FFCP PHASE1:Hg19::chr3:111584345..111584377,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:111584345..111584377,+ | |||
|coexpression_cluster_id=C91 | |||
|description=CAGE_peak_at_chr3:111584345..111584377,+ | |description=CAGE_peak_at_chr3:111584345..111584377,+ | ||
|id=chr3:111584345..111584377,+ | |id=chr3:111584345..111584377,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:1000306;1.34e-24;4!CL:0002547;1.34e-24;4!CL:0000319;9.60e-12;1!CL:0002594;2.36e-11;4!CL:0000359;1.40e-07;32!CL:0000048;7.45e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:1000306,1.19e-24,4;CL:0002547,1.19e-24,4;CL:0000319,5.05e-12,1;CL:0002594,3.41e-11,4;CL:0000359,4.43e-08,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!5.64e-24!14;DOID:120!2.30e-18!27;DOID:193!9.37e-17!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.11e-27;14!DOID:120;1.00e-13;27!DOID:193;9.42e-13;29!DOID:3030;9.60e-12;1!DOID:3571;9.60e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.60e-26,14;DOID:120,1.33e-13,27;DOID:193,1.23e-12,29;DOID:3030,5.05e-12,1;DOID:3571,1.07e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0003914!3.53e-12!118;UBERON:0000992!4.37e-12!13;UBERON:0002118!4.74e-11!5;UBERON:0004532!4.74e-11!5;UBERON:0004872!1.86e-10!84;UBERON:0001981!1.27e-09!60;UBERON:0007500!1.27e-09!60;UBERON:0004537!1.27e-09!60;UBERON:0006965!1.27e-09!60;UBERON:0001009!1.56e-09!113;UBERON:0000055!1.63e-08!69;UBERON:0004535!1.77e-08!110;UBERON:0002049!1.96e-08!79;UBERON:0007798!1.96e-08!79;UBERON:0004176!1.10e-07!22;UBERON:0001637!8.00e-07!42;UBERON:0003509!8.00e-07!42;UBERON:0004572!8.00e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.34e-24;4!UBERON:0000415;1.34e-24;4!UBERON:0007240;1.34e-24;4!UBERON:0005742;1.34e-24;4!UBERON:0005734;1.34e-24;4!UBERON:0004664;1.34e-24;4!UBERON:0004663;1.34e-24;4!UBERON:0000992;3.70e-20;13!UBERON:0002118;2.79e-19;5!UBERON:0000947;1.31e-12;21!UBERON:0010191;1.31e-12;21!UBERON:0000991;1.84e-12;21!UBERON:0001637;8.65e-12;42!UBERON:0003509;8.65e-12;42!UBERON:0004572;8.65e-12;42!UBERON:0002119;9.88e-12;4!UBERON:0001310;2.36e-11;4!UBERON:0004573;1.26e-10;33!UBERON:0004571;1.26e-10;33!UBERON:0003134;1.52e-07;33!UBERON:0007500;1.59e-07;56!UBERON:0001981;1.59e-07;56!UBERON:0004537;1.59e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,1.19e-24,4;UBERON:0007240,1.19e-24,4;UBERON:0005742,1.19e-24,4;UBERON:0005734,1.19e-24,4;UBERON:0004664,1.19e-24,4;UBERON:0004663,1.19e-24,4;UBERON:0000992,6.11e-20,13;UBERON:0002118,6.31e-19,5;UBERON:0001637,3.94e-15,42;UBERON:0003509,3.94e-15,42;UBERON:0004572,3.94e-15,42;UBERON:0004797,2.31e-14,7;UBERON:0000947,1.23e-12,21;UBERON:0010191,1.23e-12,21;UBERON:0000991,2.50e-12,21;UBERON:0009196,2.50e-12,21;UBERON:0009117,2.50e-12,21;UBERON:0005564,2.50e-12,21;UBERON:0004176,9.14e-12,22;UBERON:0002119,9.63e-12,4;UBERON:0004573,3.10e-11,33;UBERON:0004571,3.10e-11,33;UBERON:0001310,3.41e-11,4;UBERON:0007500,1.65e-10,59;UBERON:0001981,1.65e-10,59;UBERON:0004537,1.65e-10,59;UBERON:0006965,1.65e-10,59;UBERON:0004872,4.01e-09,83;UBERON:0000055,5.41e-09,68;UBERON:0002049,1.02e-07,78;UBERON:0007798,1.02e-07,78;UBERON:0003914,1.34e-07,117;UBERON:0003134,6.04e-07,37;UBERON:0000474,6.04e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0.993943903390637,1.51956613997496,16.948375144092,2.0078563452417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794025282120147,0.538168907066586,0,0,0,0,0.515281080091258,0,0.506328996723799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,1.44331342025273,0,0.587043471179108,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0.57191197463259,0,0,0,0.355391948742546,0,0,1.74306691720059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.633309773357254,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0.976135183992909,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,6.2962469366128,0,0,0,0,0.55597265731176,1.5743737541619,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21746226177622,0,0,0.143411352204052,0.196498082026242,1.426684205925,0,0.422215270595328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0,0.398495976502139,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0,0,0.195984794828755,0.174118413160805,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372757606696298,0,0.271808412147228,0.104602846312333,0.305994652908965,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0.223171457441873,0.335917362433631,1.44119953416961,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0.754703705257725,0,0.228840068396924,0,0.621748802331122,1.92211694986524,2.23015474029183,0,3.26052209440145,0.829412415681711,0.797525143673985,0.521745061811734,4.20721305192212,0.761610424337591,1.22061219961398,0.363697318405119,0.537052785212442,1.39210127963548,1.19428766609585,0,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0.489473409012935,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96618327002975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,0,0.3414369541879,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0.533636729388577,0,0,0,0,0,0,0,0 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| ||
|short_description=p@chr3:111584345..111584377,+ | |short_description=p@chr3:111584345..111584377,+ | ||
}} | }} |
Latest revision as of 14:12, 29 July 2015
Short description: | p@chr3:111584345..111584377, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:111584345..111584377, + |
Coexpression cluster: | C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of tunica adventitia of artery | 1.19e-24 | 4 |
fibroblast of the aortic adventitia | 1.19e-24 | 4 |
mucus secreting cell | 5.05e-12 | 1 |
smooth muscle cell of the umbilical artery | 3.41e-11 | 4 |
vascular associated smooth muscle cell | 4.43e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
artery wall | 1.19e-24 | 4 |
tunica adventitia of artery | 1.19e-24 | 4 |
adventitia | 1.19e-24 | 4 |
tunica adventitia of blood vessel | 1.19e-24 | 4 |
aorta tunica adventitia | 1.19e-24 | 4 |
aorta wall | 1.19e-24 | 4 |
female gonad | 6.11e-20 | 13 |
right ovary | 6.31e-19 | 5 |
artery | 3.94e-15 | 42 |
arterial blood vessel | 3.94e-15 | 42 |
arterial system | 3.94e-15 | 42 |
blood vessel layer | 2.31e-14 | 7 |
aorta | 1.23e-12 | 21 |
aortic system | 1.23e-12 | 21 |
gonad | 2.50e-12 | 21 |
indifferent external genitalia | 2.50e-12 | 21 |
indifferent gonad | 2.50e-12 | 21 |
gonad primordium | 2.50e-12 | 21 |
external genitalia | 9.14e-12 | 22 |
left ovary | 9.63e-12 | 4 |
systemic artery | 3.10e-11 | 33 |
systemic arterial system | 3.10e-11 | 33 |
umbilical artery | 3.41e-11 | 4 |
epithelial tube open at both ends | 1.65e-10 | 59 |
blood vessel | 1.65e-10 | 59 |
blood vasculature | 1.65e-10 | 59 |
vascular cord | 1.65e-10 | 59 |
splanchnic layer of lateral plate mesoderm | 4.01e-09 | 83 |
vessel | 5.41e-09 | 68 |
vasculature | 1.02e-07 | 78 |
vascular system | 1.02e-07 | 78 |
epithelial tube | 1.34e-07 | 117 |
female reproductive organ | 6.04e-07 | 37 |
female reproductive system | 6.04e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.60e-26 | 14 |
female reproductive organ cancer | 1.33e-13 | 27 |
reproductive organ cancer | 1.23e-12 | 29 |
mucinous adenocarcinoma | 5.05e-12 | 1 |
liver cancer | 1.07e-11 | 1 |