FFCP PHASE1:Hg19::chr4:183399850..183399863,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:183399850..183399863,+ | |||
|description=CAGE_peak_at_chr4:183399850..183399863,+ | |description=CAGE_peak_at_chr4:183399850..183399863,+ | ||
|id=chr4:183399850..183399863,+ | |id=chr4:183399850..183399863,+ | ||
|ontology_enrichment_celltype=CL:0002139!2.25e-40!24;CL:0000115!1.34e-31!35;CL:0000071!5.70e-26!18;CL:0002546!5.70e-26!18;CL:0002078!8.59e-24!44;CL:0000213!1.21e-18!57;CL:0000215!1.21e-18!57;CL:0005020!1.11e-16!6;CL:0002138!1.11e-16!6;CL:0005022!1.11e-16!6;CL:1000413!2.46e-14!9;CL:0002144!1.90e-09!3;CL:0000222!6.39e-09!119;CL:0002618!1.07e-07!3;CL:0002544!1.51e-07!6;CL:0002545!9.93e-07!2 | |ontology_enrichment_celltype=CL:0002139!2.25e-40!24;CL:0000115!1.34e-31!35;CL:0000071!5.70e-26!18;CL:0002546!5.70e-26!18;CL:0002078!8.59e-24!44;CL:0000213!1.21e-18!57;CL:0000215!1.21e-18!57;CL:0005020!1.11e-16!6;CL:0002138!1.11e-16!6;CL:0005022!1.11e-16!6;CL:1000413!2.46e-14!9;CL:0002144!1.90e-09!3;CL:0000222!6.39e-09!119;CL:0002618!1.07e-07!3;CL:0002544!1.51e-07!6;CL:0002545!9.93e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.78e-62;24!CL:0000115;1.47e-46;36!CL:0002138;4.51e-38;6!CL:0000071;1.18e-31;18!CL:0002078;1.36e-31;45!CL:0002144;9.77e-29;3!CL:1000413;3.58e-25;9!CL:0000213;2.04e-19;58!CL:0000215;2.04e-19;58!CL:0002545;2.16e-19;2!CL:0002188;4.69e-08;5!CL:0002544;4.66e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.80e-62,24;CL:0000115,1.35e-54,36;CL:0002078,3.23e-43,45;CL:0005020,3.20e-38,6;CL:0002138,3.20e-38,6;CL:0005022,3.20e-38,6;CL:0000213,5.28e-33,58;CL:0000215,5.28e-33,58;CL:0000071,1.41e-31,18;CL:0002546,1.41e-31,18;CL:0002144,1.07e-28,3;CL:1000413,4.28e-25,9;CL:0002545,2.38e-19,2;CL:0000222,1.02e-16,121;CL:0000076,2.54e-08,63;CL:0002188,3.52e-08,5;CL:0002544,4.80e-07,6 | |||
|ontology_enrichment_development_v019=CL:0005022;4.51e-38;6!CL:0002546;1.18e-31;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!5.70e-26!18;UBERON:0004638!5.70e-26!18;UBERON:0004852!5.70e-26!18;UBERON:0000487!1.50e-20!22;UBERON:0006914!1.24e-17!25;UBERON:0002465!3.01e-16!10;UBERON:0000055!2.45e-14!69;UBERON:0003915!2.46e-14!9;UBERON:0004700!2.46e-14!9;UBERON:0001917!2.46e-14!9;UBERON:0002049!4.79e-13!79;UBERON:0007798!4.79e-13!79;UBERON:0001473!2.78e-12!8;UBERON:0004536!2.78e-12!8;UBERON:0006558!2.78e-12!8;UBERON:0001915!1.90e-09!3;UBERON:0001982!1.90e-09!3;UBERON:0001009!7.55e-09!113;UBERON:0004535!2.04e-08!110;UBERON:0001981!2.07e-08!60;UBERON:0007500!2.07e-08!60;UBERON:0004537!2.07e-08!60;UBERON:0006965!2.07e-08!60;UBERON:0000477!5.34e-07!286;UBERON:0005800!9.93e-07!2;UBERON:0001515!9.93e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.18e-31;18!UBERON:0001986;1.18e-31;18!UBERON:0004852;1.18e-31;18!UBERON:0010523;9.77e-29;3!UBERON:0001915;9.77e-29;3!UBERON:0001982;9.77e-29;3!UBERON:0001473;1.45e-28;8!UBERON:0004536;1.45e-28;8!UBERON:0006558;1.45e-28;8!UBERON:0000487;9.76e-26;22!UBERON:0003915;3.58e-25;9!UBERON:0004700;3.58e-25;9!UBERON:0001917;3.58e-25;9!UBERON:0002465;7.51e-23;10!UBERON:0006914;1.55e-22;25!