FFCP PHASE1:Hg19::chr3:165178174..165178192,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:165178174..165178192,+ | |||
|coexpression_cluster_id=C4301 | |coexpression_cluster_id=C4301 | ||
|description=CAGE_peak_at_chr3:165178174..165178192,+ | |description=CAGE_peak_at_chr3:165178174..165178192,+ | ||
|id=chr3:165178174..165178192,+ | |id=chr3:165178174..165178192,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.41e-31!254;CL:0002076!1.39e-16!43;CL:0000223!1.24e-12!59;CL:0002368!1.51e-10!13;CL:0000063!1.65e-08!578;CL:0002202!1.85e-07!9;CL:0002632!1.85e-07!9;CL:0002159!2.45e-07!13;CL:1000497!8.75e-07!18;CL:0002518!8.75e-07!18 | |ontology_enrichment_celltype=CL:0000066!3.41e-31!254;CL:0002076!1.39e-16!43;CL:0000223!1.24e-12!59;CL:0002368!1.51e-10!13;CL:0000063!1.65e-08!578;CL:0002202!1.85e-07!9;CL:0002632!1.85e-07!9;CL:0002159!2.45e-07!13;CL:1000497!8.75e-07!18;CL:0002518!8.75e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.12e-11;13!CL:0002202;4.06e-09;9!CL:0002632;4.06e-09;9!CL:0002076;1.64e-08;42!CL:0002536;5.39e-08;2!CL:0002537;5.51e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.38e-23,253;CL:0002368,9.56e-12,13;CL:0002076,1.50e-10,42;CL:0002202,3.35e-09,9;CL:0002632,3.35e-09,9;CL:0000223,4.44e-08,58;CL:0002536,6.64e-08,2;CL:0002537,5.86e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.68e-07;29 | |||
|ontology_enrichment_disease=DOID:305!4.41e-19!106;DOID:0050687!1.90e-14!143;DOID:1749!2.08e-10!14;DOID:14566!3.64e-07!239;DOID:162!4.04e-07!235 | |ontology_enrichment_disease=DOID:305!4.41e-19!106;DOID:0050687!1.90e-14!143;DOID:1749!2.08e-10!14;DOID:14566!3.64e-07!239;DOID:162!4.04e-07!235 | ||
|ontology_enrichment_disease_v019=DOID:1749;7.56e-12;14!DOID:4468;2.98e-08;2!DOID:4929;7.86e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.44e-18,106;DOID:0050687,7.46e-13,143;DOID:1749,6.98e-12,14;DOID:4468,2.78e-08,2;DOID:4929,5.79e-08,2;DOID:162,6.72e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.20e-16!9;UBERON:0004119!7.16e-12!169;UBERON:0000925!7.16e-12!169;UBERON:0006595!7.16e-12!169;UBERON:0005631!9.26e-12!14;UBERON:0000158!9.26e-12!14;UBERON:0001004!1.53e-11!72;UBERON:0000065!2.67e-11!53;UBERON:0008947!3.19e-10!38;UBERON:0003258!3.19e-10!38;UBERON:0000072!6.34e-10!46;UBERON:0001557!3.13e-08!19;UBERON:0006554!7.40e-08!44;UBERON:0001007!1.26e-07!155;UBERON:0001555!1.26e-07!155;UBERON:0007026!1.26e-07!155;UBERON:0001008!1.37e-07!45;UBERON:0000305!1.68e-07!7;UBERON:0000064!1.76e-07!219;UBERON:0007196!1.91e-07!14;UBERON:0001558!1.91e-07!14;UBERON:0000077!3.45e-07!130 | |ontology_enrichment_uberon=UBERON:0001737!2.20e-16!9;UBERON:0004119!7.16e-12!169;UBERON:0000925!7.16e-12!169;UBERON:0006595!7.16e-12!169;UBERON:0005631!9.26e-12!14;UBERON:0000158!9.26e-12!14;UBERON:0001004!1.53e-11!72;UBERON:0000065!2.67e-11!53;UBERON:0008947!3.19e-10!38;UBERON:0003258!3.19e-10!38;UBERON:0000072!6.34e-10!46;UBERON:0001557!3.13e-08!19;UBERON:0006554!7.40e-08!44;UBERON:0001007!1.26e-07!155;UBERON:0001555!1.26e-07!155;UBERON:0007026!1.26e-07!155;UBERON:0001008!1.37e-07!45;UBERON:0000305!1.68e-07!7;UBERON:0000064!1.76e-07!219;UBERON:0007196!1.91e-07!14;UBERON:0001558!1.91e-07!14;UBERON:0000077!3.45e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.08e-21;9!UBERON:0001557;1.08e-21;9!UBERON:0000065;2.52e-13;44!UBERON:0000305;1.56e-12;7!UBERON:0000072;2.58e-12;37!UBERON:0005631;5.60e-12;10!UBERON:0000158;5.60e-12;10!UBERON:0007196;2.27e-07;15!UBERON:0001558;2.27e-07;15!UBERON:0001004;7.35e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.09e-22,9;UBERON:0000305,1.94e-12,7;UBERON:0008947,9.73e-12,38;UBERON:0003258,9.73e-12,38;UBERON:0000065,1.11e-11,54;UBERON:0001004,2.21e-11,74;UBERON:0004119,4.89e-11,160;UBERON:0000925,4.89e-11,160;UBERON:0006595,4.89e-11,160;UBERON:0004871,7.73e-11,8;UBERON:0000072,1.96e-10,47;UBERON:0001557,9.91e-10,19;UBERON:0005631,2.52e-08,14;UBERON:0000158,2.52e-08,14;UBERON:0001007,4.01e-08,145;UBERON:0001555,4.01e-08,145;UBERON:0007026,4.01e-08,145;UBERON:0007196,2.19e-07,15;UBERON:0001558,2.19e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,3.05817920982241,3.4289707169699,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,0.985207073399349,1.25937250101887,0,0,0,1.83884244895785,0,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,2.60274960087657,0.842923450390509,1.68707720918437,1.8749975364507,2.17879444092406,1.42362371466658,1.8876383142423,2.5508790466295,1.92373578473195,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,2.51322431029077,1.01847289674383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6798212819886,0.567100388969546,0.268675568108545,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,2.80709058424599,2.94659164594868,0,0,0,0.451199612907412,3.69673618101191,0,0,5.27758144464378,0,0,0.215915916102139,0,0,0,1.52925763827023,0,1.34324852833307,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0.137836572484531,0,0,0,0,1.65284915360978,0.192190067365106,3.57315594984836,0,0.929691098594572,0.62962469366128,0,0,0,0,0,0,0,0,0,1.27948895655667,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75266239629497,0.670302275535787,2.17781969722645,0,0.43050537267123,1.68471475667626,0,1.37834040124176,0,0,0,0,0,0,0,0,0,0,8.57640755933611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.16988648000277,0,0,0,5.39858678932185,4.53614521001611,2.37571744666111,11.9792673818701,0,0,0,0,0,0,0,0,0,0,0,4.94275931310298,0.179021174675609,0,0,0,6.66821940867821,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957003479195758,1.83195186803725,0.533034776018635,0,0,0,0,0,0,0,0,8.43992258112108,3.7543545876604,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0.832048038078832,0,3.82170349916073,2.69883540399248,0,0,0.967563312890852,1.31560770755134,0.574808199372465,0,0,0,0,0.993573058514948,0,0,5.13016449609816,0,0,0,0,0,0.576219191952599,6.58538438496792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0,0.855434189421647,0,0,0,0,0,0,0,12.1284838976335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686520205190771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15761237161917,0,0,0,0,1.94358060540469,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,1.81843360035278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.57589713956872,0,6.23657234973709,0.924205329202706,1.1441462864015,0.690359926060101,0,0,0,0,0,0.982631505060581,7.54066039706931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,3.66400906740301,0,0,0,2.5224494698241,0,5.18226218924691,1.43325506366115,0,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,9.52816153632368,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71872499161128,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.88632924423832,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,3.05817920982241,3.4289707169699,0,0,0,0,0,0,0,0,0,0,0,0,0.993374274723366,0.985207073399349,1.25937250101887,0,0,0,1.83884244895785,0,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,2.60274960087657,0.842923450390509,1.68707720918437,1.8749975364507,2.17879444092406,1.42362371466658,1.8876383142423,2.5508790466295,1.92373578473195,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,2.51322431029077,1.01847289674383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6798212819886,0.567100388969546,0.268675568108545,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,2.80709058424599,2.94659164594868,0,0,0,0.451199612907412,3.69673618101191,0,0,5.27758144464378,0,0,0.215915916102139,0,0,0,1.52925763827023,0,1.34324852833307,