FFCP PHASE1:Hg19::chr4:113569853..113569862,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000505215,ENST00000509938_5end | |association_with_transcript=0bp_to_ENST00000505215,ENST00000509938_5end | ||
|cluster_id=chr4:113569853..113569862,- | |||
|coexpression_cluster_id=C130 | |||
|description=CAGE_peak_1_at_ENST00000505215_5end,CAGE_peak_1_at_ENST00000509938_5end | |description=CAGE_peak_1_at_ENST00000505215_5end,CAGE_peak_1_at_ENST00000509938_5end | ||
|id=chr4:113569853..113569862,- | |id=chr4:113569853..113569862,- | ||
|ontology_enrichment_celltype=CL:0002322!3.22e-32!5;CL:0000540!8.34e-18!6;CL:0000031!8.34e-18!6;CL:0000404!8.34e-18!6;CL:0000039!7.05e-15!7;CL:0000586!7.05e-15!7;CL:0000047!2.16e-13!8;CL:0002581!1.22e-07!1;CL:0000133!4.87e-07!59 | |ontology_enrichment_celltype=CL:0002322!3.22e-32!5;CL:0000540!8.34e-18!6;CL:0000031!8.34e-18!6;CL:0000404!8.34e-18!6;CL:0000039!7.05e-15!7;CL:0000586!7.05e-15!7;CL:0000047!2.16e-13!8;CL:0002581!1.22e-07!1;CL:0000133!4.87e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;7.61e-55;5!CL:0000039;3.29e-25;7!CL:0000586;3.29e-25;7!CL:0002321;2.43e-18;15!CL:0000540;8.67e-18;6!CL:0000404;8.67e-18;6!CL:0002581;4.55e-12;1!CL:0000148;1.67e-10;10!CL:0000147;1.19e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.61e-55,5;CL:0000039,3.29e-25,7;CL:0000586,3.29e-25,7;CL:0000540,8.67e-18,6;CL:0000031,8.67e-18,6;CL:0000404,8.67e-18,6;CL:0000047,1.71e-13,8;CL:0002581,4.31e-12,1;CL:0000148,1.67e-10,10;CL:0000541,1.67e-10,10;CL:0000147,1.19e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.02e-27;10!UBERON:0005564;2.02e-27;10!CL:0000031;8.67e-18;6 | |||
|ontology_enrichment_disease=DOID:3095!1.43e-13!22;DOID:2994!1.43e-13!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.24e-24;22!DOID:2994;6.24e-24;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,6.24e-24,22;DOID:2994,6.24e-24,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!4.88e-13!8;UBERON:0000991!1.81e-10!21;UBERON:0009196!1.81e-10!21;UBERON:0009117!1.81e-10!21;UBERON:0005564!1.81e-10!21;UBERON:0004176!5.74e-10!22;UBERON:0003135!1.63e-09!11;UBERON:0007195!1.30e-07!1;UBERON:0003101!5.49e-07!22;UBERON:0000079!5.49e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.19e-22;8!UBERON:0003135;3.63e-16;11!UBERON:0000991;4.65e-13;21!UBERON:0007195;4.55e-12;1!UBERON:0000922;7.44e-11;49!UBERON:0003101;3.36e-08;22!UBERON:0000079;3.36e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.19e-22,8;UBERON:0003135,3.63e-16,11;UBERON:0000991,4.65e-13,21;UBERON:0009196,4.65e-13,21;UBERON:0009117,4.65e-13,21;UBERON:0005564,4.65e-13,21;UBERON:0004176,1.84e-12,22;UBERON:0007195,4.81e-12,1;UBERON:0003101,3.36e-08,22;UBERON:0000079,3.36e-08,22 | |||
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|short_description=p1@ENST00000505215,p1@ENST00000509938 | |short_description=p1@ENST00000505215,p1@ENST00000509938 | ||
}} | }} |
Latest revision as of 00:58, 30 July 2015
Short description: | p1@ENST00000505215, p1@ENST00000509938 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000505215_5end, CAGE_peak_1_at_ENST00000509938_5end |
Coexpression cluster: | C130_iPS_HES3GFP_H9_teratocarcinoma_testicular_colon_Alveolar |
Association with transcript: | 0bp_to_ENST00000505215, ENST00000509938_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.61e-55 | 5 |
germ line cell | 3.29e-25 | 7 |
germ cell | 3.29e-25 | 7 |
neuron | 8.67e-18 | 6 |
neuroblast | 8.67e-18 | 6 |
electrically signaling cell | 8.67e-18 | 6 |
neuronal stem cell | 1.71e-13 | 8 |
perirenal preadipocyte | 4.31e-12 | 1 |
melanocyte | 1.67e-10 | 10 |
melanoblast | 1.67e-10 | 10 |
pigment cell | 1.19e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
testis | 4.19e-22 | 8 |
male reproductive organ | 3.63e-16 | 11 |
gonad | 4.65e-13 | 21 |
indifferent external genitalia | 4.65e-13 | 21 |
indifferent gonad | 4.65e-13 | 21 |
gonad primordium | 4.65e-13 | 21 |
external genitalia | 1.84e-12 | 22 |
stroma of bone marrow | 4.81e-12 | 1 |
male organism | 3.36e-08 | 22 |
male reproductive system | 3.36e-08 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.24e-24 | 22 |
germ cell cancer | 6.24e-24 | 22 |