FFCP PHASE1:Hg19::chr2:28785672..28785682,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:28785672..28785682,+ | |||
|coexpression_cluster_id=C97 | |coexpression_cluster_id=C97 | ||
|description=CAGE_peak_at_chr2:28785672..28785682,+ | |description=CAGE_peak_at_chr2:28785672..28785682,+ | ||
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|ontology_enrichment_celltype=CL:0002159!7.99e-37!13;CL:0000362!1.38e-18!8;CL:0000240!6.03e-18!6;CL:0000311!6.03e-18!6;CL:0000079!6.03e-18!6;CL:0000237!6.03e-18!6;CL:0000036!6.03e-18!6;CL:0000357!6.03e-18!6;CL:0000114!6.03e-18!6;CL:0002076!8.59e-16!43;CL:0000312!4.61e-14!5;CL:0000066!6.75e-14!254;CL:0002077!4.37e-13!33;CL:0002166!4.71e-13!3;CL:0002621!4.71e-13!3;CL:0000223!2.48e-12!59;CL:0002368!8.04e-11!13;CL:0002327!3.50e-10!4;CL:0000076!5.84e-10!62;CL:0000575!2.43e-09!2;CL:0000317!3.53e-09!2;CL:1000448!3.53e-09!2;CL:0002308!3.53e-09!2;CL:0002140!3.53e-09!2;CL:0002251!6.12e-09!21;CL:0002202!1.53e-07!9;CL:0002632!1.53e-07!9 | |ontology_enrichment_celltype=CL:0002159!7.99e-37!13;CL:0000362!1.38e-18!8;CL:0000240!6.03e-18!6;CL:0000311!6.03e-18!6;CL:0000079!6.03e-18!6;CL:0000237!6.03e-18!6;CL:0000036!6.03e-18!6;CL:0000357!6.03e-18!6;CL:0000114!6.03e-18!6;CL:0002076!8.59e-16!43;CL:0000312!4.61e-14!5;CL:0000066!6.75e-14!254;CL:0002077!4.37e-13!33;CL:0002166!4.71e-13!3;CL:0002621!4.71e-13!3;CL:0000223!2.48e-12!59;CL:0002368!8.04e-11!13;CL:0002327!3.50e-10!4;CL:0000076!5.84e-10!62;CL:0000575!2.43e-09!2;CL:0000317!3.53e-09!2;CL:1000448!3.53e-09!2;CL:0002308!3.53e-09!2;CL:0002140!3.53e-09!2;CL:0002251!6.12e-09!21;CL:0002202!1.53e-07!9;CL:0002632!1.53e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000240;1.61e-19;6!CL:0000311;1.61e-19;6!CL:0000079;1.61e-19;6!CL:0000237;1.61e-19;6!CL:0002621;2.94e-17;3!CL:0002336;6.65e-14;1!CL:0002261;6.65e-14;1!CL:0002170;6.65e-14;1!CL:0002076;1.26e-13;42!CL:0002327;1.62e-13;4!CL:0000312;4.33e-11;5!CL:0002251;3.22e-10;20!CL:0002159;1.24e-08;14 | |ontology_enrichment_celltype_v019=CL:0000240;1.61e-19;6!CL:0000311;1.61e-19;6!CL:0000079;1.61e-19;6!CL:0000237;1.61e-19;6!CL:0002621;2.94e-17;3!CL:0002336;6.65e-14;1!CL:0002261;6.65e-14;1!CL:0002170;6.65e-14;1!CL:0002076;1.26e-13;42!CL:0002327;1.62e-13;4!CL:0000312;4.33e-11;5!CL:0002251;3.22e-10;20!CL:0002159;1.24e-08;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0000240,1.42e-19,6;CL:0000311,1.42e-19,6;CL:0000079,1.42e-19,6;CL:0000237,1.42e-19,6;CL:0000036,1.42e-19,6;CL:0000357,1.42e-19,6;CL:0000114,1.42e-19,6;CL:0002621,3.78e-17,3;CL:0002336,7.55e-14,1;CL:0002261,7.55e-14,1;CL:0002170,7.55e-14,1;CL:0002076,8.91e-14,42;CL:0002327,1.72e-13,4;CL:0000312,3.72e-11,5;CL:0002251,3.55e-10,20;CL:0000223,8.06e-10,58;CL:0002159,1.06e-08,14;CL:0000066,6.81e-08,253 | |||
|ontology_enrichment_development_v019=CL:0000357;1.61e-19;6!CL:0000114;1.61e-19;6 | |ontology_enrichment_development_v019=CL:0000357;1.61e-19;6!CL:0000114;1.61e-19;6 | ||
