08!27;CL:0000047!1.65e-07!8;CL:0000133!1.72e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.47e-82;5!CL:0000039;1.50e-38;7!CL:0000586;1.50e-38;7!CL:0002321;1.43e-27;15!CL:0000148;1.54e-15;10!CL:0000540;8.13e-12;6!CL:0000404;8.13e-12;6!CL:0000147;2.77e-11;14!CL:0000710;4.51e-08;20 | |ontology_enrichment_celltype_v019=CL:0002322;4.47e-82;5!CL:0000039;1.50e-38;7!CL:0000586;1.50e-38;7!CL:0002321;1.43e-27;15!CL:0000148;1.54e-15;10!CL:0000540;8.13e-12;6!CL:0000404;8.13e-12;6!CL:0000147;2.77e-11;14!CL:0000710;4.51e-08;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.86e-82,5;CL:0000039,1.43e-38,7;CL:0000586,1.43e-38,7;CL:0000148,1.57e-15,10;CL:0000541,1.57e-15,10;CL:0000540,7.91e-12,6;CL:0000031,7.91e-12,6;CL:0000404,7.91e-12,6;CL:0000147,2.82e-11,14;CL:0000047,4.19e-09,8;CL:0000710,4.57e-08,20;CL:0000133,8.95e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.84e-27;10!UBERON:0005564;3.84e-27;10!CL:0000031;8.13e-12;6 | |ontology_enrichment_development_v019=UBERON:0009117;3.84e-27;10!UBERON:0005564;3.84e-27;10!CL:0000031;8.13e-12;6 | ||
|ontology_enrichment_disease=DOID:3095!1.41e-21!22;DOID:2994!1.41e-21!22 | |ontology_enrichment_disease=DOID:3095!1.41e-21!22;DOID:2994!1.41e-21!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;5.37e-19;22!DOID:2994;5.37e-19;22 | |ontology_enrichment_disease_v019=DOID:3095;5.37e-19;22!DOID:2994;5.37e-19;22 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,5.37e-19,22;DOID:2994,5.37e-19,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.33e-27!8;UBERON:0003135!5.28e-20!11;UBERON:0000991!5.42e-16!21;UBERON:0009196!5.42e-16!21;UBERON:0009117!5.42e-16!21;UBERON:0005564!5.42e-16!21;UBERON:0004176!2.89e-15!22;UBERON:0003101!3.82e-10!22;UBERON:0000079!3.82e-10!22;UBERON:0002323!2.85e-07!46;UBERON:0003133!5.80e-07!48;UBERON:0004458!8.08e-07!49 | |ontology_enrichment_uberon=UBERON:0000473!2.33e-27!8;UBERON:0003135!5.28e-20!11;UBERON:0000991!5.42e-16!21;UBERON:0009196!5.42e-16!21;UBERON:0009117!5.42e-16!21;UBERON:0005564!5.42e-16!21;UBERON:0004176!2.89e-15!22;UBERON:0003101!3.82e-10!22;UBERON:0000079!3.82e-10!22;UBERON:0002323!2.85e-07!46;UBERON:0003133!5.80e-07!48;UBERON:0004458!8.08e-07!49 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.45e-34;8!UBERON:0003135;1.02e-24;11!UBERON:0000922;9.79e-17;49!UBERON:0000991;3.91e-13;21!UBERON:0003101;1.49e-12;22!UBERON:0000079;1.49e-12;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;8.45e-34;8!UBERON:0003135;1.02e-24;11!UBERON:0000922;9.79e-17;49!UBERON:0000991;3.91e-13;21!UBERON:0003101;1.49e-12;22!UBERON:0000079;1.49e-12;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.10e-34,8;UBERON:0003135,9.90e-25,11;UBERON:0000991,3.85e-13,21;UBERON:0009196,3.85e-13,21;UBERON:0009117,3.85e-13,21;UBERON:0005564,3.85e-13,21;UBERON:0004176,1.47e-12,22;UBERON:0003101,1.47e-12,22;UBERON:0000079,1.47e-12,22 | |||
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|short_description=p@chr19:55976108..55976119,- | |short_description=p@chr19:55976108..55976119,- | ||
}} | }} |
Latest revision as of 17:31, 27 July 2015
Short description: | p@chr19:55976108..55976119, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55976108..55976119, - |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.86e-82 | 5 |
germ line cell | 1.43e-38 | 7 |
germ cell | 1.43e-38 | 7 |
melanocyte | 1.57e-15 | 10 |
melanoblast | 1.57e-15 | 10 |
neuron | 7.91e-12 | 6 |
neuroblast | 7.91e-12 | 6 |
electrically signaling cell | 7.91e-12 | 6 |
pigment cell | 2.82e-11 | 14 |
neuronal stem cell | 4.19e-09 | 8 |
neurecto-epithelial cell | 4.57e-08 | 20 |
neurectodermal cell | 8.95e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 8.10e-34 | 8 |
male reproductive organ | 9.90e-25 | 11 |
gonad | 3.85e-13 | 21 |
indifferent external genitalia | 3.85e-13 | 21 |
indifferent gonad | 3.85e-13 | 21 |
gonad primordium | 3.85e-13 | 21 |
external genitalia | 1.47e-12 | 22 |
male organism | 1.47e-12 | 22 |
male reproductive system | 1.47e-12 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.37e-19 | 22 |
germ cell cancer | 5.37e-19 | 22 |