FFCP PHASE1:Hg19::chr3:9956047..9956079,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:9956047..9956079,+ | |||
|coexpression_cluster_id=C108 | |coexpression_cluster_id=C108 | ||
|description=CAGE_peak_at_chr3:9956047..9956079,+ | |description=CAGE_peak_at_chr3:9956047..9956079,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002363!1.50e-08!2;CL:0000008!1.50e-08!2;CL:0002367!1.86e-08!2;CL:0002602!2.31e-08!2 | |ontology_enrichment_celltype=CL:0002363!1.50e-08!2;CL:0000008!1.50e-08!2;CL:0002367!1.86e-08!2;CL:0002602!2.31e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002363;8.10e-26;2!CL:0002327;1.21e-13;4 | |ontology_enrichment_celltype_v019=CL:0002363;8.10e-26;2!CL:0002327;1.21e-13;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002363,9.18e-26,2;CL:0000008,9.18e-26,2;CL:0002327,1.13e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;5.12e-50;1!CL:0000008;8.10e-26;2 | |ontology_enrichment_development_v019=UBERON:0008425;5.12e-50;1!CL:0000008;8.10e-26;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;1.21e-13;4!DOID:1612;1.21e-13;4 | |ontology_enrichment_disease_v019=DOID:5093;1.21e-13;4!DOID:1612;1.21e-13;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5093,1.13e-13,4;DOID:1612,1.13e-13,4 | |||
|ontology_enrichment_uberon=UBERON:0001736!1.16e-15!1;UBERON:0006298!1.16e-15!1;UBERON:0002365!1.63e-11!31;UBERON:0002330!1.63e-11!31;UBERON:0001044!2.09e-10!6;UBERON:0003293!2.09e-10!6;UBERON:0003294!2.09e-10!6;UBERON:0010047!2.09e-10!6;UBERON:0000167!2.09e-10!6;UBERON:0003566!1.50e-08!2;UBERON:0001777!1.50e-08!2;UBERON:0001829!1.73e-08!2;UBERON:0005969!1.86e-08!2;UBERON:0003956!1.86e-08!2;UBERON:0009568!2.31e-08!2;UBERON:0002216!2.31e-08!2;UBERON:0002209!2.31e-08!2;UBERON:0002213!2.31e-08!2;UBERON:0004267!2.31e-08!2;UBERON:0006444!2.31e-08!2;UBERON:0001995!2.31e-08!2;UBERON:0004715!2.31e-08!2;UBERON:0001468!2.31e-08!2;UBERON:0001130!2.31e-08!2;UBERON:0001066!2.31e-08!2 | |ontology_enrichment_uberon=UBERON:0001736!1.16e-15!1;UBERON:0006298!1.16e-15!1;UBERON:0002365!1.63e-11!31;UBERON:0002330!1.63e-11!31;UBERON:0001044!2.09e-10!6;UBERON:0003293!2.09e-10!6;UBERON:0003294!2.09e-10!6;UBERON:0010047!2.09e-10!6;UBERON:0000167!2.09e-10!6;UBERON:0003566!1.50e-08!2;UBERON:0001777!1.50e-08!2;UBERON:0001829!1.73e-08!2;UBERON:0005969!1.86e-08!2;UBERON:0003956!1.86e-08!2;UBERON:0009568!2.31e-08!2;UBERON:0002216!2.31e-08!2;UBERON:0002209!2.31e-08!2;UBERON:0002213!2.31e-08!2;UBERON:0004267!2.31e-08!2;UBERON:0006444!2.31e-08!2;UBERON:0001995!2.31e-08!2;UBERON:0004715!2.31e-08!2;UBERON:0001468!2.31e-08!2;UBERON:0001130!2.31e-08!2;UBERON:0001066!2.31e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;8.10e-26;2!UBERON:0001777;8.10e-26;2!UBERON:0001911;1.21e-13;4!UBERON:0003891;1.21e-13;4!UBERON:0000964;1.21e-13;4!UBERON:0010409;1.21e-13;4 | |ontology_enrichment_uberon_v019=UBERON:0003566;8.10e-26;2!UBERON:0001777;8.10e-26;2!UBERON:0001911;1.21e-13;4!UBERON:0003891;1.21e-13;4!UBERON:0000964;1.21e-13;4!UBERON:0010409;1.21e-13;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,9.18e-26,2;UBERON:0001777,9.18e-26,2;UBERON:0001911,1.13e-13,4;UBERON:0005333,1.13e-13,4;UBERON:0008425,1.13e-13,4;UBERON:0005311,1.13e-13,4;UBERON:0003891,1.29e-13,4;UBERON:0000964,1.29e-13,4;UBERON:0010409,1.29e-13,4;UBERON:0004348,1.29e-13,4;UBERON:0005427,1.29e-13,4;UBERON:0000076,1.69e-07,8;UBERON:0005085,2.05e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53380451249978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,4.5189024372854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66173999992772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.53380451249978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,4.5189024372854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66173999992772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:9956047..9956079,+ | |short_description=p@chr3:9956047..9956079,+ | ||
}} | }} |
Latest revision as of 00:13, 30 July 2015
Short description: | p@chr3:9956047..9956079, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:9956047..9956079, + |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratocyte | 9.18e-26 | 2 |
migratory cranial neural crest cell | 9.18e-26 | 2 |
mammary gland epithelial cell | 1.13e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 9.18e-26 | 2 |
substantia propria of cornea | 9.18e-26 | 2 |
mammary gland | 1.13e-13 | 4 |
mammary bud | 1.13e-13 | 4 |
mammary ridge | 1.13e-13 | 4 |
mammary placode | 1.13e-13 | 4 |
stroma | 1.29e-13 | 4 |
cornea | 1.29e-13 | 4 |
eye surface | 1.29e-13 | 4 |
optic eminence | 1.29e-13 | 4 |
corneal primordium | 1.29e-13 | 4 |
external ectoderm | 1.69e-07 | 8 |
ectodermal placode | 2.05e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.13e-13 | 4 |
breast cancer | 1.13e-13 | 4 |