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0.137836572484531,0,0,0,0,1.65284915360978,0.192190067365106,3.57315594984836,0,0.929691098594572,0.62962469366128,0,0,0,0,0,0,0,0,0,1.27948895655667,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.75266239629497,0.670302275535787,2.17781969722645,0,0.43050537267123,1.68471475667626,0,1.37834040124176,0,0,0,0,0,0,0,0,0,0,8.57640755933611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.16988648000277,0,0,0,5.39858678932185,4.53614521001611,2.37571744666111,11.9792673818701,0,0,0,0,0,0,0,0,0,0,0,4.94275931310298,0.179021174675609,0,0,0,6.66821940867821,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957003479195758,1.83195186803725,0.533034776018635,0,0,0,0,0,0,0,0,8.43992258112108,3.7543545876604,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0.832048038078832,0,3.82170349916073,2.69883540399248,0,0,0.967563312890852,1.31560770755134,0.574808199372465,0,0,0,0,0.993573058514948,0,0,5.13016449609816,0,0,0,0,0,0.576219191952599,6.58538438496792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0.315222829196793,0,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0,0.855434189421647,0,0,0,0,0,0,0,12.1284838976335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686520205190771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15761237161917,0,0,0,0,1.94358060540469,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,1.81843360035278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.57589713956872,0,6.23657234973709,0.924205329202706,1.1441462864015,0.690359926060101,0,0,0,0,0,0.982631505060581,7.54066039706931,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0,0,0,0,3.66400906740301,0,0,0,2.5224494698241,0,5.18226218924691,1.43325506366115,0,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,9.52816153632368,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71872499161128,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.88632924423832,0,0,0,0,0,0 | ||
|short_description=p@chr3:165178174..165178192,+ | |short_description=p@chr3:165178174..165178192,+ | ||
}} | }} |
Latest revision as of 17:55, 29 July 2015
Short description: | p@chr3:165178174..165178192, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:165178174..165178192, + |
Coexpression cluster: | C4301_alveolar_malignant_amniotic_squamous_Renal_oral_acantholytic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.38e-23 | 253 |
respiratory epithelial cell | 9.56e-12 | 13 |
endo-epithelial cell | 1.50e-10 | 42 |
epithelial cell of tracheobronchial tree | 3.35e-09 | 9 |
epithelial cell of lower respiratory tract | 3.35e-09 | 9 |
endodermal cell | 4.44e-08 | 58 |
amniotic epithelial cell | 6.64e-08 | 2 |
amnion mesenchymal stem cell | 5.86e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.09e-22 | 9 |
amnion | 1.94e-12 | 7 |
respiratory primordium | 9.73e-12 | 38 |
endoderm of foregut | 9.73e-12 | 38 |
respiratory tract | 1.11e-11 | 54 |
respiratory system | 2.21e-11 | 74 |
endoderm-derived structure | 4.89e-11 | 160 |
endoderm | 4.89e-11 | 160 |
presumptive endoderm | 4.89e-11 | 160 |
somatic layer of lateral plate mesoderm | 7.73e-11 | 8 |
segment of respiratory tract | 1.96e-10 | 47 |
upper respiratory tract | 9.91e-10 | 19 |
extraembryonic membrane | 2.52e-08 | 14 |
membranous layer | 2.52e-08 | 14 |
digestive system | 4.01e-08 | 145 |
digestive tract | 4.01e-08 | 145 |
primitive gut | 4.01e-08 | 145 |
tracheobronchial tree | 2.19e-07 | 15 |
lower respiratory tract | 2.19e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.44e-18 | 106 |
cell type cancer | 7.46e-13 | 143 |
squamous cell carcinoma | 6.98e-12 | 14 |
clear cell adenocarcinoma | 2.78e-08 | 2 |
tubular adenocarcinoma | 5.79e-08 | 2 |
cancer | 6.72e-07 | 235 |