FFCP PHASE1:Hg19::chr19:9121076..9121094,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:9121076..9121094,- | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_at_chr19:9121076..9121094,- | |description=CAGE_peak_at_chr19:9121076..9121094,- | ||
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|ontology_enrichment_celltype=CL:0000066!5.10e-11!254 | |ontology_enrichment_celltype=CL:0000066!5.10e-11!254 | ||
|ontology_enrichment_celltype_v019=CL:0000349;3.73e-13;19!CL:0002577;1.11e-07;3!CL:0002541;2.27e-07;3 | |ontology_enrichment_celltype_v019=CL:0000349;3.73e-13;19!CL:0002577;1.11e-07;3!CL:0002541;2.27e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.97e-13,19;CL:0000066,1.15e-08,253;CL:0002577,1.04e-07,3;CL:0002541,2.70e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.93e-07;86 | |ontology_enrichment_development_v019=UBERON:0006595;2.93e-07;86 | ||
|ontology_enrichment_disease=DOID:305!2.45e-21!106;DOID:0050687!5.61e-13!143;DOID:1749!3.13e-09!14 | |ontology_enrichment_disease=DOID:305!2.45e-21!106;DOID:0050687!5.61e-13!143;DOID:1749!3.13e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.07e-10;14!DOID:299;1.09e-08;25!DOID:305;9.08e-07;106 | |ontology_enrichment_disease_v019=DOID:1749;1.07e-10;14!DOID:299;1.09e-08;25!DOID:305;9.08e-07;106 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.66e-19,106;DOID:0050687,8.10e-13,143;DOID:1749,9.58e-11,14;DOID:299,9.06e-09,25;DOID:162,5.29e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.27e-14!169;UBERON:0000925!4.27e-14!169;UBERON:0006595!4.27e-14!169;UBERON:0005631!1.08e-13!14;UBERON:0000158!1.08e-13!14;UBERON:0000077!2.11e-13!130;UBERON:0001004!4.19e-12!72;UBERON:0003133!1.76e-11!48;UBERON:0005156!2.23e-11!59;UBERON:0000990!2.23e-11!59;UBERON:0001007!9.20e-11!155;UBERON:0001555!9.20e-11!155;UBERON:0007026!9.20e-11!155;UBERON:0004921!9.82e-11!129;UBERON:0004185!9.82e-11!129;UBERON:0003124!8.57e-10!7;UBERON:0001737!3.33e-09!9;UBERON:0001557!4.35e-09!19;UBERON:0004175!4.71e-09!25;UBERON:0001041!6.65e-09!98;UBERON:0003134!1.30e-08!37;UBERON:0000474!1.30e-08!37;UBERON:0000065!1.67e-08!53;UBERON:0003975!3.65e-08!22;UBERON:0005795!3.85e-08!22;UBERON:0003100!4.49e-08!41;UBERON:0000161!5.54e-08!35;UBERON:0000478!1.07e-07!24;UBERON:0000995!2.80e-07!21 | |ontology_enrichment_uberon=UBERON:0004119!4.27e-14!169;UBERON:0000925!4.27e-14!169;UBERON:0006595!4.27e-14!169;UBERON:0005631!1.08e-13!14;UBERON:0000158!1.08e-13!14;UBERON:0000077!2.11e-13!130;UBERON:0001004!4.19e-12!72;UBERON:0003133!1.76e-11!48;UBERON:0005156!2.23e-11!59;UBERON:0000990!2.23e-11!59;UBERON:0001007!9.20e-11!155;UBERON:0001555!9.20e-11!155;UBERON:0007026!9.20e-11!155;UBERON:0004921!9.82e-11!129;UBERON:0004185!9.82e-11!129;UBERON:0003124!8.57e-10!7;UBERON:0001737!3.33e-09!9;UBERON:0001557!4.35e-09!19;UBERON:0004175!4.71e-09!25;UBERON:0001041!6.65e-09!98;UBERON:0003134!1.30e-08!37;UBERON:0000474!1.30e-08!37;UBERON:0000065!1.67e-08!53;UBERON:0003975!3.65e-08!22;UBERON:0005795!3.85e-08!22;UBERON:0003100!4.49e-08!41;UBERON:0000161!5.54e-08!35;UBERON:0000478!1.07e-07!24;UBERON:0000995!2.80e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.10e-14;10!UBERON:0000158;1.10e-14;10!UBERON:0000478;7.94e-14;24!UBERON:0000474;3.73e-11;37!UBERON:0001987;1.39e-09;4!UBERON:0000305;3.27e-09;7!UBERON:0000974;7.84e-09;6!UBERON:0003100;1.67e-08;41!UBERON:0003134;1.01e-07;33!UBERON:0003124;2.27e-07;3!UBERON:0000920;2.27e-07;3!UBERON:0000161;4.05e-07;19!UBERON:0000166;4.05e-07;19!UBERON:0004175;4.82e-07;21!UBERON:0003975;7.27e-07;18 | |ontology_enrichment_uberon_v019=UBERON:0005631;1.10e-14;10!UBERON:0000158;1.10e-14;10!UBERON:0000478;7.94e-14;24!UBERON:0000474;3.73e-11;37!UBERON:0001987;1.39e-09;4!UBERON:0000305;3.27e-09;7!UBERON:0000974;7.84e-09;6!UBERON:0003100;1.67e-08;41!UBERON:0003134;1.01e-07;33!UBERON:0003124;2.27e-07;3!UBERON:0000920;2.27e-07;3!UBERON:0000161;4.05e-07;19!UBERON:0000166;4.05e-07;19!UBERON:0004175;4.82e-07;21!UBERON:0003975;7.27e-07;18 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.31e-22,14;UBERON:0000158,2.31e-22,14;UBERON:0003124,3.13e-15,7;UBERON:0000478,8.37e-14,24;UBERON:0003134,2.57e-13,37;UBERON:0000474,2.57e-13,37;UBERON:0003975,1.98e-12,22;UBERON:0005795,2.17e-12,22;UBERON:0004175,2.17e-12,25;UBERON:0003133,7.12e-12,48;UBERON:0003100,1.40e-11,41;UBERON:0005156,5.49e-11,59;UBERON:0000990,5.49e-11,59;UBERON:0000995,5.72e-11,21;UBERON:0001987,1.30e-09,4;UBERON:0004340,1.30e-09,4;UBERON:0000974,1.79e-09,10;UBERON:0000305,3.27e-09,7;UBERON:0004119,4.18e-09,160;UBERON:0000925,4.18e-09,160;UBERON:0006595,4.18e-09,160;UBERON:0001004,5.03e-08,74;UBERON:0004871,5.52e-08,8;UBERON:0001007,7.45e-08,145;UBERON:0001555,7.45e-08,145;UBERON:0007026,7.45e-08,145;UBERON:0004923,1.36e-07,66;UBERON:0000920,2.70e-07,3;UBERON:0000161,6.49e-07,36;UBERON:0003408,6.90e-07,10;UBERON:0004921,9.05e-07,118 | |||
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|short_description=p@chr19:9121076..9121094,- | |short_description=p@chr19:9121076..9121094,- | ||
}} | }} |
Latest revision as of 18:45, 27 July 2015
Short description: | p@chr19:9121076..9121094, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:9121076..9121094, - |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.97e-13 | 19 |
epithelial cell | 1.15e-08 | 253 |
placental epithelial cell | 1.04e-07 | 3 |
chorionic membrane mesenchymal stem cell | 2.70e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.31e-22 | 14 |
membranous layer | 2.31e-22 | 14 |
chorion | 3.13e-15 | 7 |
extraembryonic structure | 8.37e-14 | 24 |
female reproductive organ | 2.57e-13 | 37 |
female reproductive system | 2.57e-13 | 37 |
internal female genitalia | 1.98e-12 | 22 |
embryonic uterus | 2.17e-12 | 22 |
internal genitalia | 2.17e-12 | 25 |
reproductive organ | 7.12e-12 | 48 |
female organism | 1.40e-11 | 41 |
reproductive structure | 5.49e-11 | 59 |
reproductive system | 5.49e-11 | 59 |
uterus | 5.72e-11 | 21 |
placenta | 1.30e-09 | 4 |
allantois | 1.30e-09 | 4 |
neck | 1.79e-09 | 10 |
amnion | 3.27e-09 | 7 |
endoderm-derived structure | 4.18e-09 | 160 |
endoderm | 4.18e-09 | 160 |
presumptive endoderm | 4.18e-09 | 160 |
respiratory system | 5.03e-08 | 74 |
somatic layer of lateral plate mesoderm | 5.52e-08 | 8 |
digestive system | 7.45e-08 | 145 |
digestive tract | 7.45e-08 | 145 |
primitive gut | 7.45e-08 | 145 |
organ component layer | 1.36e-07 | 66 |
egg chorion | 2.70e-07 | 3 |
orifice | 6.49e-07 | 36 |
gland of gut | 6.90e-07 | 10 |
subdivision of digestive tract | 9.05e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.66e-19 | 106 |
cell type cancer | 8.10e-13 | 143 |
squamous cell carcinoma | 9.58e-11 | 14 |
adenocarcinoma | 9.06e-09 | 25 |
cancer | 5.29e-07 | 235 |