FFCP PHASE1:Hg19::chr2:69408193..69408204,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:69408193..69408204,+ | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_at_chr2:69408193..69408204,+ | |description=CAGE_peak_at_chr2:69408193..69408204,+ | ||
|id=chr2:69408193..69408204,+ | |id=chr2:69408193..69408204,+ | ||
|ontology_enrichment_celltype=CL:0002541!1.71e-25!3;CL:0000181!3.17e-11!12;CL:0000417!3.17e-11!12;CL:0000668!3.17e-11!12;CL:0000414!3.17e-11!12;CL:0000412!3.17e-11!12;CL:0000182!3.17e-11!12;CL:0002174!1.43e-09!1;CL:0000501!1.43e-09!1 | |ontology_enrichment_celltype=CL:0002541!1.71e-25!3;CL:0000181!3.17e-11!12;CL:0000417!3.17e-11!12;CL:0000668!3.17e-11!12;CL:0000414!3.17e-11!12;CL:0000412!3.17e-11!12;CL:0000182!3.17e-11!12;CL:0002174!1.43e-09!1;CL:0000501!1.43e-09!1 | ||
|ontology_enrichment_celltype_v019=CL:0002541;6.39e-53;3!CL:0000182;1.81e-30;12!CL:0000349;2.56e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.39e-53,3;CL:0000182,1.81e-30,12;CL:0000349,2.56e-09,19;CL:0000223,5.78e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.85e-33;11!UBERON:0009497;3.33e-28;13!UBERON:0001041;9.49e-13;30!UBERON:0003104;4.20e-12;31 | |||
|ontology_enrichment_disease=DOID:5662!3.83e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:7;1.99e-10;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,5.37e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0000476!1.71e-25!3;UBERON:0000920!1.71e-25!3;UBERON:0003124!6.34e-19!7;UBERON:0005631!1.64e-14!14;UBERON:0000158!1.64e-14!14;UBERON:0000478!8.33e-12!24;UBERON:0002135!2.16e-09!1;UBERON:0006834!2.55e-09!1;UBERON:0005057!1.15e-07!26;UBERON:0002107!3.93e-07!19;UBERON:0006925!3.93e-07!19;UBERON:0008836!3.93e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;6.39e-53;3!UBERON:0000920;6.39e-53;3!UBERON:0002107;1.31e-19;19!UBERON:0006925;1.31e-19;19!UBERON:0005631;9.54e-17;10!UBERON:0000158;9.54e-17;10!UBERON:0002423;3.99e-15;25!UBERON:0002365;1.84e-11;31!UBERON:0002330;1.84e-11;31!UBERON:0002368;8.13e-11;33!UBERON:0000949;1.69e-08;43!UBERON:0000478;1.40e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.39e-53,3;UBERON:0003124,2.02e-23,7;UBERON:0002107,1.31e-19,19;UBERON:0006925,1.31e-19,19;UBERON:0008836,1.31e-19,19;UBERON:0008835,4.60e-17,22;UBERON:0003894,4.60e-17,22;UBERON:0009854,2.31e-16,23;UBERON:0007499,3.99e-15,25;UBERON:0009497,3.99e-15,25;UBERON:0000015,3.99e-15,25;UBERON:0002423,3.99e-15,25;UBERON:0006235,3.99e-15,25;UBERON:0004161,3.99e-15,25;UBERON:0009856,1.41e-14,26;UBERON:0002365,2.30e-12,31;UBERON:0002330,2.30e-12,31;UBERON:0005631,2.82e-12,14;UBERON:0000158,2.82e-12,14;UBERON:0002368,4.78e-11,35;UBERON:0000949,9.12e-09,45;UBERON:0000478,1.40e-07,24;UBERON:0003929,1.99e-07,54;UBERON:0005172,1.99e-07,54;UBERON:0005173,1.99e-07,54;UBERON:0002530,7.38e-07,59;UBERON:0002417,9.34e-07,60;UBERON:0000916,9.34e-07,60 | |||
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|short_description=p@chr2:69408193..69408204,+ | |short_description=p@chr2:69408193..69408204,+ | ||
}} | }} |
Latest revision as of 11:43, 29 July 2015
Short description: | p@chr2:69408193..69408204, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:69408193..69408204, + |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.39e-53 | 3 |
hepatocyte | 1.81e-30 | 12 |
extraembryonic cell | 2.56e-09 | 19 |
endodermal cell | 5.78e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.39e-53 | 3 |
chorion | 2.02e-23 | 7 |
liver | 1.31e-19 | 19 |
digestive gland | 1.31e-19 | 19 |
liver bud | 1.31e-19 | 19 |
hepatic diverticulum | 4.60e-17 | 22 |
liver primordium | 4.60e-17 | 22 |
digestive tract diverticulum | 2.31e-16 | 23 |
epithelial sac | 3.99e-15 | 25 |
epithelium of foregut-midgut junction | 3.99e-15 | 25 |
anatomical boundary | 3.99e-15 | 25 |
hepatobiliary system | 3.99e-15 | 25 |
foregut-midgut junction | 3.99e-15 | 25 |
septum transversum | 3.99e-15 | 25 |
sac | 1.41e-14 | 26 |
exocrine gland | 2.30e-12 | 31 |
exocrine system | 2.30e-12 | 31 |
extraembryonic membrane | 2.82e-12 | 14 |
membranous layer | 2.82e-12 | 14 |
endocrine gland | 4.78e-11 | 35 |
endocrine system | 9.12e-09 | 45 |
extraembryonic structure | 1.40e-07 | 24 |
gut epithelium | 1.99e-07 | 54 |
abdomen element | 1.99e-07 | 54 |
abdominal segment element | 1.99e-07 | 54 |
gland | 7.38e-07 | 59 |
abdominal segment of trunk | 9.34e-07 | 60 |
abdomen | 9.34e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 5.37e-10 | 39 |