FFCP PHASE1:Hg19::chr2:66789201..66789212,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:66789201..66789212,+ | |||
|coexpression_cluster_id=C1912 | |coexpression_cluster_id=C1912 | ||
|description=CAGE_peak_at_chr2:66789201..66789212,+ | |description=CAGE_peak_at_chr2:66789201..66789212,+ | ||
|id=chr2:66789201..66789212,+ | |id=chr2:66789201..66789212,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;6.25e-07;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;7.72e-08;14!DOID:171;3.88e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.16e-08,14;DOID:171,4.00e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.52e-15!115;UBERON:0000924!6.60e-09!173;UBERON:0006601!6.60e-09!173;UBERON:0000475!1.07e-08!365;UBERON:0000955!1.68e-08!69;UBERON:0006238!1.68e-08!69;UBERON:0000073!1.77e-08!94;UBERON:0001016!1.77e-08!94;UBERON:0001049!2.14e-08!57;UBERON:0005068!2.14e-08!57;UBERON:0006241!2.14e-08!57;UBERON:0007135!2.14e-08!57;UBERON:0004121!6.79e-08!169;UBERON:0002346!8.53e-08!90;UBERON:0000062!1.17e-07!511;UBERON:0000033!1.33e-07!123;UBERON:0000153!1.78e-07!129;UBERON:0007811!1.78e-07!129;UBERON:0005156!4.12e-07!59;UBERON:0000990!4.12e-07!59 | |ontology_enrichment_uberon=UBERON:0007023!4.52e-15!115;UBERON:0000924!6.60e-09!173;UBERON:0006601!6.60e-09!173;UBERON:0000475!1.07e-08!365;UBERON:0000955!1.68e-08!69;UBERON:0006238!1.68e-08!69;UBERON:0000073!1.77e-08!94;UBERON:0001016!1.77e-08!94;UBERON:0001049!2.14e-08!57;UBERON:0005068!2.14e-08!57;UBERON:0006241!2.14e-08!57;UBERON:0007135!2.14e-08!57;UBERON:0004121!6.79e-08!169;UBERON:0002346!8.53e-08!90;UBERON:0000062!1.17e-07!511;UBERON:0000033!1.33e-07!123;UBERON:0000153!1.78e-07!129;UBERON:0007811!1.78e-07!129;UBERON:0005156!4.12e-07!59;UBERON:0000990!4.12e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.33e-09;33!UBERON:0000160;2.97e-09;17!UBERON:0005409;1.46e-07;22!UBERON:0000059;2.96e-07;11!UBERON:0001044;3.01e-07;6!UBERON:0003293;3.01e-07;6!UBERON:0003294;3.01e-07;6!UBERON:0010047;3.01e-07;6!UBERON:0003408;3.01e-07;6!UBERON:0000167;3.01e-07;6!UBERON:0001155;3.95e-07;9!UBERON:0000013;6.25e-07;5!UBERON:0002410;6.25e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.06e-11,114;UBERON:0011216,6.04e-10,223;UBERON:0000160,1.88e-09,17;UBERON:0002346,2.64e-08,86;UBERON:0004121,8.98e-08,171;UBERON:0000924,8.98e-08,171;UBERON:0006601,8.98e-08,171;UBERON:0000059,1.84e-07,11;UBERON:0001155,2.33e-07,9;UBERON:0001044,2.35e-07,6;UBERON:0003293,2.35e-07,6;UBERON:0003294,2.35e-07,6;UBERON:0010047,2.35e-07,6;UBERON:0000167,2.35e-07,6;UBERON:0003075,3.75e-07,82;UBERON:0007284,3.75e-07,82;UBERON:0000013,6.43e-07,5;UBERON:0002410,6.43e-07,5 | |||
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| ||
|short_description=p@chr2:66789201..66789212,+ | |short_description=p@chr2:66789201..66789212,+ | ||
}} | }} |
Latest revision as of 11:33, 29 July 2015
Short description: | p@chr2:66789201..66789212, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:66789201..66789212, + |
Coexpression cluster: | C1912_uterus_cervix_rectum_cerebellum_neuroepithelioma_sacrococcigeal_neuroectodermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.06e-11 | 114 |
organ system subdivision | 6.04e-10 | 223 |
intestine | 1.88e-09 | 17 |
neurectoderm | 2.64e-08 | 86 |
ectoderm-derived structure | 8.98e-08 | 171 |
ectoderm | 8.98e-08 | 171 |
presumptive ectoderm | 8.98e-08 | 171 |
large intestine | 1.84e-07 | 11 |
colon | 2.33e-07 | 9 |
saliva-secreting gland | 2.35e-07 | 6 |
gland of oral region | 2.35e-07 | 6 |
gland of foregut | 2.35e-07 | 6 |
oral gland | 2.35e-07 | 6 |
oral cavity | 2.35e-07 | 6 |
neural plate | 3.75e-07 | 82 |
presumptive neural plate | 3.75e-07 | 82 |
sympathetic nervous system | 6.43e-07 | 5 |
autonomic nervous system | 6.43e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.16e-08 | 14 |
neuroectodermal tumor | 4.00e-07 | 10 |