|ontology_enrichment_disease=DOID:1749!5.14e-07!14 | |ontology_enrichment_disease=DOID:1749!5.14e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;3.98e-14;1!DOID:3149;3.98e-14;1!DOID:3451;1.05e-07;2!DOID:4159;1.05e-07;2!DOID:0060122;1.05e-07;2 | |ontology_enrichment_disease_v019=DOID:3151;3.98e-14;1!DOID:3149;3.98e-14;1!DOID:3451;1.05e-07;2!DOID:4159;1.05e-07;2!DOID:0060122;1.05e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3151,4.53e-14,1;DOID:3149,4.53e-14,1;DOID:3451,1.12e-07,2;DOID:4159,1.12e-07,2;DOID:0060122,1.12e-07,2 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001949,3.78e-17,3;UBERON:0003729,1.65e-15,13;UBERON:0001911,1.72e-13,4;UBERON:0005333,1.72e-13,4;UBERON:0008425,1.72e-13,4;UBERON:0005311,1.72e-13,4;UBERON:0000344,3.55e-10,20;UBERON:0003102,3.66e-09,99;UBERON:0005153,2.27e-08,37;UBERON:0004807,2.55e-07,28;UBERON:0000076,3.45e-07,8;UBERON:0000165,4.43e-07,29;UBERON:0000930,4.43e-07,29;UBERON:0003350,5.30e-07,8;UBERON:0001828,5.30e-07,8 | |||
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| ||
|short_description=p@chr2:28785672..28785682,+ | |short_description=p@chr2:28785672..28785682,+ | ||
}} | }} |
Latest revision as of 09:22, 29 July 2015
Short description: | p@chr2:28785672..28785682, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:28785672..28785682, + |
Coexpression cluster: | C97_small_smallcell_gastrointestinal_argyrophil_putamen_duodenum_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelial cell | 1.42e-19 | 6 |
keratin accumulating cell | 1.42e-19 | 6 |
stratified epithelial cell | 1.42e-19 | 6 |
keratinizing barrier epithelial cell | 1.42e-19 | 6 |
epithelial fate stem cell | 1.42e-19 | 6 |
stratified epithelial stem cell | 1.42e-19 | 6 |
surface ectodermal cell | 1.42e-19 | 6 |
gingival epithelial cell | 3.78e-17 | 3 |
buccal mucosa cell | 7.55e-14 | 1 |
endothelial cell of viscerocranial mucosa | 7.55e-14 | 1 |
keratinized cell of the oral mucosa | 7.55e-14 | 1 |
endo-epithelial cell | 8.91e-14 | 42 |
mammary gland epithelial cell | 1.72e-13 | 4 |
keratinocyte | 3.72e-11 | 5 |
epithelial cell of alimentary canal | 3.55e-10 | 20 |
endodermal cell | 8.06e-10 | 58 |
general ecto-epithelial cell | 1.06e-08 | 14 |
epithelial cell | 6.81e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 3.78e-17 | 3 |
mouth mucosa | 1.65e-15 | 13 |
mammary gland | 1.72e-13 | 4 |
mammary bud | 1.72e-13 | 4 |
mammary ridge | 1.72e-13 | 4 |
mammary placode | 1.72e-13 | 4 |
mucosa | 3.55e-10 | 20 |
surface structure | 3.66e-09 | 99 |
epithelial bud | 2.27e-08 | 37 |
respiratory system epithelium | 2.55e-07 | 28 |
external ectoderm | 3.45e-07 | 8 |
mouth | 4.43e-07 | 29 |
stomodeum | 4.43e-07 | 29 |
epithelium of mucosa | 5.30e-07 | 8 |
gingiva | 5.30e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 4.53e-14 | 1 |
keratoacanthoma | 4.53e-14 | 1 |
skin carcinoma | 1.12e-07 | 2 |
skin cancer | 1.12e-07 | 2 |
integumentary system cancer | 1.12e-07 | 2 |