FFCP PHASE1:Hg19::chr2:128321491..128321509,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:128321491..128321509,+ | |||
|coexpression_cluster_id=C178 | |||
|description=CAGE_peak_at_chr2:128321491..128321509,+ | |||
|id=chr2:128321491..128321509,+ | |||
|ontology_enrichment_celltype=CL:0000738!7.58e-18!140;CL:0000784!1.69e-16!3;CL:0000875!2.82e-15!3;CL:0002396!2.82e-15!3;CL:0000037!1.77e-13!172;CL:0000566!1.77e-13!172;CL:0002087!3.42e-13!119;CL:0000988!1.99e-12!182;CL:0002031!4.35e-11!124;CL:0002057!6.24e-10!42;CL:0000766!1.13e-09!76;CL:0002032!2.46e-09!165;CL:0000837!2.46e-09!165;CL:0000860!3.79e-09!45;CL:0002393!7.65e-09!9;CL:0002397!7.65e-09!9;CL:0000767!7.90e-08!3;CL:0000839!1.23e-07!70;CL:0000842!1.30e-07!3;CL:0000557!1.68e-07!71;CL:0002194!2.88e-07!63;CL:0000576!2.88e-07!63;CL:0000040!2.88e-07!63;CL:0000559!2.88e-07!63;CL:0002009!5.52e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000784;3.66e-23;3!CL:0000451;2.55e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,3.27e-23,3;CL:0000451,2.47e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.64e-38;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!6.07e-12!7;UBERON:0002390!1.27e-11!102;UBERON:0003061!1.27e-11!102;UBERON:0002193!1.43e-11!112;UBERON:0002405!1.34e-08!115;UBERON:0002106!4.14e-08!3;UBERON:0004854!4.14e-08!3;UBERON:0009034!4.14e-08!3;UBERON:0002095!4.14e-08!3;UBERON:0004782!4.14e-08!3;UBERON:0003281!4.14e-08!3;UBERON:0009664!4.14e-08!3;UBERON:0002296!4.14e-08!3;UBERON:0005602!4.14e-08!3;UBERON:0001179!4.14e-08!3;UBERON:0006293!4.14e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;7.79e-88;3!UBERON:0004177;2.51e-53;5!UBERON:0005057;2.51e-53;5!UBERON:0002075;8.72e-16;18!UBERON:0000077;6.40e-11;27!UBERON:0002405;6.40e-11;27!UBERON:0002390;2.74e-09;32!UBERON:0004458;7.82e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,9.74e-88,3;UBERON:0004854,9.74e-88,3;UBERON:0009034,9.74e-88,3;UBERON:0002095,9.74e-88,3;UBERON:0004782,9.74e-88,3;UBERON:0003281,9.74e-88,3;UBERON:0009664,9.74e-88,3;UBERON:0002296,9.74e-88,3;UBERON:0005602,9.74e-88,3;UBERON:0001179,9.74e-88,3;UBERON:0006293,9.74e-88,3;UBERON:0004177,1.80e-38,7;UBERON:0005057,1.80e-38,7;UBERON:0000945,7.68e-34,8;UBERON:0010039,7.68e-34,8;UBERON:0004457,5.14e-23,12;UBERON:0000042,5.14e-23,12;UBERON:0003887,5.14e-23,12;UBERON:0002075,9.05e-16,18;UBERON:0005409,2.77e-11,25;UBERON:0000077,3.10e-10,29;UBERON:0002323,7.52e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.236132343941038,0.393364276848904,0,0.309632246632152,0,0,0,0,0.142169232487422,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0.285012743741249,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0.953962497221368,1.71598473234038,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0,0,3.57138888323444,1.61144719933943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.620747142958579,0,0,0.202117188958219,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0.961705476909699 | |||
|short_description=p@chr2:128321491..128321509,+ | |||
}} |
Latest revision as of 00:08, 29 July 2015
Short description: | p@chr2:128321491..128321509, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:128321491..128321509, + |
Coexpression cluster: | C178_spleen_liver_Hepatocyte_b_lymph_vein_thymus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 3.27e-23 | 3 |
dendritic cell | 2.47e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
spleen | 9.74e-88 | 3 |
gastrointestinal system mesentery | 9.74e-88 | 3 |
stomach region | 9.74e-88 | 3 |
mesentery | 9.74e-88 | 3 |
gastrointestinal system serosa | 9.74e-88 | 3 |
mesentery of stomach | 9.74e-88 | 3 |
gut mesentery | 9.74e-88 | 3 |
dorsal mesentery | 9.74e-88 | 3 |
dorsal mesogastrium | 9.74e-88 | 3 |
peritoneal cavity | 9.74e-88 | 3 |
spleen primordium | 9.74e-88 | 3 |
hemopoietic organ | 1.80e-38 | 7 |
immune organ | 1.80e-38 | 7 |
stomach | 7.68e-34 | 8 |
food storage organ | 7.68e-34 | 8 |
cavity lining | 5.14e-23 | 12 |
serous membrane | 5.14e-23 | 12 |
intraembryonic coelom | 5.14e-23 | 12 |
viscus | 9.05e-16 | 18 |
gastrointestinal system | 2.77e-11 | 25 |
mixed endoderm/mesoderm-derived structure | 3.10e-10 | 29 |
body cavity | 7.52e-07 | 46 |