UBERON:0005800;2.16e-19;2!UBERON:0001515;2.16e-19;2!UBERON:0000490;1.13e-15;33!UBERON:0000055;3.11e-13;65!UBERON:0002049;4.10e-12;75!UBERON:0007798;4.10e-12;75!UBERON:0002405;2.18e-08;27!UBERON:0007500;2.02e-07;56!UBERON:0001981;2.02e-07;56!UBERON:0004537;2.02e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.41e-31,18;UBERON:0001986,1.41e-31,18;UBERON:0004852,1.41e-31,18;UBERON:0010523,1.07e-28,3;UBERON:0001915,1.07e-28,3;UBERON:0001982,1.07e-28,3;UBERON:0001473,1.12e-28,8;UBERON:0004536,1.12e-28,8;UBERON:0006558,1.12e-28,8;UBERON:0000487,1.13e-25,22;UBERON:0003915,4.28e-25,9;UBERON:0004700,4.28e-25,9;UBERON:0001917,4.28e-25,9;UBERON:0002465,6.13e-23,10;UBERON:0006914,1.76e-22,25;UBERON:0002049,1.07e-20,78;UBERON:0007798,1.07e-20,78;UBERON:0000055,1.16e-20,68;UBERON:0005800,2.38e-19,2;UBERON:0001515,2.38e-19,2;UBERON:0004535,3.76e-14,109;UBERON:0001009,1.04e-13,112;UBERON:0007500,5.91e-09,59;UBERON:0001981,5.91e-09,59;UBERON:0004537,5.91e-09,59;UBERON:0006965,5.91e-09,59 | |||
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| ||
|short_description=p@chr4:183399850..183399863,+ | |short_description=p@chr4:183399850..183399863,+ | ||
}} | }} |
Latest revision as of 03:45, 30 July 2015
Short description: | p@chr4:183399850..183399863, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:183399850..183399863, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.80e-62 | 24 |
endothelial cell | 1.35e-54 | 36 |
meso-epithelial cell | 3.23e-43 | 45 |
lymphangioblast | 3.20e-38 | 6 |
endothelial cell of lymphatic vessel | 3.20e-38 | 6 |
vascular lymphangioblast | 3.20e-38 | 6 |
lining cell | 5.28e-33 | 58 |
barrier cell | 5.28e-33 | 58 |
blood vessel endothelial cell | 1.41e-31 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.41e-31 | 18 |
capillary endothelial cell | 1.07e-28 | 3 |
endothelial cell of artery | 4.28e-25 | 9 |
thoracic aorta endothelial cell | 2.38e-19 | 2 |
mesodermal cell | 1.02e-16 | 121 |
squamous epithelial cell | 2.54e-08 | 63 |
glomerular endothelial cell | 3.52e-08 | 5 |
aortic endothelial cell | 4.80e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.41e-31 | 18 |
endothelium | 1.41e-31 | 18 |
cardiovascular system endothelium | 1.41e-31 | 18 |
microcirculatory vessel | 1.07e-28 | 3 |
endothelium of capillary | 1.07e-28 | 3 |
capillary | 1.07e-28 | 3 |
lymphatic vessel | 1.12e-28 | 8 |
lymph vasculature | 1.12e-28 | 8 |
lymphatic part of lymphoid system | 1.12e-28 | 8 |
simple squamous epithelium | 1.13e-25 | 22 |
endothelial tube | 4.28e-25 | 9 |
arterial system endothelium | 4.28e-25 | 9 |
endothelium of artery | 4.28e-25 | 9 |
lymphoid system | 6.13e-23 | 10 |
squamous epithelium | 1.76e-22 | 25 |
vasculature | 1.07e-20 | 78 |
vascular system | 1.07e-20 | 78 |
vessel | 1.16e-20 | 68 |
segment of aorta | 2.38e-19 | 2 |
thoracic aorta | 2.38e-19 | 2 |
cardiovascular system | 3.76e-14 | 109 |
circulatory system | 1.04e-13 | 112 |
epithelial tube open at both ends | 5.91e-09 | 59 |
blood vessel | 5.91e-09 | 59 |
blood vasculature | 5.91e-09 | 59 |
vascular cord | 5.91e-09 | 59 |