FFCP PHASE1:Hg19::chr3:50198295..50198322,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:50198295..50198322,+ to FFCP PHASE1:Hg19::chr3:50198295..50198322,+: NSchange) |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:50198295..50198322,+ | |||
|description=CAGE_peak_at_chr3:50198295..50198322,+ | |||
|id=chr3:50198295..50198322,+ | |||
|ontology_enrichment_celltype=CL:0000071!5.62e-17!18;CL:0002546!5.62e-17!18;CL:0002139!6.76e-14!24;CL:0000066!4.37e-12!254;CL:0000076!6.31e-12!62;CL:0002543!3.49e-10!6;CL:0000115!4.70e-10!35;CL:0000213!7.57e-10!57;CL:0000215!7.57e-10!57;CL:0002078!1.07e-09!44;CL:1000413!2.97e-09!9;CL:0002150!1.40e-08!3;CL:0000861!1.40e-08!3;CL:0002618!6.99e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002543;4.24e-14;6!CL:0000071;1.69e-10;18!CL:0002139;5.04e-08;24!CL:0000115;5.39e-08;36!CL:0002618;7.02e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002543,3.97e-14,6;CL:0000071,1.72e-10,18;CL:0002546,1.72e-10,18;CL:0000115,3.81e-09,36;CL:0002139,5.11e-08,24;CL:0002618,6.34e-08,3;CL:0002078,2.24e-07,45 | |||
|ontology_enrichment_development_v019=UBERON:0010227;5.71e-21;1!CL:0002546;1.69e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!5.62e-17!18;UBERON:0004638!5.62e-17!18;UBERON:0004852!5.62e-17!18;UBERON:0001737!3.10e-15!9;UBERON:0006914!2.48e-13!25;UBERON:0000487!2.65e-13!22;UBERON:0003915!2.97e-09!9;UBERON:0004700!2.97e-09!9;UBERON:0001917!2.97e-09!9;UBERON:0001557!6.95e-08!19;UBERON:0000477!7.56e-08!286;UBERON:0008947!7.67e-07!38;UBERON:0003258!7.67e-07!38;UBERON:0007023!7.67e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002079;5.71e-21;1!UBERON:0000996;5.71e-21;1!UBERON:0002081;3.52e-11;2!UBERON:0004638;1.69e-10;18!UBERON:0001986;1.69e-10;18!UBERON:0004852;1.69e-10;18!UBERON:0001638;1.01e-09;9!UBERON:0003920;1.01e-09;9!UBERON:0004582;1.01e-09;9!UBERON:0000487;1.06e-08;22!UBERON:0004151;7.02e-08;3!UBERON:0006914;1.00e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000996,3.45e-21,1;UBERON:0002079,5.16e-21,1;UBERON:0002081,3.35e-11,2;UBERON:0010227,3.35e-11,2;UBERON:0004638,1.72e-10,18;UBERON:0001986,1.72e-10,18;UBERON:0004852,1.72e-10,18;UBERON:0001638,9.65e-10,9;UBERON:0003920,9.65e-10,9;UBERON:0004582,9.65e-10,9;UBERON:0000487,1.08e-08,22;UBERON:0004151,6.78e-08,3;UBERON:0006914,1.01e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.351339142772504,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.694281003215189,0.56530794192401,0,0.825354125820202,1.25396979922086,0,0,0,0,0.760272105718513,0,0,0,0.446498641420399,1.79623498100936,0.450445921933289,0,0.949265659568129,1.28241220751285,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.505754070234305,0.723033089650446,0.661763836394364,0.217879444092406,0.71181185733329,0.674156540800822,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,2.27466768141793,0.850468526382578,0,0,0.541892875087706,0,0,0,0,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0.330569830721956,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90268993867255,3.80064448848165,2.95615645391553,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0.288109595976299,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,1.42939065274673,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.828478110694391,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0.470531639396343,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0,0.844712203265363,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0,0.111231401892069,0,0,0,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.563903507879121,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.151557396436479,0,0.829169439458779,0,0.426467963801962,0,0,0,0.112131862580613,0.0636471582781649,0.202117188958219,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,1.99727032255654,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.351339142772504,0.0654895377488563,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0.694281003215189,0.56530794192401,0,0.825354125820202,1.25396979922086,0,0,0,0,0.760272105718513,0,0,0,0.446498641420399,1.79623498100936,0.450445921933289,0,0.949265659568129,1.28241220751285,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.505754070234305,0.723033089650446,0.661763836394364,0.217879444092406,0.71181185733329,0.674156540800822,0.392442930250692,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,2.27466768141793,0.850468526382578,0,0,0.541892875087706,0,0,0,0,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0.330569830721956,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0.192444225451024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90268993867255,3.80064448848165,2.95615645391553,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0.288109595976299,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,1.42939065274673,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.828478110694391,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0,0,0,0.470531639396343,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0,0,0.844712203265363,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0,0.111231401892069,0,0,0,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.563903507879121,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.151557396436479,0,0.829169439458779,0,0.426467963801962,0,0,0,0.112131862580613,0.0636471582781649,0.202117188958219,0,0,0.0673520530145875,0.0717222053926763,0,0,0,0,0,0,0,0,1.99727032255654,0,0 | ||
|short_description=p@chr3:50198295..50198322,+ | |||
}} | }} |
Latest revision as of 22:01, 29 July 2015
Short description: | p@chr3:50198295..50198322, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:50198295..50198322, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vein endothelial cell | 3.97e-14 | 6 |
blood vessel endothelial cell | 1.72e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.72e-10 | 18 |
endothelial cell | 3.81e-09 | 36 |
endothelial cell of vascular tree | 5.11e-08 | 24 |
endothelial cell of umbilical vein | 6.34e-08 | 3 |
meso-epithelial cell | 2.24e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
vagina | 3.45e-21 | 1 |
left cardiac atrium | 5.16e-21 | 1 |
cardiac atrium | 3.35e-11 | 2 |
future cardiac atrium | 3.35e-11 | 2 |
blood vessel endothelium | 1.72e-10 | 18 |
endothelium | 1.72e-10 | 18 |
cardiovascular system endothelium | 1.72e-10 | 18 |
vein | 9.65e-10 | 9 |
venous blood vessel | 9.65e-10 | 9 |
venous system | 9.65e-10 | 9 |
simple squamous epithelium | 1.08e-08 | 22 |
cardiac chamber | 6.78e-08 | 3 |
squamous epithelium | 1.01e-07 | 25 |